<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Identifier Index</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%"> </td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="identifier-index-G.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="G">G</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.GA-module.html">GA</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.DBObject-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry.DBObject-class.html">DBObject</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html#get_seq_by_num">get_seq_by_num()</a><br />
<span class="index-where">(in <a href="Bio.Align.Generic.Alignment-class.html">Alignment</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.SummaryInfo-class.html#gap_consensus">gap_consensus()</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo.SummaryInfo-class.html">SummaryInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.Registry.Registry-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.config.Registry.Registry-class.html">Registry</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_primary_id">get_Seq_by_primary_id()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_penalties">gap_penalties()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_ver">get_Seq_by_ver()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#gap_penalties_stats">gap_penalties_stats</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Tokenizer-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Tokenizer-class.html">Tokenizer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#get_seqres_file">get_seqres_file()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_trigger">gap_trigger()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html#get_alignment_length">get_alignment_length()</a><br />
<span class="index-where">(in <a href="Bio.Align.Generic.Alignment-class.html">Alignment</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seqs_by_acc">get_Seqs_by_acc()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff">gap_x_dropoff()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_all">get_all()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html#get_sequence">get_sequence()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff_final">gap_x_dropoff_final()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_all">get_all()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_serial_number">get_serial_number()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#gaponly">gaponly()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html#get_all">get_all()</a><br />
<span class="index-where">(in <a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_sigatm">get_sigatm()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Gapped-class.html">Gapped</a></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#get_all_entries">get_all_entries()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_siguij">get_siguij()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#gapped">gapped()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" onclick="show_private();">_DatabaseReportConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_all_ids">get_all_ids()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#get_sourcefile">get_sourcefile()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#gapped_lambda_stats">gapped_lambda_stats</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html#get_all_ids">get_all_ids()</a><br />
<span class="index-where">(in <a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#get_sprot_raw">get_sprot_raw()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_BASE_INDENT">GB_BASE_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#get_all_obsolete">get_all_obsolete()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#get_sprot_raw">get_sprot_raw()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_FEATURE_INDENT">GB_FEATURE_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_all_primary_ids">get_all_primary_ids()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#get_start_end">get_start_end()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_FEATURE_INTERNAL_INDENT">GB_FEATURE_INTERNAL_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html#get_all_seqs">get_all_seqs()</a><br />
<span class="index-where">(in <a href="Bio.Align.Generic.Alignment-class.html">Alignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#get_status_list">get_status_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#gb_genome">gb_genome</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.NetCatch-class.html#get_all_urls">get_all_urls()</a><br />
<span class="index-where">(in <a href="Bio.NetCatch.NetCatch-class.html">NetCatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#get_step_2d">get_step_2d()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_INTERNAL_INDENT">GB_INTERNAL_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_all_values">get_all_values()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIFParser.MMCIFParser-class.html#get_structure">get_structure()</a><br />
<span class="index-where">(in <a href="Bio.PDB.MMCIFParser.MMCIFParser-class.html">MMCIFParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_LINE_LENGTH">GB_LINE_LENGTH</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_altloc">get_altloc()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27.PDBParser-class.html#get_structure">get_structure()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBParser%27.PDBParser-class.html">PDBParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#gb_nucleotide">gb_nucleotide</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#get_amino_acids_percent">get_amino_acids_percent()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#get_structure">get_structure()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_OTHER_INTERNAL_INDENT">GB_OTHER_INTERNAL_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_anisou">get_anisou()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#get_subseq_as_string">get_subseq_as_string()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#gb_protein">gb_protein</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27.Vector-class.html#get_array">get_array()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27.Vector-class.html">Vector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#get_succ">get_succ()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#GB_SEQUENCE_INDENT">GB_SEQUENCE_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.DBGroup-class.html#get_as">get_as()</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry.DBGroup-class.html">DBGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.DispatchHandler-class.html#get_supported_features">get_supported_features()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.DispatchHandler-class.html">DispatchHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#GC">GC()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.DBObject-class.html#get_as">get_as()</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry.DBObject-class.html">DBObject</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#get_surface">get_surface()</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#GC123">GC123()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Chain.Chain-class.html#get_atoms">get_atoms()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Chain.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html#get_tau_list">get_tau_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#GC_Frame">GC_Frame()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Model.Model-class.html#get_atoms">get_atoms()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Model.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#get_taxa">get_taxa()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#GC_skew">GC_skew()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Structure.Structure-class.html#get_atoms">get_atoms()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Structure.Structure-class.html">Structure</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#get_terminals">get_terminals()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CheckSum-module.html#gcg">gcg()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CheckSum-module.html">Bio.SeqUtils.CheckSum</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#get_attribute">get_attribute()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.Comment-class.html#get_text">get_text()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.Comment-class.html">Comment</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#gen_iterator">gen_iterator()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.ClassHolder-class.html#get_attribute">get_attribute()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.ClassHolder-class.html">ClassHolder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#get_text">get_text()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank-module.html">GenBank</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.FunctionHolder-class.html#get_attribute">get_attribute()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.FunctionHolder-class.html">FunctionHolder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#get_text">get_text()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html">genbank</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_bfactor">get_bfactor()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html#get_theta_list">get_theta_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html">genbank</a><br />
