<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Martel.test.test_macros</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Martel-module.html">Package Martel</a> ::
<a href="Martel.test-module.html">Package test</a> ::
Module test_macros
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Martel.test.test_macros-pysrc.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<h1 class="epydoc">Source Code for <a href="Martel.test.test_macros-module.html">Module Martel.test.test_macros</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">sax</tt> <tt class="py-keyword">import</tt> <tt class="py-name">handler</tt><tt class="py-op">,</tt> <tt class="py-name">saxutils</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">string</tt><tt class="py-op">,</tt> <tt class="py-name">StringIO</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"># Various "macro" definitions so you don't need to come up with your</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># own regular expressions.</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="must_parse"></a><div id="must_parse-def"><a name="L8"></a><tt class="py-lineno"> 8</tt> <a class="py-toggle" href="#" id="must_parse-toggle" onclick="return toggle('must_parse');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#must_parse">must_parse</a><tt class="py-op">(</tt><tt class="py-param">test_name</tt><tt class="py-op">,</tt> <tt class="py-param">parseString</tt><tt class="py-op">,</tt> <tt class="py-param">term</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="must_parse-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="must_parse-expanded"><a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"> <tt id="link-1" class="py-name" targets="Method Martel.Parser.HeaderFooterParser.parseString()=Martel.Parser.HeaderFooterParser-class.html#parseString,Method Martel.Parser.Parser.parseString()=Martel.Parser.Parser-class.html#parseString,Method Martel.Parser.RecordParser.parseString()=Martel.Parser.RecordParser-class.html#parseString"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-1', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-2" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-2', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Module Bio.AlignAce.Parser=Bio.AlignAce.Parser-module.html,Module Bio.Entrez.Parser=Bio.Entrez.Parser-module.html,Module Bio.MEME.Parser=Bio.MEME.Parser-module.html,Class Bio.SCOP.Cla.Parser=Bio.SCOP.Cla.Parser-class.html,Class Bio.SCOP.Des.Parser=Bio.SCOP.Des.Parser-class.html,Class Bio.SCOP.Dom.Parser=Bio.SCOP.Dom.Parser-class.html,Class Bio.SCOP.Hie.Parser=Bio.SCOP.Hie.Parser-class.html,Class Bio.SCOP.Raf.Parser=Bio.SCOP.Raf.Parser-class.html,Module Martel.Parser=Martel.Parser-module.html,Class Martel.Parser.Parser=Martel.Parser.Parser-class.html"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-3', 'Parser', 'link-3');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Class Martel.Parser.ParserException=Martel.Parser.ParserException-class.html"><a title="Martel.Parser.ParserException" class="py-name" href="#" onclick="return doclink('link-4', 'ParserException', 'link-4');">ParserException</a></tt><tt class="py-op">:</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt><tt class="py-op">(</tt><tt class="py-string">"%s: Cannot parse %s"</tt> <tt class="py-op">%</tt> \ </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">test_name</tt><tt class="py-op">,</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> </tt>
<a name="must_not_parse"></a><div id="must_not_parse-def"><a name="L15"></a><tt class="py-lineno"> 15</tt> <a class="py-toggle" href="#" id="must_not_parse-toggle" onclick="return toggle('must_not_parse');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#must_not_parse">must_not_parse</a><tt class="py-op">(</tt><tt class="py-param">test_name</tt><tt class="py-op">,</tt> <tt class="py-param">parseString</tt><tt class="py-op">,</tt> <tt class="py-param">term</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="must_not_parse-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="must_not_parse-expanded"><a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt id="link-5" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-5', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-6" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-6', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-7', 'Parser', 'link-3');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-8" class="py-name"><a title="Martel.Parser.ParserException" class="py-name" href="#" onclick="return doclink('link-8', 'ParserException', 'link-4');">ParserException</a></tt><tt class="py-op">:</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt><tt class="py-op">(</tt><tt class="py-string">"%s: Could parse %s"</tt> <tt class="py-op">%</tt> \ </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">test_name</tt><tt class="py-op">,</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
<a name="Capture"></a><div id="Capture-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <a class="py-toggle" href="#" id="Capture-toggle" onclick="return toggle('Capture');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Martel.test.test_macros.Capture-class.html">Capture</a><tt class="py-op">(</tt><tt class="py-base-class">handler</tt><tt class="py-op">.</tt><tt class="py-base-class">ContentHandler</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Capture-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Capture-expanded"><a name="Capture.startDocument"></a><div id="Capture.startDocument-def"><a name="L25"></a><tt class="py-lineno"> 25</tt> <a class="py-toggle" href="#" id="Capture.startDocument-toggle" onclick="return toggle('Capture.startDocument');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros.Capture-class.html#startDocument">startDocument</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Capture.startDocument-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Capture.startDocument-expanded"><a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
</div><a name="Capture.startElement"></a><div id="Capture.startElement-def"><a name="L27"></a><tt class="py-lineno"> 27</tt> <a class="py-toggle" href="#" id="Capture.startElement-toggle" onclick="return toggle('Capture.startElement');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros.Capture-class.html#startElement">startElement</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Capture.startElement-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Capture.startElement-expanded"><a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">:</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-9', 'append', 'link-9');">append</a></tt><tt class="py-op">(</tt> <tt class="py-op">(</tt><tt id="link-10" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.name=Bio.Encodings.IUPACEncoding-module.html#name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-10', 'name', 'link-10');">name</a></tt><tt class="py-op">,</tt> <tt id="link-11" class="py-name" targets="Variable Martel.Time.attrs=Martel.Time-module.html#attrs"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-11', 'attrs', 'link-11');">attrs</a></tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-comment"># dup first item</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-12', 'append', 'link-9');">append</a></tt><tt class="py-op">(</tt> <tt class="py-op">(</tt><tt id="link-13" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-13', 'name', 'link-10');">name</a></tt><tt class="py-op">,</tt> <tt id="link-14" class="py-name"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-14', 'attrs', 'link-11');">attrs</a></tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
