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<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="C">C</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#C">C</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.RecordParser-class.html#close">close()</a><br />
<span class="index-where">(in <a href="Martel.Parser.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.MenuName-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.MenuName-class.html">MenuName</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#ca_depth">ca_depth()</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#close_dict">close_dict</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Name-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Name-class.html">Name</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Cache-module.html">Cache</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#close_list">close_list</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.SingleToken-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.SingleToken-class.html">SingleToken</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#cai_for_gene">cai_for_gene()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html">CodonAdaptationIndex</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re.GroupNames-class.html#closegroup">closegroup()</a><br />
<span class="index-where">(in <a href="Martel.convert_re.GroupNames-class.html">GroupNames</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.TermCount-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.TermCount-class.html">TermCount</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html#calc_affine_penalty">calc_affine_penalty()</a><br />
<span class="index-where">(in <a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Pattern-class.html#closegroup">closegroup()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Pattern-class.html">Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.eInfoResult-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.eInfoResult-class.html">eInfoResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#calc_angle">calc_angle()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Clustalw.ClustalAlignment-class.html">ClustalAlignment</a><br />
<span class="index-where">(in <a href="Bio.Clustalw-module.html">Bio.Clustalw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Attribute-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Attribute-class.html">Attribute</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#calc_dihedral">calc_dihedral()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.ClustalIO-module.html">ClustalIO</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.DbFrom-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.DbFrom-class.html">DbFrom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#calculate">calculate()</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.ClustalIO-module.html">ClustalIO</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.DbTo-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.DbTo-class.html">DbTo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#calculate">calculate()</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.ClustalIO.ClustalIterator-class.html">ClustalIterator</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.ClustalIO-module.html">Bio.AlignIO.ClustalIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.ERROR-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.ERROR-class.html">ERROR</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#calculate">calculate()</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.ClustalIO-module.html#ClustalIterator">ClustalIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.ClustalIO-module.html">Bio.SeqIO.ClustalIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.IconUrl-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.IconUrl-class.html">IconUrl</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#calculate">calculate()</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Clustalw-module.html">Clustalw</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Id-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Id-class.html">Id</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html#calculate_fitness">calculate_fitness()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html">DifferentialSchemaFitness</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.ClustalIO.ClustalWriter-class.html">ClustalWriter</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.ClustalIO-module.html">Bio.AlignIO.ClustalIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.IdCheckList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.IdCheckList-class.html">IdCheckList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html#calculate_fitness">calculate_fitness()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html">MostCountSchemaFitness</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.ClustalIO.ClustalWriter-class.html">ClustalWriter</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.ClustalIO-module.html">Bio.SeqIO.ClustalIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.IdList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.IdList-class.html">IdList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CALL">CALL</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Cluster-module.html">Cluster</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.IdUrlList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.IdUrlList-class.html">IdUrlList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CALL">CALL</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#clustercentroids">clustercentroids()</a><br />
<span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.IdUrlSet-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.IdUrlSet-class.html">IdUrlSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.HandleRepeatCount-class.html#call">call()</a><br />
<span class="index-where">(in <a href="Martel.Generate.HandleRepeatCount-class.html">HandleRepeatCount</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#clusterdistance">clusterdistance()</a><br />
<span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Info-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Info-class.html">Info</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#call_method">call_method()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#Cmodulo">Cmodulo</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Link-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Link-class.html">Link</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#call_number">call_number()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#cmp_dicts">cmp_dicts()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkName-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.LinkName-class.html">LinkName</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Callback-class.html">Callback</a><br />
<span class="index-where">(in <a href="Martel.Dispatch-module.html">Martel.Dispatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#cmp_sccs">cmp_sccs()</a><br />
<span class="index-where">(in <a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkSet-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.LinkSet-class.html">LinkSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.HandleRepeatCount-class.html#calltag">calltag()</a><br />
<span class="index-where">(in <a href="Martel.Generate.HandleRepeatCount-class.html">HandleRepeatCount</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#co_data">co_data()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.LinkSetDb-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.LinkSetDb-class.html">LinkSetDb</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#candidate_line">candidate_line</a><br />