<span class="index-where">(in <a href="Bio.expressions-module.html">Bio.expressions</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#get_blank_emissions">get_blank_emissions()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html">HiddenMarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_top">get_top()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.genbank-module.html">genbank</a><br />
<span class="index-where">(in <a href="Bio.formatdefs-module.html">Bio.formatdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#get_blank_transitions">get_blank_transitions()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html">HiddenMarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_top_percentage">get_top_percentage()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.genbank-module.html#genbank">genbank</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.genbank-module.html">Bio.formatdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html#get_builder">get_builder()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html">BaseSeqRecordIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27.PDBParser-class.html#get_trailer">get_trailer()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBParser%27.PDBParser-class.html">PDBParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank-module.html#GENBANK_INDENT">GENBANK_INDENT</a><br />
<span class="index-where">(in <a href="Bio.GenBank-module.html">Bio.GenBank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_by_id">get_by_id()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#get_transformed">get_transformed()</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.genbank-module.html#genbank_records">genbank_records</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.genbank-module.html">Bio.formatdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html#get_ca_list">get_ca_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Selection-module.html#get_unique_parents">get_unique_parents()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Selection-module.html">Bio.PDB.Selection</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.genbank-module.html#genbank_release">genbank_release</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.genbank-module.html">Bio.formatdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Structure.Structure-class.html#get_chains">get_chains()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Structure.Structure-class.html">Structure</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Chain.Chain-class.html#get_unpacked_list">get_unpacked_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Chain.Chain-class.html">Chain</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank-module.html#GENBANK_SPACER">GENBANK_SPACER</a><br />
<span class="index-where">(in <a href="Bio.GenBank-module.html">Bio.GenBank</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.DispatchHandler-class.html#get_characters">get_characters()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.DispatchHandler-class.html">DispatchHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.Residue-class.html#get_unpacked_list">get_unpacked_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Residue.Residue-class.html">Residue</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.InsdcIO-module.html#GenBankCdsFeatureIterator">GenBankCdsFeatureIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.InsdcIO-module.html">Bio.SeqIO.InsdcIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#get_characters">get_characters()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.NetCatch-class.html#get_urls_by_index">get_urls_by_index()</a><br />
<span class="index-where">(in <a href="Bio.NetCatch.NetCatch-class.html">NetCatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.InsdcIO-module.html#GenBankIterator">GenBankIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.InsdcIO-module.html">Bio.SeqIO.InsdcIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#get_children">get_children()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.NetCatch-class.html#get_urls_by_label">get_urls_by_label()</a><br />
<span class="index-where">(in <a href="Bio.NetCatch.NetCatch-class.html">NetCatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.GenBankScanner-class.html">GenBankScanner</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner-module.html">Bio.GenBank.Scanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#get_chr_template">get_chr_template()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.NetCatch-class.html#get_urls_by_range">get_urls_by_range()</a><br />
<span class="index-where">(in <a href="Bio.NetCatch.NetCatch-class.html">NetCatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genBlank">genBlank()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html#get_collection_id">get_collection_id()</a><br />
<span class="index-where">(in <a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_vector">get_vector()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genClass">genClass()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.SummaryInfo-class.html#get_column">get_column()</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo.SummaryInfo-class.html">SummaryInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_vocabulary_names">get_vocabulary_names()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#genClass">genClass()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html#get_column">get_column()</a><br />
<span class="index-where">(in <a href="Bio.Align.Generic.Alignment-class.html">Alignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#get_xy_from_matrix">get_xy_from_matrix()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genComment">genComment()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_coord">get_coord()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html#getall">getall()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html" onclick="show_private();">_BaseMultiDict</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#genComment">genComment()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27.Fragment-class.html#get_coords">get_coords()</a><br />
<span class="index-where">(in <a href="Bio.PDB.FragmentMapper%27.Fragment-class.html">Fragment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#getall">getall()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene-module.html">Gene</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork-module.html">Bio.NeuralNetwork</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html#get_count">get_count()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#getAscendent">getAscendent()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#GENE">GENE()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_count">get_count()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getAscendentFromSQL">getAscendentFromSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#GENE_ID">GENE_ID()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html#get_count">get_count()</a><br />