</div><a name="Capture.endElement"></a><div id="Capture.endElement-def"><a name="L31"></a><tt class="py-lineno"> 31</tt> <a class="py-toggle" href="#" id="Capture.endElement-toggle" onclick="return toggle('Capture.endElement');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros.Capture-class.html#endElement">endElement</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Capture.endElement-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Capture.endElement-expanded"><a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method Bio.Seq.MutableSeq.pop()=Bio.Seq.MutableSeq-class.html#pop"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-15', 'pop', 'link-15');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> </tt>
<a name="has_group"></a><div id="has_group-def"><a name="L34"></a><tt class="py-lineno"> 34</tt> <a class="py-toggle" href="#" id="has_group-toggle" onclick="return toggle('has_group');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#has_group">has_group</a><tt class="py-op">(</tt><tt class="py-param">format</tt><tt class="py-op">,</tt> <tt class="py-param">term</tt><tt class="py-op">,</tt> <tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">attr</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="has_group-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="has_group-expanded"><a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name" targets="Method Bio.Restriction.Restriction.RestrictionBatch.format()=Bio.Restriction.Restriction.RestrictionBatch-class.html#format,Variable Bio.expressions.blast.ncbiblast.format=Bio.expressions.blast.ncbiblast-module.html#format,Variable Bio.expressions.blast.wublast.format=Bio.expressions.blast.wublast-module.html#format,Variable Bio.expressions.blocks.format=Bio.expressions.blocks-module.html#format,Variable Bio.expressions.embl.embl65.format=Bio.expressions.embl.embl65-module.html#format,Variable Bio.expressions.fasta.format=Bio.expressions.fasta-module.html#format,Variable Bio.expressions.genbank.format=Bio.expressions.genbank-module.html#format,Variable Bio.expressions.hmmpfam.format=Bio.expressions.hmmpfam-module.html#format,Variable Bio.expressions.swissprot.ipi.format=Bio.expressions.swissprot.ipi-module.html#format,Variable Bio.expressions.swissprot.speclist.format=Bio.expressions.swissprot.speclist-module.html#format,Variable Bio.expressions.swissprot.sprot38.format=Bio.expressions.swissprot.sprot38-module.html#format,Variable Bio.expressions.swissprot.sprot40.format=Bio.expressions.swissprot.sprot40-module.html#format,Variable Bio.expressions.transfac.format=Bio.expressions.transfac-module.html#format,Variable Martel.test.test_swissprot38.format=Martel.test.test_swissprot38-module.html#format,Variable Martel.test.testformats.swissprot38.format=Martel.test.testformats.swissprot38-module.html#format"><a title="Bio.Restriction.Restriction.RestrictionBatch.format
Bio.expressions.blast.ncbiblast.format
Bio.expressions.blast.wublast.format
Bio.expressions.blocks.format
Bio.expressions.embl.embl65.format
Bio.expressions.fasta.format
Bio.expressions.genbank.format
Bio.expressions.hmmpfam.format
Bio.expressions.swissprot.ipi.format
Bio.expressions.swissprot.speclist.format
Bio.expressions.swissprot.sprot38.format
Bio.expressions.swissprot.sprot40.format
Bio.expressions.transfac.format
Martel.test.test_swissprot38.format
Martel.test.testformats.swissprot38.format" class="py-name" href="#" onclick="return doclink('link-16', 'format', 'link-16');">format</a></tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Method Bio.config.FormatRegistry.FormatObject.make_parser()=Bio.config.FormatRegistry.FormatObject-class.html#make_parser,Method Bio.config._support.make_cached_expression.make_parser()=Bio.config._support.make_cached_expression-class.html#make_parser,Method Martel.Expression.Expression.make_parser()=Martel.Expression.Expression-class.html#make_parser,Method Martel.Expression.HeaderFooter.make_parser()=Martel.Expression.HeaderFooter-class.html#make_parser,Method Martel.Expression.ParseRecords.make_parser()=Martel.Expression.ParseRecords-class.html#make_parser"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-17', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-name">cap</tt> <tt class="py-op">=</tt> <tt id="link-18" class="py-name" targets="Class Martel.test.test_macros.Capture=Martel.test.test_macros.Capture-class.html"><a title="Martel.test.test_macros.Capture" class="py-name" href="#" onclick="return doclink('link-18', 'Capture', 'link-18');">Capture</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt class="py-name">setContentHandler</tt><tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">)</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-19', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-20" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-20', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-21', 'Parser', 'link-3');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="Martel.Parser.ParserException" class="py-name" href="#" onclick="return doclink('link-22', 'ParserException', 'link-4');">ParserException</a></tt><tt class="py-op">:</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt><tt class="py-op">(</tt><tt class="py-string">"Cannot parse %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-string">"Should only have dup of first item"</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt id="link-23" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-23', 'name', 'link-10');">name</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt id="link-24" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-24', 'name', 'link-10');">name</a></tt><tt class="py-op">)</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"x"</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-name">attr</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">attr</tt><tt class="py-op">)</tt> </tt>
</div><a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
<a name="has_no_group"></a><div id="has_no_group-def"><a name="L46"></a><tt class="py-lineno"> 46</tt> <a class="py-toggle" href="#" id="has_no_group-toggle" onclick="return toggle('has_no_group');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#has_no_group">has_no_group</a><tt class="py-op">(</tt><tt class="py-param">format</tt><tt class="py-op">,</tt> <tt class="py-param">term</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="has_no_group-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="has_no_group-expanded"><a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Bio.Restriction.Restriction.RestrictionBatch.format
Bio.expressions.blast.ncbiblast.format
Bio.expressions.blast.wublast.format
Bio.expressions.blocks.format
Bio.expressions.embl.embl65.format
Bio.expressions.fasta.format
Bio.expressions.genbank.format
Bio.expressions.hmmpfam.format
Bio.expressions.swissprot.ipi.format
Bio.expressions.swissprot.speclist.format
Bio.expressions.swissprot.sprot38.format
Bio.expressions.swissprot.sprot40.format
Bio.expressions.transfac.format
Martel.test.test_swissprot38.format
Martel.test.testformats.swissprot38.format" class="py-name" href="#" onclick="return doclink('link-25', 'format', 'link-16');">format</a></tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-26', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-name">cap</tt> <tt class="py-op">=</tt> <tt id="link-27" class="py-name"><a title="Martel.test.test_macros.Capture" class="py-name" href="#" onclick="return doclink('link-27', 'Capture', 'link-18');">Capture</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt class="py-name">setContentHandler</tt><tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-28', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-29" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-29', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-30', 'Parser', 'link-3');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="Martel.Parser.ParserException" class="py-name" href="#" onclick="return doclink('link-31', 'ParserException', 'link-4');">ParserException</a></tt><tt class="py-op">:</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt><tt class="py-op">(</tt><tt class="py-string">"Cannot parse %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">term</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">,</tt> <tt class="py-string">"Should have nothing, not %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">cap</tt><tt class="py-op">.</tt><tt class="py-name">capture</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