<span class="index-where">(in <a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#co_header">co_header()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Name-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Name-class.html">Name</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.CaPPBuilder-class.html">CaPPBuilder</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html">CodonAdaptationIndex</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage-module.html">Bio.SeqUtils.CodonUsage</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.NameAbbr-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.NameAbbr-class.html">NameAbbr</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CAPS-module.html">CAPS</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#CODONPOSITIONS">CODONPOSITIONS</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.ObjUrl-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.ObjUrl-class.html">ObjUrl</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CAPS.CAPSMap-class.html">CAPSMap</a><br />
<span class="index-where">(in <a href="Bio.CAPS-module.html">Bio.CAPS</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage-module.html#CodonsDict">CodonsDict</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage-module.html">Bio.SeqUtils.CodonUsage</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Provider-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Provider-class.html">Provider</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_macros.Capture-class.html">Capture</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html">CodonTable</a><br />
<span class="index-where">(in <a href="Bio.Data-module.html">Bio.Data</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Score-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Score-class.html">Score</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.HashSet.HashSet-class.html#cartesian">cartesian()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.HashSet.HashSet-class.html">HashSet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.CodonTable-class.html">CodonTable</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.SubjectType-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.SubjectType-class.html">SubjectType</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#cas_registry_number">cas_registry_number()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage-module.html">CodonUsage</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Url-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.Url-class.html">Url</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel-module.html#Case">Case()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsageIndices-module.html">CodonUsageIndices</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.eLinkResult-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511.eLinkResult-class.html">eLinkResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Blunt-class.html#catalyse">catalyse()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Blunt-class.html">Blunt</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Enzyme._RecordConsumer-class.html#cofactor">cofactor()</a><br />
<span class="index-where">(in <a href="Bio.Enzyme._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.ERROR-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.ERROR-class.html">ERROR</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Ov3-class.html#catalyse">catalyse()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Ov3-class.html">Ov3</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#collapse">collapse()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.Id-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.Id-class.html">Id</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Ov5-class.html#catalyse">catalyse()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Ov5-class.html">Ov5</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#collectRules">collectRules()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.InvalidIdList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.InvalidIdList-class.html">InvalidIdList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Unknown-class.html#catalyse">catalyse()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Unknown-class.html">Unknown</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.delimiter-module.html#colonformat">colonformat</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.delimiter-module.html">Martel.test.testformats.delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.QueryKey-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.QueryKey-class.html">QueryKey</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Enzyme._RecordConsumer-class.html#catalytic_activity">catalytic_activity()</a><br />
<span class="index-where">(in <a href="Bio.Enzyme._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelConsumer-class.html#Cols">Cols()</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile.CelConsumer-class.html">CelConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.WebEnv-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.WebEnv-class.html">WebEnv</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter.CatchFields-class.html">CatchFields</a><br />
<span class="index-where">(in <a href="Martel.test.test_delimiter-module.html">Martel.test.test_delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.ColumnUnit-class.html">ColumnUnit</a><br />
<span class="index-where">(in <a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.ePostResult-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511.ePostResult-class.html">ePostResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#categories">categories</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#combine">combine()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Count-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Count-class.html">Count</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORIES">CATEGORIES</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.delimiter-module.html#commaformat">commaformat</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.delimiter-module.html">Martel.test.testformats.delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.ERROR-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.ERROR-class.html">ERROR</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_convert_re-module.html#categories">categories</a><br />
<span class="index-where">(in <a href="Martel.test.test_convert_re-module.html">Martel.test.test_convert_re</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#command_line">command_line()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.ErrorList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.ErrorList-class.html">ErrorList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.FieldNotFound-class.html#category">category</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.FieldNotFound-class.html">FieldNotFound</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Commandline-class.html">Commandline</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Explode-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Explode-class.html">Explode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.OutputMessage-class.html#category">category</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.OutputMessage-class.html">OutputMessage</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.Comment-class.html">Comment</a></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Field-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Field-class.html">Field</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.PhraseIgnored-class.html#category">category</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.PhraseIgnored-class.html">PhraseIgnored</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#comment">comment</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.FieldNotFound-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.FieldNotFound-class.html">FieldNotFound</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.PhraseNotFound-class.html#category">category</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.PhraseNotFound-class.html">PhraseNotFound</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#comment">comment</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.From-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.From-class.html">From</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.QuotedPhraseNotFound-class.html#category">category</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.QuotedPhraseNotFound-class.html">QuotedPhraseNotFound</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#comment">comment</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Id-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