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<h1 class="epydoc">Identifier Index</h1>
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[
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</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="M">M</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#m2rotaxis">m2rotaxis()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.binning.Meta-class.html#MAX_BIN">MAX_BIN</a><br />
<span class="index-where">(in <a href="Bio.GFF.binning.Meta-class.html">Meta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MAGIC">MAGIC</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#MAX_IIS_ITERATIONS">MAX_IIS_ITERATIONS</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MAGIC">MAGIC</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#MAX_ITERATIONS">MAX_ITERATIONS</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.dtd2py-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.dtd2py-module.html">Bio.EUtils.dtd2py</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#MAX_NEWTON_ITERATIONS">MAX_NEWTON_ITERATIONS</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils-module.html#MINUS_STRAND">MINUS_STRAND</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MAX_REPEAT">MAX_REPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MissingExternalDependencyError-class.html">MissingExternalDependencyError</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise.dnal-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.Wise.dnal-module.html">Bio.Wise.dnal</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MAX_REPEAT">MAX_REPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.MissingTable-class.html">MissingTable</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.Wise-module.html">Bio.Wise</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MAX_UNTIL">MAX_UNTIL</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Mixins-module.html">Mixins</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise.psw-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MAX_UNTIL">MAX_UNTIL</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#miyata">miyata</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.biblio-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.biblio-module.html">Bio.biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html">MaxEntropy</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.AbstractTrainer-class.html#ml_estimator">ml_estimator()</a><br />
<span class="index-where">(in <a href="Bio.HMM.Trainer.AbstractTrainer-class.html">AbstractTrainer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy.MaxEntropy-class.html">MaxEntropy</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.mmCIF-module.html">mmCIF</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.run_tests-module.html#main">main()</a><br />
<span class="index-where">(in <a href="Martel.test.run_tests-module.html">Martel.test.run_tests</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIF2Dict-module.html">MMCIF2Dict</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#major_revision_date">major_revision_date()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html">MMCIF2Dict</a><br />
<span class="index-where">(in <a href="Bio.PDB.MMCIF2Dict-module.html">Bio.PDB.MMCIF2Dict</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#make_1id">make_1id()</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIFParser-module.html">MMCIFParser</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#make_2id">make_2id()</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIFParser.MMCIFParser-class.html">MMCIFParser</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#make_back_table">make_back_table()</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Model-module.html">Model</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config._support.make_cached_expression-class.html">make_cached_expression</a><br />
<span class="index-where">(in <a href="Bio.config._support-module.html">Bio.config._support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Model.Model-class.html">Model</a><br />
<span class="index-where">(in <a href="Bio.PDB.Model-module.html">Bio.PDB.Model</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.Motif-class.html#make_consensus">make_consensus()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#model_name">model_name</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#make_decoder">make_decoder()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#maximum">maximum</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#model_sequences">model_sequences()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html" onclick="show_private();">_DescriptionConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#make_dssp_dict">make_dssp_dict()</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression-module.html#MAXREPEAT">MAXREPEAT</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#molecular_weight">molecular_weight()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#make_entropy">make_entropy()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.MaxRepeat-class.html">MaxRepeat</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#molecular_weight">molecular_weight()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#make_expression">make_expression()</a><br />
<span class="index-where">(in <a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MAXREPEAT">MAXREPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Async.SplitFDist-class.html#monitor">monitor()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist.Async.SplitFDist-class.html">SplitFDist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#make_expression">make_expression()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MAXREPEAT">MAXREPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html">MostCountSchemaFitness</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#make_format">make_format()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#MAXREPEAT">MAXREPEAT</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif-module.html">Motif</a><br />
<span class="index-where">(in <a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.FormatRegistry.FormatObject-class.html#make_iterator">make_iterator()</a><br />
