<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Identifier Index</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th bgcolor="#70b0f0" class="navbar-select" > Indices </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="identifier-index-K.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <table border="0" width="100%"> <tr valign="bottom"><td> <h1 class="epydoc">Identifier Index</h1> </td><td> [ <a href="identifier-index-A.html">A</a> <a href="identifier-index-B.html">B</a> <a href="identifier-index-C.html">C</a> <a href="identifier-index-D.html">D</a> <a href="identifier-index-E.html">E</a> <a href="identifier-index-F.html">F</a> <a href="identifier-index-G.html">G</a> <a href="identifier-index-H.html">H</a> <a href="identifier-index-I.html">I</a> <a href="identifier-index-J.html">J</a> <a href="identifier-index-K.html">K</a> <a href="identifier-index-L.html">L</a> <a href="identifier-index-M.html">M</a> <a href="identifier-index-N.html">N</a> <a href="identifier-index-O.html">O</a> <a href="identifier-index-P.html">P</a> <a href="identifier-index-Q.html">Q</a> <a href="identifier-index-R.html">R</a> <a href="identifier-index-S.html">S</a> <a href="identifier-index-T.html">T</a> <a href="identifier-index-U.html">U</a> <a href="identifier-index-V.html">V</a> <a href="identifier-index-W.html">W</a> <a href="identifier-index-X.html">X</a> <a href="identifier-index-Y.html">Y</a> Z <a href="identifier-index-_.html">_</a> ] </td></table> <table border="0" width="100%"> <tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="K">K</a></h2></td> <td valign="top"> <table class="link-index" width="100%" border="1"> <tr> <td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params">ka_params()</a><br /> <span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" onclick="show_private();">_DatabaseReportConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList-module.html">KeyWList</a><br /> <span class="index-where">(in <a href="Bio.SwissProt-module.html">Bio.SwissProt</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params_gap">ka_params_gap()</a><br /> <span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" onclick="show_private();">_DatabaseReportConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.DictLookup-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BaseDB.DictLookup-class.html">DictLookup</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList._ListConsumer-class.html#keyword">keyword()</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.KeyWList._ListConsumer-class.html" onclick="show_private();">_ListConsumer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#kcluster">kcluster()</a><br /> <span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.OpenDB-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BaseDB.OpenDB-class.html">OpenDB</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#keyword">keyword()</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParamData-module.html#kd">kd</a><br /> <span class="index-where">(in <a href="Bio.SeqUtils.ProtParamData-module.html">Bio.SeqUtils.ProtParamData</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html">PrimaryNamespace</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#keyword">keyword()</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KDTree-module.html">KDTree</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html">SecondaryNamespace</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#keywords">keywords()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a><br /> <span class="index-where">(in <a href="Bio.KDTree.CKDTree-module.html">Bio.KDTree.CKDTree</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.PrimaryNamespace-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.FlatDB.PrimaryNamespace-class.html">PrimaryNamespace</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#keywords">keywords()</a><br /> <span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KDTree.KDTree-module.html">KDTree</a><br /> <span class="index-where">(in <a href="Bio.KDTree-module.html">Bio.KDTree</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.PrimaryTable-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.FlatDB.PrimaryTable-class.html">PrimaryTable</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#keywords_block">keywords_block</a><br /> <span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a></td> <td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.SecondaryNamespace-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.FlatDB.SecondaryNamespace-class.html">SecondaryNamespace</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#kill">kill()</a><br /> <span class="index-where">(in <a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTreePtr-class.html">KDTreePtr</a><br /> <span class="index-where">(in <a href="Bio.KDTree.CKDTree-module.html">Bio.KDTree.CKDTree</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.SecondaryTable-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Mindy.FlatDB.SecondaryTable-class.html">SecondaryTable</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN-module.html">kNN</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KEGG-module.html">KEGG</a><br /> <span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html">AbstractPropertyMap</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.kNN.kNN-class.html">kNN</a><br /> <span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KEGG-module.html#KEGG_DATA_LENGTH">KEGG_DATA_LENGTH</a><br /> <span class="index-where">(in <a href="Bio.KEGG-module.html">Bio.KEGG</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Prosite.ExPASyDictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Prosite.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#KNOWN_NEXUS_BLOCKS">KNOWN_NEXUS_BLOCKS</a><br /> <span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KEGG-module.html#KEGG_ITEM_LENGTH">KEGG_ITEM_LENGTH</a><br /> <span class="index-where">(in <a href="Bio.KEGG-module.html">Bio.KEGG</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.HMM.Trainer.KnownStateTrainer-class.html">KnownStateTrainer</a><br /> <span class="index-where">(in <a href="Bio.HMM.Trainer-module.html">Bio.HMM.Trainer</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.KEGG-module.html#KEGG_LINE_LENGTH">KEGG_LINE_LENGTH</a><br /> <span class="index-where">(in <a href="Bio.KEGG-module.html">Bio.KEGG</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.PubMed.Dictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.PubMed.Dictionary-class.html">Dictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#KW">KW</a><br /> <span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#kernel_block">kernel_block</a><br /> <span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.Dictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.SProt.Dictionary-class.html">Dictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#KW">KW</a><br /> <span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#kernel_line">kernel_line</a><br /> <span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#KW">KW</a><br /> <span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#kernel_tag">kernel_tag</a><br /> <span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.config.Registry.Registry-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.config.Registry.Registry-class.html">Registry</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#KW_block">KW_block</a><br /> <span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#kernel_tag">kernel_tag()</a><br /> <span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#KW_block">KW_block</a><br /> <span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Translate-module.html#key">key</a><br /> <span class="index-where">(in <a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td> <td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.DBServer-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="BioSQL.BioSeqDatabase.DBServer-class.html">DBServer</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#KW_block">KW_block</a><br /> <span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td> <td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#KW_block">KW_block</a><br /> <span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td> </tr> <tr> <td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html#keys">keys()</a><br /> <span class="index-where">(in <a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html" onclick="show_private();">_BaseMultiDict</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.GenBank.utils.FeatureValueCleaner-class.html#keys_to_process">keys_to_process</a><br /> <span class="index-where">(in <a href="Bio.GenBank.utils.FeatureValueCleaner-class.html">FeatureValueCleaner</a>)</span></td> <td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#KW_line">KW_line</a><br /> <span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td> </tr> </table> </td></tr> </table> <br /><br /><!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th bgcolor="#70b0f0" class="navbar-select" > Indices </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:17 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>