Id-class.html">Id</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY">CATEGORY</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.IdList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.IdList-class.html">IdList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY">CATEGORY</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Enzyme._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.Enzyme._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.OP-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.OP-class.html">OP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_DIGIT">CATEGORY_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.OutputMessage-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.OutputMessage-class.html">OutputMessage</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_DIGIT">CATEGORY_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.PhraseIgnored-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.PhraseIgnored-class.html">PhraseIgnored</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_LINEBREAK">CATEGORY_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.PhraseNotFound-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.PhraseNotFound-class.html">PhraseNotFound</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_LINEBREAK">CATEGORY_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NBRF._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.NBRF._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.QueryKey-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.QueryKey-class.html">QueryKey</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_LOC_NOT_WORD">CATEGORY_LOC_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.QueryTranslation-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.QueryTranslation-class.html">QueryTranslation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_LOC_NOT_WORD">CATEGORY_LOC_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.QuotedPhraseNotFound-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.QuotedPhraseNotFound-class.html">QuotedPhraseNotFound</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_LOC_WORD">CATEGORY_LOC_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.RetMax-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.RetMax-class.html">RetMax</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_LOC_WORD">CATEGORY_LOC_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#comment">comment()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.RetStart-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.RetStart-class.html">RetStart</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_NEWLINE">CATEGORY_NEWLINE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#comment_block">comment_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Term-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Term-class.html">Term</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_NEWLINE">CATEGORY_NEWLINE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#comment_line">comment_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TermSet-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.TermSet-class.html">TermSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_NOT_DIGIT">CATEGORY_NOT_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_line">comment_line</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics.intelligenetics_format-module.html">Bio.IntelliGenetics.intelligenetics_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.To-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.To-class.html">To</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_NOT_DIGIT">CATEGORY_NOT_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#comment_line">comment_line</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Translation-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.Translation-class.html">Translation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_NOT_LINEBREAK">CATEGORY_NOT_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#comment_line">comment_line</a><br />
<span class="index-where">(in <a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TranslationSet-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.TranslationSet-class.html">TranslationSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_NOT_LINEBREAK">CATEGORY_NOT_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_lines">comment_lines</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics.intelligenetics_format-module.html">Bio.IntelliGenetics.intelligenetics_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TranslationStack-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.TranslationStack-class.html">TranslationStack</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_NOT_SPACE">CATEGORY_NOT_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#comment_lines">comment_lines</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.WarningList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.WarningList-class.html">WarningList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_NOT_SPACE">CATEGORY_NOT_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#comments">comments</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.WebEnv-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.WebEnv-class.html">WebEnv</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_NOT_WORD">CATEGORY_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html#comments">comments()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html" onclick="show_private();">_Primer3RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.eSearchResult-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511.eSearchResult-class.html">eSearchResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_NOT_WORD">CATEGORY_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#comments">comments()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.DocSum-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSummary_020511.DocSum-class.html">DocSum</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_SPACE">CATEGORY_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Commercially_available-class.html">Commercially_available</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.ERROR-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSummary_020511.ERROR-class.html">ERROR</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_SPACE">CATEGORY_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#commit">commit()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.Id-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSummary_020511.Id-class.html">Id</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_DIGIT">CATEGORY_UNI_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#common_ancestor">common_ancestor()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.Item-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSummary_020511.Item-class.html">Item</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_DIGIT">CATEGORY_UNI_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction-module.html#CommOnly">CommOnly</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.eSummaryResult-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSummary_020511.eSummaryResult-class.html">eSummaryResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_LINEBREAK">CATEGORY_UNI_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics.Comparative-module.html">Comparative</a><br />
<span class="index-where">(in <a href="Bio.Graphics-module.html">Bio.Graphics</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ContentModel-class.html">ContentModel</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_LINEBREAK">CATEGORY_UNI_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics.Comparative.ComparativeScatterPlot-class.html">ComparativeScatterPlot</a><br />
<span class="index-where">(in <a href="Bio.Graphics.Comparative-module.html">Bio.Graphics.Comparative</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_NOT_DIGIT">CATEGORY_UNI_NOT_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#compare">compare()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.listfns-module.html#contents">contents()</a><br />