<span class="index-where">(in <a href="Bio.config.FormatRegistry.FormatObject-class.html">FormatObject</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#MaxRepeat">MaxRepeat()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif-module.html">Bio.AlignAce.Motif</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.Expression-class.html#make_iterator">make_iterator()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Expression-class.html">Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#MaxSize">MaxSize</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif-module.html">Motif</a><br />
<span class="index-where">(in <a href="Bio.MEME-module.html">Bio.MEME</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.HeaderFooter-class.html#make_iterator">make_iterator()</a><br />
<span class="index-where">(in <a href="Martel.Expression.HeaderFooter-class.html">HeaderFooter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.RanaConfig-module.html#MaxSize">MaxSize</a><br />
<span class="index-where">(in <a href="Bio.Restriction.RanaConfig-module.html">Bio.Restriction.RanaConfig</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.Motif-class.html">Motif</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif-module.html">Bio.MEME.Motif</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.ParseRecords-class.html#make_iterator">make_iterator()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ParseRecords-class.html">ParseRecords</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#mclach">mclach</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Motif-module.html">Motif</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene-module.html">Bio.NeuralNetwork.Gene</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#make_log_odds_matrix">make_log_odds_matrix()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline-module.html">Medline</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif">motif()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.FormatRegistry.FormatObject-class.html#make_parser">make_parser()</a><br />
<span class="index-where">(in <a href="Bio.config.FormatRegistry.FormatObject-class.html">FormatObject</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.medline-module.html">medline</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_hit">motif_hit()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config._support.make_cached_expression-class.html#make_parser">make_parser()</a><br />
<span class="index-where">(in <a href="Bio.config._support.make_cached_expression-class.html">make_cached_expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.medline-module.html#medline">medline</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.medline-module.html">Bio.dbdefs.medline</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_mask">motif_mask()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.Expression-class.html#make_parser">make_parser()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Expression-class.html">Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.medline-module.html#medline_eutils">medline_eutils</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.medline-module.html">Bio.dbdefs.medline</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser._MEMEConsumer-class.html#motif_name">motif_name()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser._MEMEConsumer-class.html" onclick="show_private();">_MEMEConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.HeaderFooter-class.html#make_parser">make_parser()</a><br />
<span class="index-where">(in <a href="Martel.Expression.HeaderFooter-class.html">HeaderFooter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#medline_id">medline_id()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_score">motif_score()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.ParseRecords-class.html#make_parser">make_parser()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ParseRecords-class.html">ParseRecords</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#medline_id">medline_id()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.CompareAceConsumer-class.html#motif_score">motif_score()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.CompareAceConsumer-class.html">CompareAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#make_pattern">make_pattern()</a><br />
<span class="index-where">(in <a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#medline_line">medline_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Motif.MotifCoder-class.html">MotifCoder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Motif-module.html">Bio.NeuralNetwork.Gene.Motif</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.Motif-class.html#make_pssm">make_pssm()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.MeltingTemp-module.html">MeltingTemp</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html">MotifFinder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Motif-module.html">Bio.NeuralNetwork.Gene.Motif</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config._support.make_rate_limited_function-class.html">make_rate_limited_function</a><br />
<span class="index-where">(in <a href="Bio.config._support-module.html">Bio.config._support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME-module.html">MEME</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#move_start">move_start()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html">InterlacedSequenceIterator</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#make_relative_entropy">make_relative_entropy()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.MEMEMotif-class.html">MEMEMotif</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif-module.html">Bio.MEME.Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#MRBAYESSAFE">MRBAYESSAFE</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#make_typechecked_decoder">make_typechecked_decoder()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MEMEParser-class.html">MEMEParser</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser-module.html">Bio.MEME.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#MSG_FAILURE">MSG_FAILURE</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#makedict">makedict()</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MEMERecord-class.html">MEMERecord</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser-module.html">Bio.MEME.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Insert-class.html#MSG_INTEGRITY_ERROR">MSG_INTEGRITY_ERROR</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Insert-class.html">Insert</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#makeFIRST">makeFIRST()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html">MemoryFlatDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#MSG_SUCCESS">MSG_SUCCESS</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericScanner-class.html#makeRE">makeRE()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericScanner-class.html">GenericScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Menu-class.html">Menu</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html">msre_constants</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#makeTableX">makeTableX()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.MenuName-class.html">MenuName</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html">msre_parse</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KEGG.Map-module.html">Map</a><br />