</div><a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> </tt>
<a name="test_Float"></a><div id="test_Float-def"><a name="L58"></a><tt class="py-lineno"> 58</tt> <a class="py-toggle" href="#" id="test_Float-toggle" onclick="return toggle('test_Float');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Float">test_Float</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Float-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Float-expanded"><a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt id="link-32" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-32', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-33', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Class Bio.Decode.Float=Bio.Decode.Float-class.html,Function Martel.Float()=Martel-module.html#Float"><a title="Bio.Decode.Float
Martel.Float" class="py-name" href="#" onclick="return doclink('link-34', 'Float', 'link-34');">Float</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-35', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-36', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">head</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-string">"-"</tt><tt class="py-op">,</tt> <tt class="py-string">"+"</tt><tt class="py-op">,</tt> <tt class="py-string">"-1"</tt><tt class="py-op">,</tt> <tt class="py-string">"+2"</tt><tt class="py-op">,</tt> <tt class="py-string">"3"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">tail</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-string">"E0"</tt><tt class="py-op">,</tt> <tt class="py-string">"E+0"</tt><tt class="py-op">,</tt> <tt class="py-string">"E-0"</tt><tt class="py-op">,</tt> <tt class="py-string">"E4"</tt><tt class="py-op">,</tt> <tt class="py-string">"e+5"</tt><tt class="py-op">,</tt> <tt class="py-string">"e-6"</tt><tt class="py-op">,</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">"E10"</tt><tt class="py-op">,</tt> <tt class="py-string">"E-19"</tt><tt class="py-op">,</tt> <tt class="py-string">"e+28"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">middle</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">".1"</tt><tt class="py-op">,</tt> <tt class="py-string">"5."</tt><tt class="py-op">,</tt> <tt class="py-string">"7.6"</tt><tt class="py-op">,</tt> <tt class="py-string">"989"</tt><tt class="py-op">,</tt> <tt class="py-string">".0001"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt id="link-37" class="py-name" targets="Function Martel.test.test_macros.must_parse()=Martel.test.test_macros-module.html#must_parse"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-37', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Float"</tt><tt class="py-op">,</tt> <tt id="link-38" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-38', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">head</tt> <tt class="py-op">+</tt> <tt class="py-name">middle</tt> <tt class="py-op">+</tt> <tt class="py-name">tail</tt><tt class="py-op">)</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"1E"</tt><tt class="py-op">,</tt> <tt class="py-string">".E"</tt><tt class="py-op">,</tt> <tt class="py-string">"1.E"</tt><tt class="py-op">,</tt> <tt class="py-string">"1/"</tt><tt class="py-op">,</tt> <tt class="py-string">"E0"</tt><tt class="py-op">,</tt> <tt class="py-string">"1.2E0K"</tt><tt class="py-op">,</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-string">"=1"</tt><tt class="py-op">,</tt> <tt class="py-string">"+-1"</tt><tt class="py-op">,</tt> <tt class="py-string">"."</tt><tt class="py-op">,</tt> <tt class="py-string">"e"</tt><tt class="py-op">,</tt> <tt class="py-string">"-e"</tt><tt class="py-op">,</tt> <tt class="py-string">"-e0"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt id="link-39" class="py-name" targets="Function Martel.test.test_macros.must_not_parse()=Martel.test.test_macros-module.html#must_not_parse"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-39', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Float"</tt><tt class="py-op">,</tt> <tt id="link-40" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-40', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt id="link-41" class="py-name" targets="Function Martel.test.test_macros.has_group()=Martel.test.test_macros-module.html#has_group"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-41', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-42" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-42', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="Bio.Decode.Float
Martel.Float" class="py-name" href="#" onclick="return doclink('link-43', 'Float', 'link-34');">Float</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"spot"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"1.0"</tt><tt class="py-op">,</tt> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"spot"</tt><tt class="py-op">)</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt id="link-44" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-44', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-45" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-45', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="Bio.Decode.Float
Martel.Float" class="py-name" href="#" onclick="return doclink('link-46', 'Float', 'link-34');">Float</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"SPOT"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"0.8"</tt><tt class="py-op">,</tt> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"SPOT"</tt><tt class="py-op">)</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt id="link-47" class="py-name" targets="Function Martel.test.test_macros.has_no_group()=Martel.test.test_macros-module.html#has_no_group"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-47', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-48" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-48', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Bio.Decode.Float
Martel.Float" class="py-name" href="#" onclick="return doclink('link-49', 'Float', 'link-34');">Float</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"+1"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> </tt>
<a name="test_Digits"></a><div id="test_Digits-def"><a name="L75"></a><tt class="py-lineno"> 75</tt> <a class="py-toggle" href="#" id="test_Digits-toggle" onclick="return toggle('test_Digits');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Digits">test_Digits</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Digits-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Digits-expanded"><a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt id="link-50" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-50', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-51" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-51', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-52" class="py-name" targets="Function Martel.Digits()=Martel-module.html#Digits"><a title="Martel.Digits" class="py-name" href="#" onclick="return doclink('link-52', 'Digits', 'link-52');">Digits</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-53', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-54', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"0"</tt><tt class="py-op">,</tt> <tt class="py-string">"1"</tt><tt class="py-op">,</tt> <tt class="py-string">"2"</tt><tt