<span class="index-where">(in <a href="Bio.listfns-module.html">Bio.listfns</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_NOT_DIGIT">CATEGORY_UNI_NOT_DIGIT</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.MEMEMotif-class.html#compare_motifs">compare_motifs()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Motif.MEMEMotif-class.html">MEMEMotif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.Contig-class.html">Contig</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_NOT_LINEBREAK">CATEGORY_UNI_NOT_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.CompareAceStandalone-module.html#CompareAce">CompareAce()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.CompareAceStandalone-module.html">Bio.AlignAce.CompareAceStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#contig_block">contig_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_NOT_LINEBREAK">CATEGORY_UNI_NOT_LINEBREAK</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Applications.CompareAceCommandline-class.html">CompareAceCommandline</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Applications-module.html">Bio.AlignAce.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#contig_location">contig_location</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_NOT_SPACE">CATEGORY_UNI_NOT_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.CompareAceConsumer-class.html">CompareAceConsumer</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser-module.html">Bio.AlignAce.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#contig_location">contig_location()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_NOT_SPACE">CATEGORY_UNI_NOT_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.CompareAceParser-class.html">CompareAceParser</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser-module.html">Bio.AlignAce.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#contig_location">contig_location()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_NOT_WORD">CATEGORY_UNI_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Scanner.CompareAceScanner-class.html">CompareAceScanner</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Scanner-module.html">Bio.AlignAce.Scanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#continuation_line">continuation_line</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_NOT_WORD">CATEGORY_UNI_NOT_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.CompareAceStandalone-module.html">CompareAceStandalone</a><br />
<span class="index-where">(in <a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Controller-module.html">Controller</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist-module.html">Bio.PopGen.FDist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_SPACE">CATEGORY_UNI_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Compass-module.html">Compass</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Controller-module.html">Controller</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_SPACE">CATEGORY_UNI_SPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Blunt-class.html#compatible_end">compatible_end()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Blunt-class.html">Blunt</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#converged">converged()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html" onclick="show_private();">_DescriptionConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_UNI_WORD">CATEGORY_UNI_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Ov3-class.html#compatible_end">compatible_end()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Ov3-class.html">Ov3</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.Simple.ConversionMutation-class.html">ConversionMutation</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.Simple-module.html">Bio.GA.Mutation.Simple</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_UNI_WORD">CATEGORY_UNI_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Ov5-class.html#compatible_end">compatible_end()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Ov5-class.html">Ov5</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#convert_absolute_support">convert_absolute_support()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CATEGORY_WORD">CATEGORY_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Unknown-class.html#compatible_end">compatible_end()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Unknown-class.html">Unknown</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_any">convert_any()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CATEGORY_WORD">CATEGORY_WORD</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#compile">compile()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_assert">convert_assert()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#CC">CC</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.dtd2py-module.html#compile_file">compile_file()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.dtd2py-module.html">Bio.EUtils.dtd2py</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_assert_not">convert_assert_not()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#CC">CC</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#complement">complement()</a><br />
<span class="index-where">(in <a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_at">convert_at()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#CC">CC</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.Seq-class.html#complement">complement()</a><br />
<span class="index-where">(in <a href="Bio.Seq.Seq-class.html">Seq</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_branch">convert_branch()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#CC_begin">CC_begin</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#complement_alphabet">complement_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Utils-module.html#convert_genepop_to_fdist">convert_genepop_to_fdist()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist.Utils-module.html">Bio.PopGen.FDist.Utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#CC_begin">CC_begin</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_groupref">convert_groupref()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#CC_begin">CC_begin</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_in">convert_in()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#CC_block">CC_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_list">convert_list()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright">CC_copyright</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_literal">convert_literal()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#CC_copyright">CC_copyright</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_max_repeat">convert_max_repeat()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#CC_copyright">CC_copyright</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_newline">convert_newline()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright_begin">CC_copyright_begin</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_not_literal">convert_not_literal()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#CC_copyright_begin">CC_copyright_begin</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#Complex0">Complex0</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html">convert_re</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#CC_copyright_begin">CC_copyright_begin</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence-module.html#convert_std_feature">convert_std_feature()</a><br />
