<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Identifier Index</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th bgcolor="#70b0f0" class="navbar-select" > Indices </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> </td> <td> <table 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href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Graphics.Distribution.LineDistribution-class.html">LineDistribution</a><br /> <span class="index-where">(in <a href="Bio.Graphics.Distribution-module.html">Bio.Graphics.Distribution</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#locus_line">locus_line</a><br /> <span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#labels">labels()</a><br /> <span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#linesize">linesize</a><br /> <span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#locus_line">locus_line</a><br /> <span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#lambda_stats">lambda_stats</a><br /> <span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Link-class.html">Link</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#locus_record">locus_record</a><br /> <span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#lambdasplit">lambdasplit()</a><br /> <span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Link-class.html">Link</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink-module.html">LocusLink</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#language">language()</a><br /> <span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Link-class.html">Link</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#locuslink_parser">locuslink_parser</a><br /> <span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#last_id">last_id()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Link-class.html">Link</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a><br /> <span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="BioSQL.DBUtils.Generic_dbutils-class.html#last_id">last_id()</a><br /> <span class="index-where">(in <a href="BioSQL.DBUtils.Generic_dbutils-class.html">Generic_dbutils</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#link">link()</a><br /> <span class="index-where">(in <a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="BioSQL.DBUtils.Mysql_dbutils-class.html#last_id">last_id()</a><br /> <span class="index-where">(in <a href="BioSQL.DBUtils.Mysql_dbutils-class.html">Mysql_dbutils</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.LinkId-class.html">LinkId</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="BioSQL.DBUtils.Pgdb_dbutils-class.html#last_id">last_id()</a><br /> <span class="index-where">(in <a href="BioSQL.DBUtils.Pgdb_dbutils-class.html">Pgdb_dbutils</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.LinkList-class.html">LinkList</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="BioSQL.DBUtils.Psycopg_dbutils-class.html#last_id">last_id()</a><br /> <span class="index-where">(in <a href="BioSQL.DBUtils.Psycopg_dbutils-class.html">Psycopg_dbutils</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.LinkMixin-class.html">LinkMixin</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Mixins-module.html">Bio.EUtils.Mixins</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#last_revision_date">last_revision_date()</a><br /> <span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkName-class.html">LinkName</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#lastrebasefile">lastrebasefile()</a><br /> <span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html">DictionaryBuilder</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut-module.html">LinkOut</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs-module.html">Bio.EUtils.DTDs</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Martel.LAX-module.html">LAX</a><br /> <span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.LinkSet-class.html">LinkSet</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Martel.LAX.LAX-class.html">LAX</a><br /> <span class="index-where">(in <a href="Martel.LAX-module.html">Martel.LAX</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkSet-class.html">LinkSet</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#log">log</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Martel.LAX.LAXAttrs-class.html">LAXAttrs</a><br /> <span class="index-where">(in <a href="Martel.LAX-module.html">Martel.LAX</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkSetDb-class.html">LinkSetDb</a><br /> <span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#LOG0">LOG0</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Martel.LAX.LAXPositions-class.html">LAXPositions</a><br /> <span class="index-where">(in <a href="Martel.LAX-module.html">Martel.LAX</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.LinkSetDb-class.html">LinkSetDb</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer-module.html">Layer</a><br /> <span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation-module.html">Bio.NeuralNetwork.BackPropagation</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.LinksLinkSet-class.html">LinksLinkSet</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#lazy_auto_immune_check">lazy_auto_immune_check()</a><br /> <span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Pathway.Rep.HashSet.HashSet-class.html#list">list()</a><br /> <span class="index-where">(in <a href="Bio.Pathway.Rep.HashSet.HashSet-class.html">HashSet</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SeqUtils.lcc-module.html">lcc</a><br /> <span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#list_ambiguous_codons">list_ambiguous_codons()</a><br /> <span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SeqUtils.lcc-module.html#lcc_mult">lcc_mult()</a><br /> <span class="index-where">(in <a href="Bio.SeqUtils.lcc-module.html">Bio.SeqUtils.lcc</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#list_any_ids">list_any_ids()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SeqUtils.lcc-module.html#lcc_simp">lcc_simp()</a><br /> <span class="index-where">(in <a href="Bio.SeqUtils.lcc-module.html">Bio.SeqUtils.lcc</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#list_biodatabase_names">list_biodatabase_names()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.LinkMixin-class.html#lcheck">lcheck()</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Mixins.LinkMixin-class.html">LinkMixin</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#list_bioentry_display_ids">list_bioentry_display_ids()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Decode-module.html#lchomp">lchomp()</a><br /> <span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#list_bioentry_ids">list_bioentry_ids()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#log10">log10</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.PDB.Vector%27.Vector-class.html#left_multiply">left_multiply()</a><br /> <span class="index-where">(in <a href="Bio.PDB.Vector%27.Vector-class.html">Vector</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#list_possible_proteins">list_possible_proteins()</a><br /> <span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.mathfns-module.html#LOG2">LOG2</a><br /> <span class="index-where">(in <a href="Bio.mathfns-module.html">Bio.mathfns</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Entrez.Parser.ListElement-class.html">ListElement</a><br /> <span class="index-where">(in <a href="Bio.Entrez.Parser-module.html">Bio.Entrez.Parser</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.HMM.Trainer.AbstractTrainer-class.html#log_likelihood">log_likelihood()</a><br /> <span class="index-where">(in <a href="Bio.HMM.Trainer.AbstractTrainer-class.html">AbstractTrainer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.listfns-module.html">listfns</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.HMM.DynamicProgramming.LogDPAlgorithms-class.html">LogDPAlgorithms</a><br /> <span class="index-where">(in <a href="Bio.HMM.DynamicProgramming-module.html">Bio.HMM.DynamicProgramming</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList.ListParser-class.html">ListParser</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.KeyWList-module.html">Bio.SwissProt.KeyWList</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Entrez.SerialSet-module.html#lists">lists</a><br /> <span class="index-where">(in <a href="Bio.Entrez.SerialSet-module.html">Bio.Entrez.SerialSet</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#listSimulations">listSimulations()</a><br /> <span class="index-where">(in <a href="Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html">SimCoalCache</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.Expression.Literal-class.html">Literal</a><br /> <span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.distance-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#LITERAL">LITERAL</a><br /> <span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#left_shift">left_shift</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#LITERAL">LITERAL</a><br /> <span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length">length()</a><br /> <span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html" onclick="show_private();">_AlignmentConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#LITERAL_IGNORE">LITERAL_IGNORE</a><br /> <span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#length">length()</a><br /> <span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#LITERAL_IGNORE">LITERAL_IGNORE</a><br /> <span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#logical_and">logical_and</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Compass._Consumer-class.html#lengths">lengths()</a><br /> <span class="index-where">(in <a href="Bio.Compass._Consumer-class.html" onclick="show_private();">_Consumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#little_gap">little_gap</a><br /> <span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.LinkMixin-class.html#llinks">llinks()</a><br /> <span class="index-where">(in <a href="Bio.EUtils.Mixins.LinkMixin-class.html">LinkMixin</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#LO">LO</a><br /> <span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#load">load()</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.WriteDB-class.html#load">load()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BaseDB.WriteDB-class.html">WriteDB</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.config._stanzaformat-module.html#load">load()</a><br /> <span class="index-where">(in <a href="Bio.config._stanzaformat-module.html">Bio.config._stanzaformat</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#load">load()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.distance-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.DBServer-class.html#load_database_sql">load_database_sql()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.DBServer-class.html">DBServer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#logical_not">logical_not</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#less">less</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Entrez.Parser.DataHandler-class.html#load_definitions">load_definitions()</a><br /> <span class="index-where">(in <a href="Bio.Entrez.Parser.DataHandler-class.html">DataHandler</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.config._support-module.html#load_module">load_module()</a><br /> <span class="index-where">(in <a href="Bio.config._support-module.html">Bio.config._support</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.Loader.DatabaseLoader-class.html#load_seqrecord">load_seqrecord()</a><br /> <span class="index-where">(in <a href="BioSQL.Loader.DatabaseLoader-class.html">DatabaseLoader</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.Loader-module.html">Loader</a><br /> <span class="index-where">(in <a href="BioSQL-module.html">BioSQL</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PopGen.Async.Local-module.html">Local</a><br /> <span class="index-where">(in <a href="Bio.PopGen.Async-module.html">Bio.PopGen.Async</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PopGen.Async.Local.Local-class.html">Local</a><br /> <span class="index-where">(in <a href="Bio.PopGen.Async.Local-module.html">Bio.PopGen.Async.Local</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.test.run_tests-module.html#local_test_main">local_test_main()</a><br /> <span class="index-where">(in <a href="Martel.test.run_tests-module.html">Martel.test.run_tests</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.distance-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SGMLExtractor.SGMLExtractor.LocalParser-class.html">LocalParser</a><br /> <span class="index-where">(in <a href="Bio.SGMLExtractor.SGMLExtractor-class.html">SGMLExtractor</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#logical_or">logical_or</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#less_equal">less_equal</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#LocalTime">LocalTime()</a><br /> <span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#letter_sum">letter_sum()</a><br /> <span class="index-where">(in <a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#localtime">localtime()</a><br /> <span class="index-where">(in <a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html">RebaseUpdate</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Alphabet-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Alphabet-class.html">Alphabet</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html">Location</a></td> <td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.ExtendedIUPACDNA-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.ExtendedIUPACDNA-class.html">ExtendedIUPACDNA</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.Location-module.html">Location</a><br /> <span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html">ExtendedIUPACProtein</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.Location.Location-class.html">Location</a><br /> <span class="index-where">(in <a href="Bio.Mindy.Location-module.html">Bio.Mindy.Location</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html">IUPACAmbiguousDNA</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#location">location</a><br /> <span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html">IUPACAmbiguousRNA</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.Feature-class.html#location">location()</a><br /> <span class="index-where">(in <a href="Bio.GFF.Feature-class.html">Feature</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.distance-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.IUPACProtein-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.IUPACProtein-class.html">IUPACProtein</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.FeatureAggregate-class.html#location">location()</a><br /> <span class="index-where">(in <a href="Bio.GFF.FeatureAggregate-class.html">FeatureAggregate</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html#logical_xor">logical_xor</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html">IUPACUnambiguousDNA</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#location">location()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer-module.html#logistic_function">logistic_function()</a><br /> <span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer-module.html">Bio.NeuralNetwork.BackPropagation.Layer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html">IUPACUnambiguousRNA</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#location">location()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html">LogisticRegression</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.HPModel-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.HPModel-class.html">HPModel</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.easy.LocationFromCoords-class.html">LocationFromCoords</a></td> <td width="33%" class="link-index"><a href="Bio.LogisticRegression.LogisticRegression-class.html">LogisticRegression</a><br /> <span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy10-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy10-class.html">Murphy10</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.easy.LocationFromString-class.html">LocationFromString</a></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.OpenDB-class.html#lookup">lookup()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BaseDB.OpenDB-class.html">OpenDB</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy15-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy15-class.html">Murphy15</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GFF.easy.LocationJoin-class.html">LocationJoin</a></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#lookup">lookup()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy4-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy4-class.html">Murphy4</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser-module.html">LocationParser</a><br /> <span class="index-where">(in <a href="Bio.GenBank-module.html">Bio.GenBank</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#LOOP">LOOP</a><br /> <span class="index-where">(in <a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html">MMCIF2Dict</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy8-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy8-class.html">Murphy8</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a><br /> <span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LowBound-class.html">LowBound</a><br /> <span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.PC5-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.Reduced.PC5-class.html">PC5</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.LocationParserError-class.html">LocationParserError</a></td> <td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#lower_case_letter">lower_case_letter</a><br /> <span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.SecondaryStructure-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.SecondaryStructure-class.html">SecondaryStructure</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a><br /> <span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html">lowess</a><br /> <span class="index-where">(in <a href="Bio.Statistics-module.html">Bio.Statistics</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.SingleLetterAlphabet-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.SingleLetterAlphabet-class.html">SingleLetterAlphabet</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PopGen.GenePop._RecordConsumer-class.html#loci_name">loci_name()</a><br /> <span class="index-where">(in <a href="Bio.PopGen.GenePop._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#lowess">lowess()</a><br /> <span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Alphabet.ThreeLetterProtein-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.Alphabet.ThreeLetterProtein-class.html">ThreeLetterProtein</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#locus">locus</a><br /> <span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.LowQualityBlastError-class.html">LowQualityBlastError</a><br /> <span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html">SchemaDNAAlphabet</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#locus">locus()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Ais.Lymphocyte-class.html">Lymphocyte</a><br /> <span class="index-where">(in <a href="Bio.Ais-module.html">Bio.Ais</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SeqUtils.ProteinX-class.html#letters">letters</a><br /> <span class="index-where">(in <a href="Bio.SeqUtils.ProteinX-class.html">ProteinX</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#locus">locus()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#lymphocyte_factory">lymphocyte_factory()</a><br /> <span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#levin">levin</a><br /> <span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html">locus_format</a><br /> <span class="index-where">(in <a href="Bio.LocusLink-module.html">Bio.LocusLink</a>)</span></td> <td width="33%" class="link-index"> </td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.FormattedSeq-class.html#linearise">linearise()</a><br /> <span class="index-where">(in <a href="Bio.Restriction.Restriction.FormattedSeq-class.html">FormattedSeq</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#locus_keys">locus_keys</a><br /> <span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td> <td width="33%" class="link-index"> </td> </tr> </table> </td></tr> </table> <br /><br /><!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th bgcolor="#70b0f0" class="navbar-select" > Indices </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 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