Sophie

Sophie

distrib > Mandriva > 2008.1 > x86_64 > by-pkgid > 763d6289e1351f2d34257ce697a3ccb7 > files > 1909

biopython-doc-1.47-2mdv2008.1.x86_64.rpm

<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>Martel.test.testformats.swissprot38</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
  <tr valign="top">
    <td width="100%">
      <span class="breadcrumbs">
        <a href="Martel-module.html">Package&nbsp;Martel</a> ::
        <a href="Martel.test-module.html">Package&nbsp;test</a> ::
        <a href="Martel.test.testformats-module.html">Package&nbsp;testformats</a> ::
        Module&nbsp;swissprot38
      </span>
    </td>
    <td>
      <table cellpadding="0" cellspacing="0">
        <!-- hide/show private -->
        <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span></td></tr>
        <tr><td align="right"><span class="options"
            >[<a href="frames.html" target="_top">frames</a
            >]&nbsp;|&nbsp;<a href="Martel.test.testformats.swissprot38-module.html"
            target="_top">no&nbsp;frames</a>]</span></td></tr>
      </table>
    </td>
  </tr>
</table>
<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module swissprot38</h1><p class="nomargin-top"><span class="codelink"><a href="Martel.test.testformats.swissprot38-pysrc.html">source&nbsp;code</a></span></p>
<p>Parser for the SWISS-PROT 38 format.</p>
  <p>You probably want to use the variables 'record' (for a single record) 
  and 'format' (for a set of records).</p>

<!-- ==================== FUNCTIONS ==================== -->
<a name="section-Functions"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Functions</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-Functions"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
      </tr>
    </table>
  </td>
</tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="Simple"></a><span class="summary-sig-name">Simple</span>(<span class="summary-sig-arg">tag</span>,
        <span class="summary-sig-arg">tag_data</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Martel.test.testformats.swissprot38-pysrc.html#Simple">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
</table>
<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Variables</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-Variables"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
      </tr>
    </table>
  </td>
</tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#ID" class="summary-name">ID</a> = <code title="Martel.Group(&quot;ID&quot;, Martel.Re(r&quot;ID   (?P&lt;entry_name&gt;\w+) +(?P&lt;data_clas\
s_table&gt;\w+); +&quot; r&quot;(?P&lt;molecule_type&gt;\w+); +(?P&lt;sequence_length&gt;\d+) A\
A\.\R&quot;))">Martel.Group(&quot;ID&quot;, Martel.Re(r&quot;ID   (?P&lt;entry_name&gt;\w+) +<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#AC" class="summary-name">AC</a> = <code title="Martel.Group(&quot;AC&quot;, Martel.Re(r&quot;AC   (?P&lt;ac_number&gt;\w+);( (?P&lt;ac_number\
&gt;\w+);)*\R&quot;))">Martel.Group(&quot;AC&quot;, Martel.Re(r&quot;AC   (?P&lt;ac_number&gt;\w+);( <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="AC_block"></a><span class="summary-name">AC_block</span> = <code title="Martel.Group(&quot;AC_block&quot;, Martel.Rep1(AC))">Martel.Group(&quot;AC_block&quot;, Martel.Rep1(AC))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DT_created" class="summary-name">DT_created</a> = <code title="Martel.Group(&quot;DT_created&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month&gt;..\
.)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Created\)\R&quot;))">Martel.Group(&quot;DT_created&quot;, Martel.Re(r&quot;DT   (?P&lt;d<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DT_seq_update" class="summary-name">DT_seq_update</a> = <code title="Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month\
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last sequence upda\
te\)\R&quot;))">Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT  <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DT_ann_update" class="summary-name">DT_ann_update</a> = <code title="Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month\
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last annotation up\
date\)\R&quot;))">Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT  <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="DE"></a><span class="summary-name">DE</span> = <code title="Simple(&quot;DE&quot;, &quot;description&quot;)">Simple(&quot;DE&quot;, &quot;description&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="DE_block"></a><span class="summary-name">DE_block</span> = <code title="Martel.Group(&quot;DE_block&quot;, Martel.Rep1(DE))">Martel.Group(&quot;DE_block&quot;, Martel.Rep1(DE))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="GN"></a><span class="summary-name">GN</span> = <code title="Simple(&quot;GN&quot;, &quot;gene_names&quot;)">Simple(&quot;GN&quot;, &quot;gene_names&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="GN_block"></a><span class="summary-name">GN_block</span> = <code title="Martel.Group(&quot;GN_block&quot;, Martel.Rep1(GN))">Martel.Group(&quot;GN_block&quot;, Martel.Rep1(GN))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OS"></a><span class="summary-name">OS</span> = <code title="Simple(&quot;OS&quot;, &quot;organism_species&quot;)">Simple(&quot;OS&quot;, &quot;organism_species&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OS_block"></a><span