<span class="index-where">(in <a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#getAstralDomainsFromFile">getAstralDomainsFromFile()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#gene_name">gene_name()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#get_data">get_data()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#getAstralDomainsFromSQL">getAstralDomainsFromSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#gene_name">gene_name()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils-module.html#get_dbutils">get_dbutils()</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils-module.html">BioSQL.DBUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.SeqMap-class.html#getAtoms">getAtoms()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf.SeqMap-class.html">SeqMap</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#gene_symbol">gene_symbol()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#get_demography_template">get_demography_template()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#getblock">getblock()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html">DictionaryBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop-module.html">GenePop</a><br />
<span class="index-where">(in <a href="Bio.PopGen-module.html">Bio.PopGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_differing">get_differing()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#getChildren">getChildren()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.General-module.html">General</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover-module.html">Bio.GA.Crossover</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#get_document">get_document()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#getDescendents">getDescendents()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.General-module.html">General</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation-module.html">Bio.GA.Mutation</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#get_element">get_element()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getDescendentsFromSQL">getDescendentsFromSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.GeneralPoint-module.html">GeneralPoint</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover-module.html">Bio.GA.Crossover</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#get_element">get_element()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getDomainBySid">getDomainBySid()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html">GeneralPointCrossover</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover.GeneralPoint-module.html">Bio.GA.Crossover.GeneralPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.Record-module.html#get_entry">get_entry()</a><br />
<span class="index-where">(in <a href="Bio.ECell.Record-module.html">Bio.ECell.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getDomainFromSQL">getDomainFromSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html">Generate</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.BisectFile-class.html#get_entry">get_entry()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB.BisectFile-class.html">BisectFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getDomains">getDomains()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate">generate()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_entry_description">get_entry_description()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize.GetErrorPos-class.html">GetErrorPos</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_alt">generate_alt()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#get_error">get_error()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html">OutputLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#getfiles">getfiles()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html">RebaseUpdate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_any">generate_any()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#get_escape_length">get_escape_length()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#getLength">getLength()</a><br />
<span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_assert">generate_assert()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.DirectoryRetriever-class.html#get_file">get_file()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.Async.DirectoryRetriever-class.html">DirectoryRetriever</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#getName">getName()</a><br />
<span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_at_beginning">generate_at_beginning()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.FileRetriever-class.html#get_file">get_file()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.Async.FileRetriever-class.html">FileRetriever</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#getnode">getnode()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_at_end">generate_at_end()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.FileRetriever-class.html#get_File_list">get_File_list()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.Async.FileRetriever-class.html">FileRetriever</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getNodeBySunid">getNodeBySunid()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_debug">generate_debug()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_full_id">get_full_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse.GetObject-class.html">GetObject</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_dot">generate_dot()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_full_id">get_full_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#getParent">getParent()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_eol">generate_eol()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_fullname">get_fullname()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#getRoot">getRoot()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_group">generate_group()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#get_generator">get_generator()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#getSeq">getSeq()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_groupref">generate_groupref()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27.PDBParser-class.html#get_header">get_header()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBParser%27.PDBParser-class.html">PDBParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#getSeqBySid">getSeqBySid()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#generate_index">generate_index()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html">CodonAdaptationIndex</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#get_id">get_id()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.SeqMapIndex-class.html#getSeqMap">getSeqMap()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf.SeqMapIndex-class.html">SeqMapIndex</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_island_mat">generate_island_mat()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_id">get_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#getSimulation">getSimulation()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html">SimCoalCache</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_join_events">generate_join_events()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_id">get_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html">DisorderedEntityWrapper</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Config.DatabaseDict-class.html#gettype">gettype()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Config.DatabaseDict-class.html">DatabaseDict</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_literal">generate_literal()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_id">get_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#getType">getType()</a><br />
<span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_max_repeat">generate_max_repeat()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27.Fragment-class.html#get_id">get_id()</a><br />
<span class="index-where">(in <a href="Bio.PDB.FragmentMapper%27.Fragment-class.html">Fragment</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#getValue">getValue()</a><br />