class="py-op">,</tt> <tt class="py-string">"3"</tt><tt class="py-op">,</tt> <tt class="py-string">"4"</tt><tt class="py-op">,</tt> <tt class="py-string">"5"</tt><tt class="py-op">,</tt> <tt class="py-string">"6"</tt><tt class="py-op">,</tt> <tt class="py-string">"7"</tt><tt class="py-op">,</tt> <tt class="py-string">"8"</tt><tt class="py-op">,</tt> <tt class="py-string">"9"</tt><tt class="py-op">,</tt> <tt class="py-string">"10"</tt><tt class="py-op">,</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-string">"20"</tt><tt class="py-op">,</tt> <tt class="py-string">"99"</tt><tt class="py-op">,</tt> <tt class="py-string">"453"</tt><tt class="py-op">,</tt> <tt class="py-string">"34653"</tt><tt class="py-op">,</tt> <tt class="py-string">"34359739467623"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-55', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Digits"</tt><tt class="py-op">,</tt> <tt id="link-56" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-56', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"A"</tt><tt class="py-op">,</tt> <tt class="py-string">"1A"</tt><tt class="py-op">,</tt> <tt class="py-string">"123123123T"</tt><tt class="py-op">,</tt> <tt class="py-string">"-1"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-57" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-57', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Digits"</tt><tt class="py-op">,</tt> <tt id="link-58" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-58', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt id="link-59" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-59', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-60" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-60', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="Martel.Digits" class="py-name" href="#" onclick="return doclink('link-61', 'Digits', 'link-52');">Digits</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"this"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"5"</tt><tt class="py-op">,</tt> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"this"</tt><tt class="py-op">)</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-62', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-63" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-63', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="Martel.Digits" class="py-name" href="#" onclick="return doclink('link-64', 'Digits', 'link-52');">Digits</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"that"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"9"</tt><tt class="py-op">,</tt> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"that"</tt><tt class="py-op">)</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt id="link-65" class="py-name"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-65', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-66" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-66', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="Martel.Digits" class="py-name" href="#" onclick="return doclink('link-67', 'Digits', 'link-52');">Digits</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"00"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> </tt>
<a name="test_Word"></a><div id="test_Word-def"><a name="L88"></a><tt class="py-lineno"> 88</tt> <a class="py-toggle" href="#" id="test_Word-toggle" onclick="return toggle('test_Word');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Word">test_Word</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Word-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Word-expanded"><a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt id="link-68" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-68', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-69" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-69', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Function Martel.Word()=Martel-module.html#Word"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-70', 'Word', 'link-70');">Word</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-71" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-71', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-72', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"Andrew"</tt><tt class="py-op">,</tt> <tt class="py-string">"Dalke"</tt><tt class="py-op">,</tt> <tt class="py-string">"was_here"</tt><tt class="py-op">,</tt> <tt class="py-string">"test12"</tt><tt class="py-op">,</tt> <tt class="py-string">"12df"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt id="link-73" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-73', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Word"</tt><tt class="py-op">,</tt> <tt id="link-74" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-74', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"*"</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-string">"this-that"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt id="link-75" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-75', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Word"</tt><tt class="py-op">,</tt> <tt id="link-76" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-76', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt id="link-77" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-77', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-78" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-78', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-79', 'Word', 'link-70');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"fly"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"_"</tt><tt class="py-op">,</tt> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"fly"</tt><tt class="py-op">)</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt id="link-80" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-80', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-81" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-81', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-82', 'Word', 'link-70');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"boy"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"9"</tt><tt class="py-op">,</tt> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"boy"</tt><tt class="py-op">)</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt id="link-83" class="py-name"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-83', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-84" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-84', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-85', 'Word', 'link-70');">Word</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"__"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