<span class="index-where">(in <a href="Bio.KEGG-module.html">Bio.KEGG</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.optimize-module.html#merge_strings">merge_strings()</a><br />
<span class="index-where">(in <a href="Martel.optimize-module.html">Martel.optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPTools-module.html#mult_align">mult_align()</a><br />
<span class="index-where">(in <a href="Bio.FSSP.FSSPTools-module.html">Bio.FSSP.FSSPTools</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.FeatureAggregate-class.html#map">map()</a><br />
<span class="index-where">(in <a href="Bio.GFF.FeatureAggregate-class.html">FeatureAggregate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#mesh_heading">mesh_heading()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#multalign">multalign()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html" onclick="show_private();">_AlignmentConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#mapped_pattern">mapped_pattern()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#mesh_tree_number">mesh_tree_number()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Multicall-class.html">Multicall</a><br />
<span class="index-where">(in <a href="Martel.Dispatch-module.html">Martel.Dispatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#mapping">mapping()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#message">message</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.MulticallEnd-class.html">MulticallEnd</a><br />
<span class="index-where">(in <a href="Martel.Dispatch-module.html">Martel.Dispatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MARK">MARK</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.binning.Meta-class.html">Meta</a></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.MulticallStart-class.html">MulticallStart</a><br />
<span class="index-where">(in <a href="Martel.Dispatch-module.html">Martel.Dispatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MARK">MARK</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.Record.Metabolite-class.html">Metabolite</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.Record-module.html">Bio.MetaTool.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict-module.html">MultiDict</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop._RecordConsumer-class.html#marker_len">marker_len()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_count_block">metabolite_count_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph-module.html">MultiGraph</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep-module.html">Bio.Pathway.Rep</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel-module.html">MarkovModel</a><br />
<span class="index-where">(in <a href="Bio.HMM-module.html">Bio.HMM</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_count_line">metabolite_count_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph-module.html">Bio.Pathway.Rep.MultiGraph</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html">MarkovModel</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_count_tag">metabolite_count_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a><br />
<span class="index-where">(in <a href="Bio.Clustalw-module.html">Bio.Clustalw</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel.MarkovModel-class.html">MarkovModel</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#metabolite_count_tag">metabolite_count_tag()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.MultipleAlignment-class.html">MultipleAlignment</a><br />
<span class="index-where">(in <a href="Bio.Blast.Record-module.html">Bio.Blast.Record</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel-module.html">Bio.HMM.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_info">metabolite_info</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel-module.html">Martel</a></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_line">metabolite_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#metabolite_line">metabolite_line()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTParser-class.html">MASTParser</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser-module.html">Bio.MEME.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_role_cols">metabolite_role_cols</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTRecord-class.html">MASTRecord</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser-module.html">Bio.MEME.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#metabolite_roles">metabolite_roles()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTMatcher-class.html#match">match()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTMatcher-class.html">GenericASTMatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolite_roles_heading">metabolite_roles_heading</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.Prosite-class.html#match">match()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.Prosite-class.html">Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.Record.MetaboliteRole-class.html">MetaboliteRole</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.Record-module.html">Bio.MetaTool.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.triefind-module.html#match">match()</a><br />
<span class="index-where">(in <a href="Bio.triefind-module.html">Bio.triefind</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolites_block">metabolites_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#multiply">multiply</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Tokenizer-class.html#match">match()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Tokenizer-class.html">Tokenizer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metabolites_summary">metabolites_summary</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy10-class.html">Murphy10</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.triefind-module.html#match_all">match_all()</a><br />