class="summary-name">OS_block</span> = <code title="Martel.Group(&quot;OS_block&quot;, Martel.Rep1(OS))">Martel.Group(&quot;OS_block&quot;, Martel.Rep1(OS))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OG"></a><span class="summary-name">OG</span> = <code title="Simple(&quot;OG&quot;, &quot;organelle&quot;)">Simple(&quot;OG&quot;, &quot;organelle&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OG_block"></a><span class="summary-name">OG_block</span> = <code title="Martel.Group(&quot;OG_block&quot;, Martel.Rep1(OG))">Martel.Group(&quot;OG_block&quot;, Martel.Rep1(OG))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OC"></a><span class="summary-name">OC</span> = <code title="Simple(&quot;OC&quot;, &quot;organism_classification&quot;)">Simple(&quot;OC&quot;, &quot;organism_classification&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OC_block"></a><span class="summary-name">OC_block</span> = <code title="Martel.Group(&quot;OC_block&quot;, Martel.Rep1(OC))">Martel.Group(&quot;OC_block&quot;, Martel.Rep1(OC))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#RN" class="summary-name">RN</a> = <code title="Martel.Group(&quot;RN&quot;, Martel.Re(&quot;RN   \[(?P&lt;reference_number&gt;\d+)]\R&quot;))">Martel.Group(&quot;RN&quot;, Martel.Re(&quot;RN   \[(?P&lt;reference_number<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RP"></a><span class="summary-name">RP</span> = <code title="Simple(&quot;RP&quot;, &quot;reference_position&quot;)">Simple(&quot;RP&quot;, &quot;reference_position&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RC"></a><span class="summary-name">RC</span> = <code title="Simple(&quot;RC&quot;, &quot;reference_comment&quot;)">Simple(&quot;RC&quot;, &quot;reference_comment&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RC_block"></a><span class="summary-name">RC_block</span> = <code title="Martel.Group(&quot;RC_block&quot;, Martel.Rep1(RC))">Martel.Group(&quot;RC_block&quot;, Martel.Rep1(RC))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#RX" class="summary-name">RX</a> = <code title="Martel.Group(&quot;RX&quot;, Martel.Re(&quot;RX   (?P&lt;bibliographic_database_name&gt;\w+\
); &quot; &quot;(?P&lt;bibliographic_identifier&gt;\d+)\.\R&quot;))">Martel.Group(&quot;RX&quot;, Martel.Re(&quot;RX   (?P&lt;bibliographic_data<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RA"></a><span class="summary-name">RA</span> = <code title="Simple(&quot;RA&quot;, &quot;reference_author&quot;)">Simple(&quot;RA&quot;, &quot;reference_author&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RA_block"></a><span class="summary-name">RA_block</span> = <code title="Martel.Group(&quot;RA_block&quot;, Martel.Rep1(RA))">Martel.Group(&quot;RA_block&quot;, Martel.Rep1(RA))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RT"></a><span class="summary-name">RT</span> = <code title="Simple(&quot;RT&quot;, &quot;reference_title&quot;)">Simple(&quot;RT&quot;, &quot;reference_title&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RT_block"></a><span class="summary-name">RT_block</span> = <code title="Martel.Group(&quot;RT_block&quot;, Martel.Rep1(RT))">Martel.Group(&quot;RT_block&quot;, Martel.Rep1(RT))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RL"></a><span class="summary-name">RL</span> = <code title="Simple(&quot;RL&quot;, &quot;reference_location&quot;)">Simple(&quot;RL&quot;, &quot;reference_location&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RL_block"></a><span class="summary-name">RL_block</span> = <code title="Martel.Group(&quot;RL_block&quot;, Martel.Rep1(RL))">Martel.Group(&quot;RL_block&quot;, Martel.Rep1(RL))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#reference" class="summary-name">reference</a> = <code title="Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_block)+ Martel.Opt(RX)\
+ RA_block+ Martel.Opt(RT_block)+ RL_block)">Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_bl<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#CC_begin" class="summary-name">CC_begin</a> = <code title="Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.ToEol(&quot;comment_text&quot;\
))">Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.T<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#CC" class="summary-name">CC</a> = <code title="Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;comment_text&quot;\
))">Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#single_comment" class="summary-name">single_comment</a> = <code title="Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(CC))">Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#CC_copyright_begin" class="summary-name">CC_copyright_begin</a> = <code title="Martel.Group(&quot;CC_copyright_begin&quot;, Martel.Re(&quot;CC   -+\R&quot;))">Martel.Group(&quot;CC_copyright_begin&quot;, Martel<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#CC_copyright" class="summary-name">CC_copyright</a> = <code title="Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?!-+\R)&quot;)+ Martel.ToEol(\
&quot;copyright&quot;))">Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#CC_copyright_end" class="summary-name">CC_copyright_end</a> = <code title="Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(&quot;CC   -+\R&quot;))">Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#bogus_DR_group" class="summary-name">bogus_DR_group</a> = <code title="Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?P&lt;DR&gt;DR   (?P&lt;database_id\