<a name="test_Spaces"></a><div id="test_Spaces-def"><a name="L99"></a><tt class="py-lineno"> 99</tt> <a class="py-toggle" href="#" id="test_Spaces-toggle" onclick="return toggle('test_Spaces');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Spaces">test_Spaces</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Spaces-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Spaces-expanded"><a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt id="link-86" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-86', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-87" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-87', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name" targets="Function Martel.Spaces()=Martel-module.html#Spaces"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-88', 'Spaces', 'link-88');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-89', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-90', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">,</tt> <tt class="py-string">"\t"</tt><tt class="py-op">,</tt> <tt class="py-string">" "</tt><tt class="py-op">,</tt> <tt class="py-string">" \t \t\t "</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt id="link-91" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-91', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Spaces"</tt><tt class="py-op">,</tt> <tt id="link-92" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-92', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">term</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">"\n"</tt><tt class="py-op">,</tt> <tt class="py-string">" \n"</tt><tt class="py-op">,</tt> <tt class="py-string">" X "</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-93" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-93', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Spaces"</tt><tt class="py-op">,</tt> <tt id="link-94" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-94', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">term</tt><tt class="py-op">)</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt id="link-95" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-95', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-96" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-96', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-97', 'Spaces', 'link-88');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"pick"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">" "</tt><tt class="py-op">*</tt><tt class="py-number">100</tt><tt class="py-op">,</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"pick"</tt><tt class="py-op">)</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-98" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-98', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-99" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-99', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-100', 'Spaces', 'link-88');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"name"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"\t"</tt><tt class="py-op">*</tt><tt class="py-number">200</tt><tt class="py-op">,</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"name"</tt><tt class="py-op">)</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-101" class="py-name"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-101', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-102" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-102', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-103', 'Spaces', 'link-88');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">" "</tt><tt class="py-op">)</tt> </tt>
</div><a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> </tt>
<a name="test_Unprintable"></a><div id="test_Unprintable-def"><a name="L111"></a><tt class="py-lineno">111</tt> <a class="py-toggle" href="#" id="test_Unprintable-toggle" onclick="return toggle('test_Unprintable');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Unprintable">test_Unprintable</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Unprintable-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Unprintable-expanded"><a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-104" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-104', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-105" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-105', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-106" class="py-name" targets="Function Martel.Unprintable()=Martel-module.html#Unprintable"><a title="Martel.Unprintable" class="py-name" href="#" onclick="return doclink('link-106', 'Unprintable', 'link-106');">Unprintable</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-107', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-108', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">unprintables</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-109" class="py-name" targets="Variable Bio.PDB.Polypeptide.i=Bio.PDB.Polypeptide-module.html#i"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-109', 'i', 'link-109');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">256</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">c</tt> <tt class="py-op">=</tt> <tt class="py-name">chr</tt><tt class="py-op">(</tt><tt id="link-110" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-110', 'i', 'link-109');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">c</tt> <tt class="py-keyword">in</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">printable</tt><tt class="py-op">:</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt id="link-111" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-111', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Unprintable"</tt><tt class="py-op">,</tt> <tt id="link-112" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-112', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">c</tt><tt class="py-op">)</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt id="link-113" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-113', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Unprintable"</tt><tt class="py-op">,</tt> <tt id="link-114" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-114', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">c</tt><tt class="py-op">)</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">unprintables</tt><tt class="py-op">.</tt><tt id="link-115" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-115', 'append', 'link-9');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">c</tt><tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt id="link-116" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-116', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-117" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-117', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="Martel.Unprintable" class="py-name" href="#" onclick="return doclink('link-118', 'Unprintable', 'link-106');">Unprintable</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"import"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">unprintables</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"import"</tt><tt class="py-op">)</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-119" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-119', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-120" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-120', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="Martel.Unprintable" class="py-name" href="#" onclick="return doclink('link-121', 'Unprintable', 'link-106');">Unprintable</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"export"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">unprintables</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"export"</tt><tt class="py-op">)</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-122" class="py-name"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-122', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-123" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-123', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="Martel.Unprintable" class="py-name" href="#" onclick="return doclink('link-124', 'Unprintable', 'link-106');">Unprintable</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">unprintables</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div><a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> </tt>