<span class="index-where">(in <a href="Bio.builders.SeqRecord.sequence-module.html">Bio.builders.SeqRecord.sequence</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright_end">CC_copyright_end</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#convert_subpattern">convert_subpattern()</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#CC_copyright_end">CC_copyright_end</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_Date">convert_summary_Date()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#CC_copyright_end">CC_copyright_end</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_Date_string">convert_summary_Date_string()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#CC_line">CC_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_Integer">convert_summary_Integer()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cd_block">cd_block</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_Items">convert_summary_Items()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cd_contents_line">cd_contents_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_List">convert_summary_List()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cd_contents_multiline">cd_contents_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#Complex16">Complex16</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_String">convert_summary_String()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cd_key_line">cd_key_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#convert_summary_Unknown">convert_summary_Unknown()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cd_tag">cd_tag</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.ConvertDispatchHandler-class.html">ConvertDispatchHandler</a><br />
<span class="index-where">(in <a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.CDATA-class.html">CDATA</a></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.convert_re-module.html#converter_table">converter_table</a><br />
<span class="index-where">(in <a href="Martel.convert_re-module.html">Martel.convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD-module.html">CDD</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_convert_re-module.html#converter_table">converter_table</a><br />
<span class="index-where">(in <a href="Martel.test.test_convert_re-module.html">Martel.test.test_convert_re</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html">cdd_format</a><br />
<span class="index-where">(in <a href="Bio.CDD-module.html">Bio.CDD</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.ConvertHandler-class.html">ConvertHandler</a><br />
<span class="index-where">(in <a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#cdd_record">cdd_record</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#convex_basis_block">convex_basis_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#convex_basis_line">convex_basis_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#Complex32">Complex32</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#convex_basis_tag">convex_basis_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#convex_basis_tag">convex_basis_tag()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Organism.Organism-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.GA.Organism.Organism-class.html">Organism</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27.Vector-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27.Vector-class.html">Vector</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#ceil">ceil</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.ExPASyDictionary-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelConsumer-class.html">CelConsumer</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeTerm-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeTerm-class.html">PrositeTerm</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html">CelFile</a><br />
<span class="index-where">(in <a href="Bio.Affy-module.html">Bio.Affy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#Complex64">Complex64</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelParser-class.html">CelParser</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PubMed.Dictionary-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.PubMed.Dictionary-class.html">Dictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelRecord-class.html">CelRecord</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelScanner-class.html">CelScanner</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Any-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Any-class.html">Any</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.CGIDB-class.html">CGIDB</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry-module.html">Bio.config.DBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AnyEol-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.AnyEol-class.html">AnyEol</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CH_LOCALE">CH_LOCALE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Assert-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Assert-class.html">Assert</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CH_LOCALE">CH_LOCALE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AtBeginning-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.AtBeginning-class.html">AtBeginning</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CH_UNICODE">CH_UNICODE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AtEnd-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.AtEnd-class.html">AtEnd</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CH_UNICODE">CH_UNICODE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#Complex8">Complex8</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Debug-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Debug-class.html">Debug</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal.Chain-class.html">Chain</a><br />
<span class="index-where">(in <a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KEGG.Compound-module.html">Compound</a><br />
<span class="index-where">(in <a href="Bio.KEGG-module.html">Bio.KEGG</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Dot-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Dot-class.html">Dot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes-module.html">Bio.Nexus.Nodes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.compression-module.html">compression</a><br />
<span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Expression-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Expression-class.html">Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Chain-module.html">Chain</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#compute_accum_weight">compute_accum_weight()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.ExpressionList-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ExpressionList-class.html">ExpressionList</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Chain.Chain-class.html">Chain</a><br />
<span class="index-where">(in <a href="Bio.PDB.Chain-module.html">Bio.PDB.Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Config-module.html">Config</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.FastFeature-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.FastFeature-class.html">FastFeature</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#chain_id">chain_id</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config-module.html">config</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Group-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Group-class.html">Group</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.ChainException-class.html">ChainException</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes-module.html">Bio.Nexus.Nodes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.GroupRef-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.GroupRef-class.html">GroupRef</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Dice.ChainSelector-class.html">ChainSelector</a><br />
<span class="index-where">(in <a href="Bio.PDB.Dice-module.html">Bio.PDB.Dice</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.HeaderFooter-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.HeaderFooter-class.html">HeaderFooter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#change">change()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Literal-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Literal-class.html">Literal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.NoCut-class.html#characteristic">characteristic()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.NoCut-class.html">NoCut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.MaxRepeat-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.MaxRepeat-class.html">MaxRepeat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.OneCut-class.html#characteristic">characteristic()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.OneCut-class.html">OneCut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.NullOp-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.NullOp-class.html">NullOp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.TwoCuts-class.html#characteristic">characteristic()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.TwoCuts-class.html">TwoCuts</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.ParseRecords-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.ParseRecords-class.html">ParseRecords</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIXML._XMLparser-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIXML._XMLparser-class.html" onclick="show_private();">_XMLparser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.PassThrough-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.PassThrough-class.html">PassThrough</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#conjugate">conjugate</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Str-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Expression.Str-class.html">Str</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Entrez.Parser.DataHandler-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Bio.Entrez.Parser.DataHandler-class.html">DataHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL-module.html#connection">connection</a><br />