entifier&gt;MIM); &quot; r&quot;(?P&lt;primary_identifier&gt;601385); &quot; r&quot;(?P&lt;secondary_i\
dentifier&gt;-).\R)&quot;))">Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#comment" class="summary-name">comment</a> = <code title="Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comment)+ Martel.Opt(b\
ogus_DR_group)+ Martel.Opt(CC_copyright_begin+ Martel.Rep(CC_copyright\
)+ CC_copyright_end))">Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comm<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DR_general" class="summary-name">DR_general</a> = <code title="Martel.Re(&quot;(?P&lt;database_identifier&gt;[^;]+);&quot; &quot;(?P&lt;primary_identifier&gt;[^\
;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;([^.\R]|(?!.\R)\.)+)&quot;)">Martel.Re(&quot;(?P&lt;database_identifier&gt;[^;]+);&quot; &quot;(?P&lt;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DR_prosite" class="summary-name">DR_prosite</a> = <code title="Martel.Re(&quot;(?P&lt;database_identifier&gt;(PROSITE|PFAM)); &quot; &quot;(?P&lt;primary_ide\
ntifier&gt;[^;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;[^;]+); &quot; &quot;(?P&lt;status_iden\
tifier&gt;[^.]+)&quot;)">Martel.Re(&quot;(?P&lt;database_identifier&gt;(PROSITE|PFAM)<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DR_embl" class="summary-name">DR_embl</a> = <code title="Martel.Re(&quot;(?P&lt;database_identifier&gt;EMBL); &quot; &quot;(?P&lt;primary_identifier&gt;[^\
;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;[^;]+); &quot; &quot;(?P&lt;status_identifier&gt;[^.\
]+)&quot;)">Martel.Re(&quot;(?P&lt;database_identifier&gt;EMBL); &quot; &quot;(?P&lt;pri<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#DR" class="summary-name">DR</a> = <code title="Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;database_referen\
ce&quot;, Martel.Alt(DR_embl, DR_prosite, DR_general))+ Martel.Str(&quot;.&quot;)+ Ma\
rtel.AnyEol())">Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;dat<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="DR_block"></a><span class="summary-name">DR_block</span> = <code title="Martel.Group(&quot;DR_block&quot;, Martel.Rep1(DR))">Martel.Group(&quot;DR_block&quot;, Martel.Rep1(DR))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="KW"></a><span class="summary-name">KW</span> = <code title="Simple(&quot;KW&quot;, &quot;keyword&quot;)">Simple(&quot;KW&quot;, &quot;keyword&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="KW_block"></a><span class="summary-name">KW_block</span> = <code title="Martel.Group(&quot;KW_block&quot;, Martel.Rep1(KW))">Martel.Group(&quot;KW_block&quot;, Martel.Rep1(KW))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#FT_range" class="summary-name">FT_range</a> = <code title="Martel.Group(&quot;FT&quot;, Martel.Re(&quot;FT   (?P&lt;ft_name&gt;.{8}) &quot; &quot;(?P&lt;ft_from&gt;.{\
6}) (?P&lt;ft_to&gt;.{6})&quot; &quot;(       (?P&lt;ft_description&gt;[^\R]*))?\R&quot;))">Martel.Group(&quot;FT&quot;, Martel.Re(&quot;FT   (?P&lt;ft_name&gt;.{8}<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#FT_continuation" class="summary-name">FT_continuation</a> = <code title="Martel.Group(&quot;FT_continuation&quot;, Martel.Re(&quot;FT                         \
       &quot; &quot;(?P&lt;ft_description&gt;[^\R]*)\R&quot;))">Martel.Group(&quot;FT_continuation&quot;, Martel.Re(&quot;F<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#FT" class="summary-name">FT</a> = <code title="Martel.Group(&quot;feature&quot;, FT_range+ Martel.Rep(FT_continuation))">Martel.Group(&quot;feature&quot;, FT_range+ Martel.Rep(FT_continuat<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="feature_block"></a><span class="summary-name">feature_block</span> = <code title="Martel.Group(&quot;feature_block&quot;, Martel.Rep1(FT))">Martel.Group(&quot;feature_block&quot;, Martel.Rep1(FT))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#SQ" class="summary-name">SQ</a> = <code title="Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence_length&gt;\d+) \
AA;&quot; &quot; +(?P&lt;molecular_weight&gt;\d+) MW;&quot; &quot; +(?P&lt;crc32&gt;\w+) CRC32;\R&quot;))">Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#SQ_data" class="summary-name">SQ_data</a> = <code title="Martel.Group(&quot;SQ_data&quot;, Martel.Re(&quot;     (?P&lt;sequence&gt;[^\R]*)\R&quot;))">Martel.Group(&quot;SQ_data&quot;, Martel.Re(&quot;     (?P&lt;sequence<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#sequence" class="summary-name">sequence</a> = <code title="Martel.Group(&quot;sequence_block&quot;, Martel.Group(&quot;SQ_data_block&quot;, SQ+ Marte\
l.Rep(SQ_data)))">Martel.Group(&quot;sequence_block&quot;, Martel.Group(&quot;SQ_dat<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="end"></a><span class="summary-name">end</span> = <code title="Martel.Group(&quot;END&quot;, Martel.Str(&quot;//&quot;)+ Martel.AnyEol())">Martel.Group(&quot;END&quot;, Martel.Str(&quot;//&quot;)+ Martel.AnyEol())</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#record" class="summary-name">record</a> = <code title="Martel.Group(&quot;swissprot38_record&quot;, ID+ AC+ DT_created+ DT_seq_update+ \
DT_ann_update+ Martel.Opt(DE_block)+ Martel.Opt(GN_block)+ Martel.Opt(\
