<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Identifier Index</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%"> </td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="identifier-index-B.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="B">B</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.CodonTable-class.html#back_table">back_table</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.CodonTable-class.html">CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastx">blastx</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Seq-module.html#back_transcribe">back_transcribe()</a><br />
<span class="index-where">(in <a href="Bio.Seq-module.html">Bio.Seq</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx">blastx</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Transcribe.Transcribe-class.html#back_transcribe">back_transcribe()</a><br />
<span class="index-where">(in <a href="Bio.Transcribe.Transcribe-class.html">Transcribe</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#blastx">blastx</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#back_transcribe">back_transcribe()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastx_appheader">blastx_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Translate.Translator-class.html#back_translate">back_translate()</a><br />
<span class="index-where">(in <a href="Bio.Translate.Translator-class.html">Translator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_appheader">blastx_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#back_translate">back_translate()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastx_ending">blastx_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html#backpropagate">backpropagate()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html">HiddenLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_ending">blastx_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html#backpropagate">backpropagate()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html">InputLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastx_hsp_header">blastx_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#backpropagate">backpropagate()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html">OutputLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_hsp_header">blastx_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation-module.html">BackPropagation</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork-module.html">Bio.NeuralNetwork</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_identities">blastx_identities</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#backward_algorithm">backward_algorithm()</a><br />
<span class="index-where">(in <a href="Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html">AbstractDPAlgorithms</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#bitwise_or">bitwise_or</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_score">blastx_score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.BadMatrix-class.html">BadMatrix</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_strand">blastx_strand</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#BadMatrixError">BadMatrixError</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_table_entry">blastx_table_entry</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html#BANGLINE">BANGLINE</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastx_to_database">blastx_to_database</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.Distribution.BarChartDistribution-class.html">BarChartDistribution</a><br />
<span class="index-where">(in <a href="Bio.Graphics.Distribution-module.html">Bio.Graphics.Distribution</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Block-class.html">Block</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Base-class.html">Base</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#block_type">block_type</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#base_count">base_count</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blocks-module.html">blocks</a><br />
<span class="index-where">(in <a href="Bio.expressions-module.html">Bio.expressions</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#base_count">base_count()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum100">blosum100</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#base_count">base_count()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#bitwise_xor">bitwise_xor</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum30">blosum30</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#base_count_line">base_count_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blocks-module.html#BL">BL</a><br />
<span class="index-where">(in <a href="Bio.expressions.blocks-module.html">Bio.expressions.blocks</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum35">blosum35</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#BASE_FEATURE_FORMAT">BASE_FEATURE_FORMAT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#blank">blank</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum40">blosum40</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#BASE_FORMAT">BASE_FORMAT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs._support-module.html#blank_expr">blank_expr</a><br />
<span class="index-where">(in <a href="Bio.dbdefs._support-module.html">Bio.dbdefs._support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum45">blosum45</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#base_number">base_number</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#blank_line">blank_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum50">blosum50</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#base_number">base_number()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#blank_line">blank_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum55">blosum55</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeTerm-class.html#base_str">base_str()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeTerm-class.html">PrositeTerm</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#blank_line">blank_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum60">blosum60</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB-module.html">BaseDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#blank_line">blank_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum62">blosum62</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.BaseDBIdsRecordSet-class.html">BaseDBIdsRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#blank_space">blank_space</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum65">blosum65</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#BaseExpand">BaseExpand()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#blank_space">blank_space</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum70">blosum70</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.BaseFlatDB-class.html">BaseFlatDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#blank_spaces">blank_spaces</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum75">blosum75</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.BaseHistoryRecordSet-class.html">BaseHistoryRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast-module.html">Blast</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum80">blosum80</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html">BaseSeqRecordIndexer</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord-module.html">Bio.Mindy.SimpleSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.Blast-class.html">Blast</a><br />
<span class="index-where">(in <a href="Bio.Blast.Record-module.html">Bio.Blast.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum85">blosum85</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome-module.html">BasicChromosome</a><br />
<span class="index-where">(in <a href="Bio.Graphics-module.html">Bio.Graphics</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast-module.html">blast</a><br />
<span class="index-where">(in <a href="Bio.expressions-module.html">Bio.expressions</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum90">blosum90</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html">BasicNetwork</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Network-module.html">Bio.NeuralNetwork.BackPropagation.Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#blast">blast</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#blosum95">blosum95</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.BaumWelchTrainer-class.html">BaumWelchTrainer</a><br />
<span class="index-where">(in <a href="Bio.HMM.Trainer-module.html">Bio.HMM.Trainer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#blast_cutoff">blast_cutoff()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Blunt-class.html">Blunt</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.BeforePosition-class.html">BeforePosition</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blast_filter">blast_filter</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#blunt">blunt()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#begin_contig">begin_contig()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone-module.html#blastall">blastall()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#bogus_DR_group">bogus_DR_group</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#begin_record_line">begin_record_line</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Applications.BlastallCommandline-class.html">BlastallCommandline</a><br />