<span class="index-where">(in <a href="Bio.DocSQL-module.html">Bio.DocSQL</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.IterParser.IterHeaderFooter-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.IterParser.IterHeaderFooter-class.html">IterHeaderFooter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.Connection-class.html">Connection</a><br />
<span class="index-where">(in <a href="Bio.GFF-module.html">Bio.GFF</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.IterParser.IterRecords-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.IterParser.IterRecords-class.html">IterRecords</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.EventGenerator-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport.EventGenerator-class.html">EventGenerator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.Update.ConnectionError-class.html">ConnectionError</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.Update-module.html">Bio.Restriction._Update.Update</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Iterator.IteratorRecords-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Iterator.IteratorRecords-class.html">IteratorRecords</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees-module.html#consensus">consensus()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees-module.html">Bio.Nexus.Trees</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.HeaderFooterParser-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Parser.HeaderFooterParser-class.html">HeaderFooterParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.LAX.LAX-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Martel.LAX.LAX-class.html">LAX</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#conservation_relations_block">conservation_relations_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Parser.Parser-class.html">Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.support.Dump-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Martel.test.support.Dump-class.html">Dump</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#conservation_relations_line">conservation_relations_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.RecordParser-class.html#copy">copy()</a><br />
<span class="index-where">(in <a href="Martel.Parser.RecordParser-class.html">RecordParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter.CatchFields-class.html#characters">characters()</a><br />
<span class="index-where">(in <a href="Martel.test.test_delimiter.CatchFields-class.html">CatchFields</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#conservation_relations_tag">conservation_relations_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#copyright">copyright</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.CharBuffer-class.html">CharBuffer</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#conservation_relations_tag">conservation_relations_tag()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.speclist-module.html#COPYRIGHT">COPYRIGHT</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.speclist-module.html">Bio.expressions.swissprot.speclist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.IsoelectricPoint-module.html#charged_aas">charged_aas</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.IsoelectricPoint-module.html">Bio.SeqUtils.IsoelectricPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#ConsoleWidth">ConsoleWidth</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#copyright">copyright</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#CHARSET">CHARSET</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.RanaConfig-module.html#ConsoleWidth">ConsoleWidth</a><br />
<span class="index-where">(in <a href="Bio.Restriction.RanaConfig-module.html">Bio.Restriction.RanaConfig</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CHARSET">CHARSET</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#consrtm">consrtm()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CHARSET">CHARSET</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#consrtm">consrtm()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#CHCODES">CHCODES</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#consrtm_block">consrtm_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#CHCODES">CHCODES</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#constant">constant()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#check_assert">check_assert()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Alphabet-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Alphabet-class.html">Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#check_assert_not">check_assert_not()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.AlphabetEncoder-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.AlphabetEncoder-class.html">AlphabetEncoder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#check_at_beginning">check_at_beginning()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Gapped-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Gapped-class.html">Gapped</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#check_dicts">check_dicts()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.HasStopCodon-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.HasStopCodon-class.html">HasStopCodon</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#cos">cos</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#check_element">check_element()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.HashSet.HashSet-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.HashSet.HashSet-class.html">HashSet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#check_error_pos">check_error_pos()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html#contains">contains()</a><br />
<span class="index-where">(in <a href="Bio.biblio.Biblio-class.html">Biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.setup-module.html#check_install">check_install()</a><br />
<span class="index-where">(in <a href="Martel.setup-module.html">Martel.setup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Attribute-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Attribute-class.html">Attribute</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.setup-module.html#check_mxTextTools">check_mxTextTools()</a><br />
<span class="index-where">(in <a href="Martel.setup-module.html">Martel.setup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Base-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Base-class.html">Base</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.biblio-module.html#checkargv">checkargv()</a><br />
<span class="index-where">(in <a href="Bio.biblio-module.html">Bio.biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Brief-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Brief-class.html">Brief</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.CheckAssert-class.html">CheckAssert</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Database-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Database-class.html">Database</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.CheckAssertNot-class.html">CheckAssertNot</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ExclQuery-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ExclQuery-class.html">ExclQuery</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.support.CheckGood-class.html">CheckGood</a><br />