<a name="test_Punctuation"></a><div id="test_Punctuation-def"><a name="L128"></a><tt class="py-lineno">128</tt> <a class="py-toggle" href="#" id="test_Punctuation-toggle" onclick="return toggle('test_Punctuation');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_Punctuation">test_Punctuation</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_Punctuation-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_Punctuation-expanded"><a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt id="link-125" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-125', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt id="link-126" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-126', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-127" class="py-name" targets="Function Martel.Punctuation()=Martel-module.html#Punctuation"><a title="Martel.Punctuation" class="py-name" href="#" onclick="return doclink('link-127', 'Punctuation', 'link-127');">Punctuation</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-128" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-128', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-129" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-129', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-130" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-130', 'i', 'link-109');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">256</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">c</tt> <tt class="py-op">=</tt> <tt class="py-name">chr</tt><tt class="py-op">(</tt><tt id="link-131" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-131', 'i', 'link-109');">i</a></tt><tt class="py-op">)</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">c</tt> <tt class="py-keyword">in</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">punctuation</tt><tt class="py-op">:</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt id="link-132" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-132', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"Punctuation"</tt><tt class="py-op">,</tt> <tt id="link-133" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-133', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">c</tt><tt class="py-op">)</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt id="link-134" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-134', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"not Punctuation"</tt><tt class="py-op">,</tt> <tt id="link-135" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-135', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-name">c</tt><tt class="py-op">)</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt id="link-136" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-136', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-137" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-137', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="Martel.Punctuation" class="py-name" href="#" onclick="return doclink('link-138', 'Punctuation', 'link-127');">Punctuation</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"Iran"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">punctuation</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt class="py-string">"Iran"</tt><tt class="py-op">)</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt id="link-139" class="py-name"><a title="Martel.test.test_macros.has_group" class="py-name" href="#" onclick="return doclink('link-139', 'has_group', 'link-41');">has_group</a></tt><tt class="py-op">(</tt><tt id="link-140" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-140', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-141" class="py-name"><a title="Martel.Punctuation" class="py-name" href="#" onclick="return doclink('link-141', 'Punctuation', 'link-127');">Punctuation</a></tt><tt class="py-op">(</tt><tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"x"</tt><tt class="py-op">:</tt> <tt class="py-string">"Iraq"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">punctuation</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"eggs"</tt><tt class="py-op">,</tt> <tt class="py-string">"Iraq"</tt><tt class="py-op">)</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt id="link-142" class="py-name"><a title="Martel.test.test_macros.has_no_group" class="py-name" href="#" onclick="return doclink('link-142', 'has_no_group', 'link-47');">has_no_group</a></tt><tt class="py-op">(</tt><tt id="link-143" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-143', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="Martel.Punctuation" class="py-name" href="#" onclick="return doclink('link-144', 'Punctuation', 'link-127');">Punctuation</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">punctuation</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div><a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> </tt>
<a name="test_ToEol"></a><div id="test_ToEol-def"><a name="L143"></a><tt class="py-lineno">143</tt> <a class="py-toggle" href="#" id="test_ToEol-toggle" onclick="return toggle('test_ToEol');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_ToEol">test_ToEol</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_ToEol-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_ToEol-expanded"><a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-145" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-145', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-146" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-146', 'ToEol', 'link-146');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"SantaFe"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-147" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-147', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt id="link-148" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-148', 'parseString', 'link-1');">parseString</a></tt> <tt class="py-op">=</tt> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-149" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-149', 'parseString', 'link-1');">parseString</a></tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt id="link-150" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-150', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"ToEol"</tt><tt class="py-op">,</tt> <tt id="link-151" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-151', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-string">"Testing, 1, 2, 3!\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt id="link-152" class="py-name"><a title="Martel.test.test_macros.must_parse" class="py-name" href="#" onclick="return doclink('link-152', 'must_parse', 'link-37');">must_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"ToEol"</tt><tt class="py-op">,</tt> <tt id="link-153" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-153', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-string">"Andrew\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt id="link-154" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-154', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"ToEol"</tt><tt class="py-op">,</tt> <tt id="link-155" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-155', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-string">"Dalke"</tt><tt class="py-op">)</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt id="link-156" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-156', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"ToEol"</tt><tt class="py-op">,</tt> <tt id="link-157" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-157', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-string">"This\nis"</tt><tt class="py-op">)</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt id="link-158" class="py-name"><a title="Martel.test.test_macros.must_not_parse" class="py-name" href="#" onclick="return doclink('link-158', 'must_not_parse', 'link-39');">must_not_parse</a></tt><tt class="py-op">(</tt><tt class="py-string">"ToEol"</tt><tt class="py-op">,</tt> <tt id="link-159" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-159', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">,</tt> <tt class="py-string">"This\nis a test\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-name">file</tt> <tt class="py-op">=</tt> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt class="py-name">setContentHandler</tt><tt class="py-op">(</tt><tt class="py-name">saxutils</tt><tt class="py-op">.