OS_block)+ Martel.Opt(OG_block)+ Martel.Opt(OC_block)+ Martel.Group(&quot;r\
eference_block&quot;, Martel.Rep(reference))+ comment+ Martel.Opt(DR_block)\
+ Martel.Opt(KW_block)+ Martel.Opt(feature_block)+ sequence+ end)">Martel.Group(&quot;swissprot38_record&quot;, ID+ AC+ DT_created<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#format_expression" class="summary-name">format_expression</a> = <code title="Martel.Group(&quot;swissprot38&quot;, Martel.Rep1(record))">Martel.Group(&quot;swissprot38&quot;, Martel.Rep1(re<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Martel.test.testformats.swissprot38-module.html#format" class="summary-name">format</a> = <code title="Martel.ParseRecords(&quot;swissprot38&quot;, {}, record, RecordReader.EndsWith, \
(&quot;//\n&quot;,))">Martel.ParseRecords(&quot;swissprot38&quot;, {}, record, Record<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
</table>
<!-- ==================== VARIABLES DETAILS ==================== -->
<a name="section-VariablesDetails"></a>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Variables Details</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-VariablesDetails"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
      </tr>
    </table>
  </td>
</tr>
</table>
<a name="ID"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">ID</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;ID&quot;, Martel.Re(r&quot;ID   (?P&lt;entry_name&gt;\w+) +(?P&lt;data_clas<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
s_table&gt;\w+); +&quot; r&quot;(?P&lt;molecule_type&gt;\w+); +(?P&lt;sequence_length&gt;\d+) A<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
A\.\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="AC"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">AC</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;AC&quot;, Martel.Re(r&quot;AC   (?P&lt;ac_number&gt;\w+);( (?P&lt;ac_number<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&gt;\w+);)*\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_created"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_created</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_created&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month&gt;..<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
.)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Created\)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_seq_update"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_seq_update</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last sequence upda<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
te\)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_ann_update"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_ann_update</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last annotation up<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
date\)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="RN"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">RN</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;RN&quot;, Martel.Re(&quot;RN   \[(?P&lt;reference_number&gt;\d+)]\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="RX"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">RX</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;RX&quot;, Martel.Re(&quot;RX   (?P&lt;bibliographic_database_name&gt;\w+<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
); &quot; &quot;(?P&lt;bibliographic_identifier&gt;\d+)\.\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="reference"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">reference</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_block)+ Martel.Opt(RX)<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
+ RA_block+ Martel.Opt(RT_block)+ RL_block)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_begin"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_begin</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.ToEol(&quot;comment_text&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;comment_text&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="single_comment"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">single_comment</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(CC))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright_begin"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright_begin</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright_begin&quot;, Martel.Re(&quot;CC   -+\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?!-+\R)&quot;)+ Martel.ToEol(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;copyright&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright_end"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright_end</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(&quot;CC   -+\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="bogus_DR_group"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">bogus_DR_group</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?P&lt;DR&gt;DR   (?P&lt;database_id<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
entifier&gt;MIM); &quot; r&quot;(?P&lt;primary_identifier&gt;601385); &quot; r&quot;(?P&lt;secondary_i<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