<span class="index-where">(in <a href="Martel.test.support-module.html">Martel.test.support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.IconUrl-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.IconUrl-class.html">IconUrl</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#cosh">cosh</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.convert_re.GroupNames-class.html#checkgroup">checkgroup()</a><br />
<span class="index-where">(in <a href="Martel.convert_re.GroupNames-class.html">GroupNames</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.InclQuery-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.InclQuery-class.html">InclQuery</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Count-class.html">Count</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Pattern-class.html#checkgroup">checkgroup()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Pattern-class.html">Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Link-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Link-class.html">Link</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Count-class.html">Count</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.CheckGroupRef-class.html">CheckGroupRef</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.LinkId-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.LinkId-class.html">LinkId</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.FreqTable-module.html#COUNT">COUNT</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.FreqTable-module.html">Bio.SubsMat.FreqTable</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.CheckLinkSet-class.html">CheckLinkSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.LinkSet-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.LinkSet-class.html">LinkSet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Chain-class.html#count">count()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Chain-class.html">Chain</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CheckSum-module.html">CheckSum</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Name-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Name-class.html">Name</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#count">count()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#chem">chem()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.NameAbbr-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.NameAbbr-class.html">NameAbbr</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#count">count()</a><br />
<span class="index-where">(in <a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#child_edges">child_edges()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ObjId-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ObjId-class.html">ObjId</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.Seq-class.html#count">count()</a><br />
<span class="index-where">(in <a href="Bio.Seq.Seq-class.html">Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#child_edges">child_edges()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ObjectList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ObjectList-class.html">ObjectList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.listfns-module.html#count">count()</a><br />
<span class="index-where">(in <a href="Bio.listfns-module.html">Bio.listfns</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#children">children()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ObjectSelector-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ObjectSelector-class.html">ObjectSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#count_amino_acids">count_amino_acids()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#children">children()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ObjectUrl-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ObjectUrl-class.html">ObjectUrl</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#count_monomers">count_monomers()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#chomp">chomp()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Provider-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Provider-class.html">Provider</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#count_records">count_records()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#chompchomp">chompchomp()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ProviderId-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.ProviderId-class.html">ProviderId</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser.CountErrors-class.html">CountErrors</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#chromat_file">chromat_file()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Query-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Query-class.html">Query</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.RecordReader.CountLines-class.html">CountLines</a><br />
<span class="index-where">(in <a href="Martel.RecordReader-module.html">Martel.RecordReader</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome.Chromosome-class.html">Chromosome</a><br />
<span class="index-where">(in <a href="Bio.Graphics.BasicChromosome-module.html">Bio.Graphics.BasicChromosome</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Rule-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Rule-class.html">Rule</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser.CountRecords-class.html">CountRecords</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#CHROMOSOME">CHROMOSOME()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.RuleToMany-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.RuleToMany-class.html">RuleToMany</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#country">country()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a><br />
<span class="index-where">(in <a href="Bio.Graphics.DisplayRepresentation-module.html">Bio.Graphics.DisplayRepresentation</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Separator-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Separator-class.html">Separator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CheckSum-module.html#crc32">crc32()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CheckSum-module.html">Bio.SeqUtils.CheckSum</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html">ChromosomeSegment</a><br />
<span class="index-where">(in <a href="Bio.Graphics.BasicChromosome-module.html">Bio.Graphics.BasicChromosome</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubObjectSelector-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.SubObjectSelector-class.html">SubObjectSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CheckSum-module.html#crc64">crc64()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CheckSum-module.html">Bio.SeqUtils.CheckSum</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.FormattedSeq-class.html#circularise">circularise()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.FormattedSeq-class.html">FormattedSeq</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubProvider-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.SubProvider-class.html">SubProvider</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Create-class.html">Create</a><br />
<span class="index-where">(in <a href="Bio.DocSQL-module.html">Bio.DocSQL</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree-module.html">CKDTree</a><br />
<span class="index-where">(in <a href="Bio.KDTree-module.html">Bio.KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubjectType-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.SubjectType-class.html">SubjectType</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB-module.html#create">create()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB-module.html">Bio.Mindy.BerkeleyDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd-module.html#CKEYWORDS">CKEYWORDS</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd-module.html">Bio.Sequencing.Phd</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Url-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.Url-class.html">Url</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB-module.html#create">create()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Cla-module.html">Cla</a><br />