<span class="index-where">(in <a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_model">generate_model()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html#get_id_dictionary">get_id_dictionary()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html">BaseSeqRecordIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.SubPattern-class.html#getwidth">getwidth()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.SubPattern-class.html">SubPattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_named_max_repeat">generate_named_max_repeat()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html#get_id_dictionary">get_id_dictionary()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html">FunctionIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF-module.html">GFF</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_null_mat">generate_null_mat()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html#get_id_dictionary">get_id_dictionary()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html">SimpleIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#gi">gi</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_null_op">generate_null_op()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html#get_indices">get_indices()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#gi">gi()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_parser">generate_parser()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#get_indices">get_indices()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#gi">gi()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_pass_through">generate_pass_through()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html#get_info">get_info()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_sequence-class.html#global_alphabet">global_alphabet</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_sequence-class.html">Handle_sequence</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_seq">generate_seq()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#get_init_rms">get_init_rms()</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#GN">GN</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_simcoal_from_template">generate_simcoal_from_template()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.Motif-class.html#get_instance_by_name">get_instance_by_name()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#GN">GN</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#generate_ssm2d_mat">generate_ssm2d_mat()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro-module.html#get_interpro_entry">get_interpro_entry()</a><br />
<span class="index-where">(in <a href="Bio.InterPro-module.html">Bio.InterPro</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#GN">GN</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_str">generate_str()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_iterator">get_iterator()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#GN_block">GN_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#generate_table">generate_table</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#get_iterator">get_iterator()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureAlignment%27.StructureAlignment-class.html">StructureAlignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#GN_block">GN_block</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Generate-module.html#generate_table">generate_table</a><br />
<span class="index-where">(in <a href="Martel.test.test_Generate-module.html">Martel.test.test_Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_level">get_level()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#GN_block">GN_block</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Evolver.GenerationEvolver-class.html">GenerationEvolver</a><br />
<span class="index-where">(in <a href="Bio.GA.Evolver-module.html">Bio.GA.Evolver</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_level">get_level()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#gnl_id">gnl_id</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.GeneratorState-class.html">GeneratorState</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_list">get_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Gobase-module.html">Gobase</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Gobase.GeneRecord-class.html">GeneRecord</a><br />
<span class="index-where">(in <a href="Bio.Gobase-module.html">Bio.Gobase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#get_maps">get_maps()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureAlignment%27.StructureAlignment-class.html">StructureAlignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#gonnet">gonnet</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Align.Generic-module.html">Generic</a><br />
<span class="index-where">(in <a href="Bio.Align-module.html">Bio.Align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#get_markov_model">get_markov_model()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs.GrabElements-class.html">GrabElements</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#generic_alphabet">generic_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.optimize-module.html#get_merge_text">get_merge_text()</a><br />
<span class="index-where">(in <a href="Martel.optimize-module.html">Martel.optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath-module.html">Bio.Mindy.XPath</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#generic_by_id">generic_by_id</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_more">get_more()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#grant">grant</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#generic_by_name">generic_by_name</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTRecord-class.html#get_motif_by_name">get_motif_by_name()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MASTRecord-class.html">MASTRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph-module.html">Graph</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep-module.html">Bio.Pathway.Rep</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Generic_dbutils-class.html">Generic_dbutils</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils-module.html">BioSQL.DBUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MEMERecord-class.html#get_motif_by_name">get_motif_by_name()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MEMERecord-class.html">MEMERecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.Graph-module.html">Bio.Pathway.Rep.Graph</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#generic_dna">generic_dna</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTRecord-class.html#get_motif_matches">get_motif_matches()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MASTRecord-class.html">MASTRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#graph_structure_block">graph_structure_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#generic_info1">generic_info1</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTRecord-class.html#get_motif_matches_for_sequence">get_motif_matches_for_sequence()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MASTRecord-class.html">MASTRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#graph_structure_heading">graph_structure_heading</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#generic_info2">generic_info2</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_name">get_name()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#graph_structure_line">graph_structure_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#generic_nucleotide">generic_nucleotide</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#get_next">get_next()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics-module.html">Graphics</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#generic_protein">generic_protein</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_occupancy">get_occupancy()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#gravy">gravy()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#generic_rna">generic_rna</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#get_original_taxon_order">get_original_taxon_order()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Application-module.html#generic_run">generic_run()</a><br />
<span class="index-where">(in <a href="Bio.Application-module.html">Bio.Application</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#get_parent">get_parent()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#generic_term">generic_term</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#get_parent">get_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Transcribe-module.html#generic_transcriber">generic_transcriber</a><br />