dentifier&gt;-).\R)&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="comment"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">comment</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comment)+ Martel.Opt(b<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ogus_DR_group)+ Martel.Opt(CC_copyright_begin+ Martel.Rep(CC_copyright<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
)+ CC_copyright_end))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_general"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_general</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Re(&quot;(?P&lt;database_identifier&gt;[^;]+);&quot; &quot;(?P&lt;primary_identifier&gt;[^<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;([^.\R]|(?!.\R)\.)+)&quot;)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_prosite"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_prosite</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Re(&quot;(?P&lt;database_identifier&gt;(PROSITE|PFAM)); &quot; &quot;(?P&lt;primary_ide<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ntifier&gt;[^;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;[^;]+); &quot; &quot;(?P&lt;status_iden<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
tifier&gt;[^.]+)&quot;)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_embl"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_embl</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Re(&quot;(?P&lt;database_identifier&gt;EMBL); &quot; &quot;(?P&lt;primary_identifier&gt;[^<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
;]+); &quot; &quot;(?P&lt;secondary_identifier&gt;[^;]+); &quot; &quot;(?P&lt;status_identifier&gt;[^.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
]+)&quot;)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;database_referen<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ce&quot;, Martel.Alt(DR_embl, DR_prosite, DR_general))+ Martel.Str(&quot;.&quot;)+ Ma<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
rtel.AnyEol())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT_range"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT_range</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;FT&quot;, Martel.Re(&quot;FT   (?P&lt;ft_name&gt;.{8}) &quot; &quot;(?P&lt;ft_from&gt;.{<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
6}) (?P&lt;ft_to&gt;.{6})&quot; &quot;(       (?P&lt;ft_description&gt;[^\R]*))?\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT_continuation"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT_continuation</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;FT_continuation&quot;, Martel.Re(&quot;FT                         <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
       &quot; &quot;(?P&lt;ft_description&gt;[^\R]*)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;feature&quot;, FT_range+ Martel.Rep(FT_continuation))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="SQ"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">SQ</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence_length&gt;\d+) <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
AA;&quot; &quot; +(?P&lt;molecular_weight&gt;\d+) MW;&quot; &quot; +(?P&lt;crc32&gt;\w+) CRC32;\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="SQ_data"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">SQ_data</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;SQ_data&quot;, Martel.Re(&quot;     (?P&lt;sequence&gt;[^\R]*)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="sequence"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">sequence</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;sequence_block&quot;, Martel.Group(&quot;SQ_data_block&quot;, SQ+ Marte<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
l.Rep(SQ_data)))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="record"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">record</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;swissprot38_record&quot;, ID+ AC+ DT_created+ DT_seq_update+ <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
DT_ann_update+ Martel.Opt(DE_block)+ Martel.Opt(GN_block)+ Martel.Opt(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
OS_block)+ Martel.Opt(OG_block)+ Martel.Opt(OC_block)+ Martel.Group(&quot;r<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
eference_block&quot;, Martel.Rep(reference))+ comment+ Martel.Opt(DR_block)<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
+ Martel.Opt(KW_block)+ Martel.Opt(feature_block)+ sequence+ end)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="format_expression"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">format_expression</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;swissprot38&quot;, Martel.Rep1(record))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="format"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">format</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.ParseRecords(&quot;swissprot38&quot;, {}, record, RecordReader.EndsWith, <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
(&quot;//\n&quot;,))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
  <tr>
    <td align="left" class="footer">
    Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:30 2008
    </td>
    <td align="right" class="footer">
      <a target="mainFrame" href="http://epydoc.sourceforge.net"
        >http://epydoc.sourceforge.net</a>
    </td>
  </tr>
</table>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>

Perl :: Catalyst :: PostgreSQL :: RPM Valid HTML 4.01 Transitional