</tt><tt class="py-name">XMLGenerator</tt><tt class="py-op">(</tt><tt class="py-name">file</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-160" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-160', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-string">"This is a test.\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt id="link-161" class="py-name" targets="Variable Martel.test.test_swissprot38.s=Martel.test.test_swissprot38-module.html#s"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-161', 's', 'link-161');">s</a></tt> <tt class="py-op">=</tt> <tt class="py-name">file</tt><tt class="py-op">.</tt><tt class="py-name">getvalue</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt id="link-162" class="py-name" targets="Variable Bio.expressions.blast.ncbiblast.expect=Bio.expressions.blast.ncbiblast-module.html#expect"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-162', 'expect', 'link-162');">expect</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"<SantaFe>This is a test.</SantaFe>\n"</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt id="link-163" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.find()=Bio.EUtils.POM.ElementNode-class.html#find,Method Bio.NeuralNetwork.Gene.Motif.MotifFinder.find()=Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find()=Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find()=Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#find,Method Bio.biblio.Biblio.find()=Bio.biblio.Biblio-class.html#find,Function Bio.triefind.find()=Bio.triefind-module.html#find"><a title="Bio.EUtils.POM.ElementNode.find
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find
Bio.biblio.Biblio.find
Bio.triefind.find" class="py-name" href="#" onclick="return doclink('link-163', 'find', 'link-163');">find</a></tt><tt class="py-op">(</tt><tt id="link-164" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-164', 's', 'link-161');">s</a></tt><tt class="py-op">,</tt> <tt id="link-165" class="py-name"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-165', 'expect', 'link-162');">expect</a></tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"Got: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt id="link-166" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-166', 's', 'link-161');">s</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt>
<a name="test_ToSep"></a><div id="test_ToSep-def"><a name="L159"></a><tt class="py-lineno">159</tt> <a class="py-toggle" href="#" id="test_ToSep-toggle" onclick="return toggle('test_ToSep');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_ToSep">test_ToSep</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_ToSep-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_ToSep-expanded"><a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt id="link-167" class="py-name" targets="Variable Bio.Affy.CelFile.exp=Bio.Affy.CelFile-module.html#exp,Variable Bio.LogisticRegression.exp=Bio.LogisticRegression-module.html#exp,Variable Bio.MarkovModel.exp=Bio.MarkovModel-module.html#exp,Variable Bio.MaxEntropy.exp=Bio.MaxEntropy-module.html#exp,Variable Bio.NaiveBayes.exp=Bio.NaiveBayes-module.html#exp,Variable Bio.Statistics.lowess.exp=Bio.Statistics.lowess-module.html#exp,Variable Bio.distance.exp=Bio.distance-module.html#exp,Variable Bio.kNN.exp=Bio.kNN-module.html#exp"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-167', 'exp', 'link-167');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-168" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-168', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-169" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-169', 'Group', 'link-169');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"test"</tt><tt class="py-op">,</tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt id="link-170" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-170', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-171" class="py-name" targets="Function Martel.ToSep()=Martel-module.html#ToSep"><a title="Martel.ToSep" class="py-name" href="#" onclick="return doclink('link-171', 'ToSep', 'link-171');">ToSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"colon"</tt><tt class="py-op">,</tt> <tt class="py-string">":"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt id="link-172" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-172', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="Martel.ToSep" class="py-name" href="#" onclick="return doclink('link-173', 'ToSep', 'link-171');">ToSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"space"</tt><tt class="py-op">,</tt> <tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt id="link-174" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-174', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="Martel.ToSep" class="py-name" href="#" onclick="return doclink('link-175', 'ToSep', 'link-171');">ToSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"empty"</tt><tt class="py-op">,</tt> <tt class="py-string">"!"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-176" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-176', 'exp', 'link-167');">exp</a></tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-177', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-name">file</tt> <tt class="py-op">=</tt> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt class="py-name">setContentHandler</tt><tt class="py-op">(</tt><tt class="py-name">saxutils</tt><tt class="py-op">.</tt><tt class="py-name">XMLGenerator</tt><tt class="py-op">(</tt><tt class="py-name">file</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-178', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-string">"q:wxy !"</tt><tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt id="link-179" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-179', 's', 'link-161');">s</a></tt> <tt class="py-op">=</tt> <tt class="py-name">file</tt><tt class="py-op">.</tt><tt class="py-name">getvalue</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt id="link-180" class="py-name"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-180', 'expect', 'link-162');">expect</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"<test><colon>q</colon>:<space>wxy</space> <empty></empty>!</test>"</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt id="link-181" class="py-name"><a title="Bio.EUtils.POM.ElementNode.find
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find
Bio.biblio.Biblio.find
Bio.triefind.find" class="py-name" href="#" onclick="return doclink('link-181', 'find', 'link-163');">find</a></tt><tt class="py-op">(</tt><tt id="link-182" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-182', 's', 'link-161');">s</a></tt><tt class="py-op">,</tt> <tt id="link-183" class="py-name"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-183', 'expect', 'link-162');">expect</a></tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"Got: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt id="link-184" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-184', 's', 'link-161');">s</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