<span class="index-where">(in <a href="Bio.triefind-module.html">Bio.triefind</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool-module.html">MetaTool</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy15-class.html">Murphy15</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTMatcher-class.html#match_r">match_r()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTMatcher-class.html">GenericASTMatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metatool_block">metatool_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy4-class.html">Murphy4</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ais-module.html#match_sequence">match_sequence()</a><br />
<span class="index-where">(in <a href="Bio.Ais-module.html">Bio.Ais</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html">metatool_format</a><br />
<span class="index-where">(in <a href="Bio.MetaTool-module.html">Bio.MetaTool</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy8-class.html">Murphy8</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#match_symbols">match_symbols</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metatool_line">metatool_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_10">murphy_10</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema-module.html#matches_schema">matches_schema()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metatool_record">metatool_record</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_10_tab">murphy_10_tab</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction-module.html#matching">matching</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#metatool_tag">metatool_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_15">murphy_15</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#matchpath">matchpath()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Meth_Dep-class.html">Meth_Dep</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_15_tab">murphy_15_tab</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#matchpath">matchpath()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Meth_Undep-class.html">Meth_Undep</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_4">murphy_4</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#MATCODE">MATCODE</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.MethodHolder-class.html">MethodHolder</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_4_tab">murphy_4_tab</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.mathfns-module.html">mathfns</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#methylation">methylation()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_8">murphy_8</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#matrix">matrix</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#microorganism">microorganism()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#murphy_8_tab">murphy_8_tab</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#matrix">matrix()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.binning.Meta-class.html#MIN_BIN">MIN_BIN</a><br />
<span class="index-where">(in <a href="Bio.GFF.binning.Meta-class.html">Meta</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#must_not_parse">must_not_parse()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#matrix">matrix()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#min_dist">min_dist()</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#must_parse">must_parse()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#matrix_block">matrix_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MIN_REPEAT">MIN_REPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a><br />
<span class="index-where">(in <a href="Bio.Seq-module.html">Bio.Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#matrix_element">matrix_element</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MIN_REPEAT">MIN_REPEAT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.General.SafeFitnessMutation-class.html#mutate">mutate()</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.General.SafeFitnessMutation-class.html">SafeFitnessMutation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#matrix_header">matrix_header</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#MIN_UNTIL">MIN_UNTIL</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.Simple.ConversionMutation-class.html#mutate">mutate()</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.Simple.ConversionMutation-class.html">ConversionMutation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#MATRIX_LINE">MATRIX_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#MIN_UNTIL">MIN_UNTIL</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.Simple.SinglePositionMutation-class.html#mutate">mutate()</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.Simple.SinglePositionMutation-class.html">SinglePositionMutation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#matrix_row">matrix_row</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy-module.html">Mindy</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Abstract.AbstractSelection-class.html#mutate_and_crossover">mutate_and_crossover()</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.Abstract.AbstractSelection-class.html">AbstractSelection</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#matrix_row">matrix_row()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation-module.html">Mutation</a><br />
<span class="index-where">(in <a href="Bio.GA-module.html">Bio.GA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#matrix_stats">matrix_stats</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.setup.my_install-class.html">my_install</a><br />
<span class="index-where">(in <a href="Martel.setup-module.html">Martel.setup</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html">MatrixInfo</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.File.SGMLStripper.MyParser-class.html">MyParser</a><br />
<span class="index-where">(in <a href="Bio.File.SGMLStripper-class.html">SGMLStripper</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#MAX_ACC">MAX_ACC</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Mysql_dbutils-class.html">Mysql_dbutils</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils-module.html">BioSQL.DBUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html#MAX_ALIGNMENTS">MAX_ALIGNMENTS</a><br />
<span class="index-where">(in <a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#minimum">minimum</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"> </td>
</tr>
</table>
</td></tr>
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