<span class="index-where">(in <a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.UrlName-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.UrlName-class.html">UrlName</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord-module.html#create_berkeleydb">create_berkeleydb()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord-module.html">Bio.Mindy.SimpleSeqRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#class_update_date">class_update_date()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.apad-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.apad-class.html">apad</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord-module.html#create_flatdb">create_flatdb()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord-module.html">Bio.Mindy.SimpleSeqRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#classdict">classdict</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.normalize-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.normalize-class.html">normalize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#create_lymphocyte">create_lymphocyte()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.ClassHolder-class.html">ClassHolder</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.pad-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.pad-class.html">pad</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PropertyManager.CreateDict-class.html">CreateDict</a><br />
<span class="index-where">(in <a href="Bio.PropertyManager-module.html">Bio.PropertyManager</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#classify">classify()</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.strip-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.strip-class.html">strip</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#crop_matrix">crop_matrix()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#classify">classify()</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.subs-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.subs-class.html">subs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover-module.html">Crossover</a><br />
<span class="index-where">(in <a href="Bio.GA-module.html">Bio.GA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#classify">classify()</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.tolower-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.tolower-class.html">tolower</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal-module.html">Crystal</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#classify">classify()</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.toupper-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut.toupper-class.html">toupper</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html">Crystal</a><br />
<span class="index-where">(in <a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean">clean()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">AlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Count-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Count-class.html">Count</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.CrystalError-class.html">CrystalError</a><br />
<span class="index-where">(in <a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean">clean()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html">SequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.DbInfo-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.DbInfo-class.html">DbInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#cstatus">cstatus()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.utils.FeatureValueCleaner-class.html#clean_value">clean_value()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.utils.FeatureValueCleaner-class.html">FeatureValueCleaner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.DbList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.DbList-class.html">DbList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.ct-class.html">ct</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.DbName-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.DbName-class.html">DbName</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#ct_data">ct_data()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.DbTo-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.DbTo-class.html">DbTo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#ct_start">ct_start()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Index._InMemoryIndex-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.Index._InMemoryIndex-class.html">_InMemoryIndex</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Descriptor-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Descriptor-class.html">Descriptor</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#current_suppliers">current_suppliers()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.ExPASyDictionary-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.ERROR-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.ERROR-class.html">ERROR</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#cursor">cursor()</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Field-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Field-class.html">Field</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.QuerySingle-class.html#cursor">cursor()</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.QuerySingle-class.html">QuerySingle</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PubMed.Dictionary-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.PubMed.Dictionary-class.html">Dictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.FiledList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.FiledList-class.html">FiledList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.NoCut-class.html#cut_once">cut_once()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.NoCut-class.html">NoCut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html#clear">clear()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Hierarchy-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Hierarchy-class.html">Hierarchy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.OneCut-class.html#cut_once">cut_once()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.OneCut-class.html">OneCut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FilteredReader.FilteredReader-class.html#close">close()</a><br />
<span class="index-where">(in <a href="Bio.FilteredReader.FilteredReader-class.html">FilteredReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.IsDate-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.IsDate-class.html">IsDate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.TwoCuts-class.html#cut_once">cut_once()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.TwoCuts-class.html">TwoCuts</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html#close">close()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html">BerkeleyDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.IsNumerical-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.IsNumerical-class.html">IsNumerical</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.NoCut-class.html#cut_twice">cut_twice()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.NoCut-class.html">NoCut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html#close">close()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html">MemoryFlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.Link-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.Link-class.html">Link</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.OneCut-class.html#cut_twice">cut_twice()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.OneCut-class.html">OneCut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#close">close()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.LinkList-class.html#CONTENTMODEL">CONTENTMODEL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511.LinkList-class.html">LinkList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.TwoCuts-class.html#cut_twice">cut_twice()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.TwoCuts-class.html">TwoCuts</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html#close">close()</a><br />
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