<span class="index-where">(in <a href="Bio.Transcribe-module.html">Bio.Transcribe</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_parent">get_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html">DisorderedEntityWrapper</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTBuilder-class.html">GenericASTBuilder</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#get_parent">get_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTMatcher-class.html">GenericASTMatcher</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#get_parser">get_parser()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversal-class.html">GenericASTTraversal</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html#get_phi_psi_list">get_phi_psi_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversalPruningException-class.html">GenericASTTraversalPruningException</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#get_prev">get_prev()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#greater">greater</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_PrimarySeq_stream">get_PrimarySeq_stream()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericScanner-class.html">GenericScanner</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark-module.html">Bio.Parsers.spark</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#get_prodoc_entry">get_prodoc_entry()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools-module.html">GenericTools</a><br />
<span class="index-where">(in <a href="Bio.GFF-module.html">Bio.GFF</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#get_prodoc_entry">get_prodoc_entry()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#genetic">genetic</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#get_prosite_entry">get_prosite_entry()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html">GeneticAlgorithmFinder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#get_prosite_entry">get_prosite_entry()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genFunc">genFunc()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#get_prosite_raw">get_prosite_raw()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#genFunc">genFunc()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#get_prosite_raw">get_prosite_raw()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genImport">genImport()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.DateRange-class.html#get_query_params">get_query_params()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.DateRange-class.html">DateRange</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#greater_equal">greater_equal</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#genImport">genImport()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.WithinNDays-class.html#get_query_params">get_query_params()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.WithinNDays-class.html">WithinNDays</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Group-class.html">Group</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#genMethod">genMethod()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html#get_radii">get_radii()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#group">group()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#genMethod">genMethod()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#get_radii">get_radii()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Group">Group()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#genome_genbank_eutils">genome_genbank_eutils</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_random">get_random()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Expression-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Expression-class.html">Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Geo-module.html">Geo</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#get_recent_changes">get_recent_changes()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.ExpressionList-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ExpressionList-class.html">ExpressionList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.PSSM-class.html#get_residue">get_residue()</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo.PSSM-class.html">PSSM</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Group-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Group-class.html">Group</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.AmbiguousForwardTable-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.AmbiguousForwardTable-class.html">AmbiguousForwardTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Model.Model-class.html#get_residues">get_residues()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Model.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.HeaderFooter-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.HeaderFooter-class.html">HeaderFooter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html" onclick="show_private();">_BaseMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Structure.Structure-class.html#get_residues">get_residues()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Structure.Structure-class.html">Structure</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.MaxRepeat-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.MaxRepeat-class.html">MaxRepeat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.Residue-class.html#get_resname">get_resname()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Residue.Residue-class.html">Residue</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.ParseRecords-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ParseRecords-class.html">ParseRecords</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27.Fragment-class.html#get_resname_list">get_resname_list()</a><br />
<span class="index-where">(in <a href="Bio.PDB.FragmentMapper%27.Fragment-class.html">Fragment</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.PassThrough-class.html#group_names">group_names()</a><br />
<span class="index-where">(in <a href="Martel.Expression.PassThrough-class.html">PassThrough</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.DictLookup-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BaseDB.DictLookup-class.html">DictLookup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Application.ApplicationResult-class.html#get_result">get_result()</a><br />
<span class="index-where">(in <a href="Bio.Application.ApplicationResult-class.html">ApplicationResult</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re.GroupNames-class.html">GroupNames</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.ExPASyDictionary-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.Async-class.html#get_result">get_result()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.Async.Async-class.html">Async</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.GroupRef-class.html">GroupRef</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#get_rms">get_rms()</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#GROUPREF">GROUPREF</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PubMed.Dictionary-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.PubMed.Dictionary-class.html">Dictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#get_rotran">get_rotran()</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#GROUPREF">GROUPREF</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.Residue-class.html#get_segid">get_segid()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Residue.Residue-class.html">Residue</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#GROUPREF_IGNORE">GROUPREF_IGNORE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html">DictionaryBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#get_segment_info">get_segment_info()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#GROUPREF_IGNORE">GROUPREF_IGNORE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.MissingTable-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.MissingTable-class.html">MissingTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA.PSEA-class.html#get_seq">get_seq()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA.PSEA-class.html">PSEA</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#groups">groups()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_acc">get_Seq_by_acc()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#guess_gaps">guess_gaps()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.DBGroup-class.html#get">get()</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry.DBGroup-class.html">DBGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_id">get_Seq_by_id()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"> </td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:17 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