<span class="index-where">(in <a href="Bio.Blast.Applications-module.html">Bio.Blast.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#bogus_DR_group">bogus_DR_group</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#begin_sequence">begin_sequence()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.BlastErrorParser-class.html">BlastErrorParser</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#bogus_DR_group">bogus_DR_group</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#benner22">benner22</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastn">blastn</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#boiler_plate">boiler_plate</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#benner6">benner6</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn">blastn</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Bol">Bol()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#benner74">benner74</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#blastn">blastn</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#bootstrap">bootstrap()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB-module.html">BerkeleyDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastn_appheader">blastn_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#bounding">bounding()</a><br />
<span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html">BerkeleyDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB-module.html">Bio.Mindy.BerkeleyDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_appheader">blastn_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#bq_data">bq_data()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Between-class.html">Between</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastn_ending">blastn_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#bq_header">bq_header()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#between">between()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_ending">blastn_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#BRANCH">BRANCH</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.BetweenPosition-class.html">BetweenPosition</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastn_hsp_header">blastn_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#BRANCH">BRANCH</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph-module.html#bf_search">bf_search()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph-module.html">Bio.Pathway.Rep.MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_hsp_header">blastn_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#branch_metabolite">branch_metabolite</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot40-module.html#bib">bib</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot40-module.html">Bio.expressions.swissprot.sprot40</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastn_identical">blastn_identical</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#branch_metabolite">branch_metabolite()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.biblio-module.html">biblio</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_identities">blastn_identities</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#branch_metabolite_block">branch_metabolite_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.biblio.Biblio-class.html">Biblio</a><br />
<span class="index-where">(in <a href="Bio.biblio-module.html">Bio.biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_score">blastn_score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#branchlength2support">branchlength2support()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a><br />
<span class="index-where">(in <a href="Bio.biblio-module.html">Bio.biblio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastn_strand">blastn_strand</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Brief-class.html">Brief</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#big_gap">big_gap</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastp">blastp</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.bs-class.html">bs</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#big_indent_space">big_indent_space</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastp">blastp</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#bs">bs()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.BinaryOp-class.html">BinaryOp</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#blastp">blastp</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Commercially_available-class.html#buffers">buffers()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Commercially_available-class.html">Commercially_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.binning-module.html">binning</a><br />
<span class="index-where">(in <a href="Bio.GFF-module.html">Bio.GFF</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastp_appheader">blastp_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Not_available-class.html#buffers">buffers()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Not_available-class.html">Not_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio-module.html">Bio</a></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastp_appheader">blastp_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#build_align">build_align()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.BioCorbaDB-class.html">BioCorbaDB</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry-module.html">Bio.config.DBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastp_ending">blastp_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#build_dict">build_dict()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html">DictionaryBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.DBXRef.BioformatDBName-class.html">BioformatDBName</a><br />
<span class="index-where">(in <a href="Bio.DBXRef-module.html">Bio.DBXRef</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastp_ending">blastp_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide._PPBuilder-class.html#build_peptides">build_peptides()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide._PPBuilder-class.html" onclick="show_private();">_PPBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeq-module.html">BioSeq</a><br />
<span class="index-where">(in <a href="BioSQL-module.html">BioSQL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastp_hsp_header">blastp_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignDict-class.html#build_resnum_list">build_resnum_list()</a><br />
<span class="index-where">(in <a href="Bio.FSSP.FSSPAlignDict-class.html">FSSPAlignDict</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase-module.html">BioSeqDatabase</a><br />
<span class="index-where">(in <a href="BioSQL-module.html">BioSQL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastp_hsp_header">blastp_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTBuilder-class.html#buildASTNode">buildASTNode()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTBuilder-class.html">GenericASTBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeqDatabase-module.html">BioSQL.BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#blastp_identical">blastp_identical</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders-module.html">builders</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL-module.html">BioSQL</a></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#blastp_score">blastp_score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search-module.html">Bio.builders.Search.search</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.BioSQLDB-class.html">BioSQLDB</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry-module.html">Bio.config.DBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.BlastParser-class.html">BlastParser</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a><br />
<span class="index-where">(in <a href="Bio.builders.SeqRecord.sequence-module.html">Bio.builders.SeqRecord.sequence</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.BisectFile-class.html">BisectFile</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIWWW.BlastParser-class.html">BlastParser</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIWWW-module.html">Bio.Blast.NCBIWWW</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#buildState">buildState()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIXML.BlastParser-class.html">BlastParser</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIXML-module.html">Bio.Blast.NCBIXML</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#buildTree">buildTree()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone-module.html#blastpgp">blastpgp()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#buildTree_r">buildTree_r()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.ParseBlastTable.BlastTableEntry-class.html">BlastTableEntry</a><br />
<span class="index-where">(in <a href="Bio.Blast.ParseBlastTable-module.html">Bio.Blast.ParseBlastTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.TypeCompiler-class.html#buildtype">buildtype()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.TypeCompiler-class.html">TypeCompiler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.ParseBlastTable.BlastTableReader-class.html">BlastTableReader</a><br />
<span class="index-where">(in <a href="Bio.Blast.ParseBlastTable-module.html">Bio.Blast.ParseBlastTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal-module.html#builtin_tpl_dir">builtin_tpl_dir</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#bitwise_and">bitwise_and</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.ParseBlastTable.BlastTableRec-class.html">BlastTableRec</a><br />
<span class="index-where">(in <a href="Bio.Blast.ParseBlastTable-module.html">Bio.Blast.ParseBlastTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HotRand-module.html#byte_concat">byte_concat()</a><br />
<span class="index-where">(in <a href="Bio.HotRand-module.html">Bio.HotRand</a>)</span></td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:17 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