<a name="test_DelimitedFields"></a><div id="test_DelimitedFields-def"><a name="L174"></a><tt class="py-lineno">174</tt> <a class="py-toggle" href="#" id="test_DelimitedFields-toggle" onclick="return toggle('test_DelimitedFields');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test_DelimitedFields">test_DelimitedFields</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_DelimitedFields-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_DelimitedFields-expanded"><a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt id="link-185" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-185', 'exp', 'link-167');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-186" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-186', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-187" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-187', 'Group', 'link-169');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"test"</tt><tt class="py-op">,</tt> <tt id="link-188" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-188', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-189" class="py-name" targets="Function Martel.DelimitedFields()=Martel-module.html#DelimitedFields"><a title="Martel.DelimitedFields" class="py-name" href="#" onclick="return doclink('link-189', 'DelimitedFields', 'link-189');">DelimitedFields</a></tt><tt class="py-op">(</tt><tt class="py-string">"Field"</tt><tt class="py-op">,</tt> <tt class="py-string">"/"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-190" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-190', 'exp', 'link-167');">exp</a></tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-191', 'make_parser', 'link-17');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">file</tt> <tt class="py-op">=</tt> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt class="py-name">setContentHandler</tt><tt class="py-op">(</tt><tt class="py-name">saxutils</tt><tt class="py-op">.</tt><tt class="py-name">XMLGenerator</tt><tt class="py-op">(</tt><tt class="py-name">file</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="Martel.Parser.HeaderFooterParser.parseString
Martel.Parser.Parser.parseString
Martel.Parser.RecordParser.parseString" class="py-name" href="#" onclick="return doclink('link-192', 'parseString', 'link-1');">parseString</a></tt><tt class="py-op">(</tt><tt class="py-string">"a/b/cde/f//\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt id="link-193" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-193', 's', 'link-161');">s</a></tt> <tt class="py-op">=</tt> <tt class="py-name">file</tt><tt class="py-op">.</tt><tt class="py-name">getvalue</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt id="link-194" class="py-name"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-194', 'expect', 'link-162');">expect</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"<test><Field>a</Field>/<Field>b</Field>/<Field>cde</Field>/"</tt> \ </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-string">"<Field>f</Field>/<Field></Field>/<Field></Field>\n</test>"</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="Bio.EUtils.POM.ElementNode.find
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find
Bio.biblio.Biblio.find
Bio.triefind.find" class="py-name" href="#" onclick="return doclink('link-195', 'find', 'link-163');">find</a></tt><tt class="py-op">(</tt><tt id="link-196" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-196', 's', 'link-161');">s</a></tt><tt class="py-op">,</tt> <tt id="link-197" class="py-name"><a title="Bio.expressions.blast.ncbiblast.expect" class="py-name" href="#" onclick="return doclink('link-197', 'expect', 'link-162');">expect</a></tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"Got: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt id="link-198" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-198', 's', 'link-161');">s</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> </tt>
<a name="test"></a><div id="test-def"><a name="L187"></a><tt class="py-lineno">187</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_macros-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test-expanded"><a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt id="link-199" class="py-name" targets="Function Martel.test.test_macros.test_Digits()=Martel.test.test_macros-module.html#test_Digits"><a title="Martel.test.test_macros.test_Digits" class="py-name" href="#" onclick="return doclink('link-199', 'test_Digits', 'link-199');">test_Digits</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt id="link-200" class="py-name" targets="Function Martel.test.test_macros.test_Float()=Martel.test.test_macros-module.html#test_Float"><a title="Martel.test.test_macros.test_Float" class="py-name" href="#" onclick="return doclink('link-200', 'test_Float', 'link-200');">test_Float</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt id="link-201" class="py-name" targets="Function Martel.test.test_macros.test_Word()=Martel.test.test_macros-module.html#test_Word"><a title="Martel.test.test_macros.test_Word" class="py-name" href="#" onclick="return doclink('link-201', 'test_Word', 'link-201');">test_Word</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt id="link-202" class="py-name" targets="Function Martel.test.test_macros.test_Spaces()=Martel.test.test_macros-module.html#test_Spaces"><a title="Martel.test.test_macros.test_Spaces" class="py-name" href="#" onclick="return doclink('link-202', 'test_Spaces', 'link-202');">test_Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt id="link-203" class="py-name" targets="Function Martel.test.test_macros.test_Unprintable()=Martel.test.test_macros-module.html#test_Unprintable"><a title="Martel.test.test_macros.test_Unprintable" class="py-name" href="#" onclick="return doclink('link-203', 'test_Unprintable', 'link-203');">test_Unprintable</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt id="link-204" class="py-name" targets="Function Martel.test.test_macros.test_Punctuation()=Martel.test.test_macros-module.html#test_Punctuation"><a title="Martel.test.test_macros.test_Punctuation" class="py-name" href="#" onclick="return doclink('link-204', 'test_Punctuation', 'link-204');">test_Punctuation</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt id="link-205" class="py-name" targets="Function Martel.test.test_macros.test_ToEol()=Martel.test.test_macros-module.html#test_ToEol"><a title="Martel.test.test_macros.test_ToEol" class="py-name" href="#" onclick="return doclink('link-205', 'test_ToEol', 'link-205');">test_ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt id="link-206" class="py-name" targets="Function Martel.test.test_macros.test_ToSep()=Martel.test.test_macros-module.html#test_ToSep"><a title="Martel.test.test_macros.test_ToSep" class="py-name" href="#" onclick="return doclink('link-206', 'test_ToSep', 'link-206');">test_ToSep</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt id="link-207" class="py-name" targets="Function Martel.test.test_macros.test_DelimitedFields()=Martel.test.test_macros-module.html#test_DelimitedFields"><a title="Martel.test.test_macros.test_DelimitedFields" class="py-name" href="#" onclick="return doclink('link-207', 'test_DelimitedFields', 'link-207');">test_DelimitedFields</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt id="link-208" class="py-name" targets="Function Bio.Decode.test()=Bio.Decode-module.html#test,Function Bio.EUtils.ReseekFile.test()=Bio.EUtils.ReseekFile-module.html#test,Package Martel.test=Martel.test-module.html,Method Martel.test.support.Storage.test()=Martel.test.support.Storage-class.html#test,Function Martel.test.test()=Martel.test-module.html#test,Function Martel.test.test_Expression.test()=Martel.test.test_Expression-module.html#test,Function Martel.test.test_Generate.test()=Martel.test.test_Generate-module.html#test,Function Martel.test.test_IterParser.test()=Martel.test.test_IterParser-module.html#test,Function Martel.test.test_Iterator.test()=Martel.test.test_Iterator-module.html#test,Function Martel.test.test_LAX.test()=Martel.test.test_LAX-module.html#test,Function Martel.test.test_ParseRecords.test()=Martel.test.test_ParseRecords-module.html#test,Function Martel.test.test_Parser.test()=Martel.test.test_Parser-module.html#test,Function Martel.test.test_RecordReader.test()=Martel.test.test_RecordReader-module.html#test,Function Martel.test.test_RecordReader2.test()=Martel.test.test_RecordReader2-module.html#test,Function Martel.test.test_Time.test()=Martel.test.test_Time-module.html#test,Function Martel.test.test_attrs.test()=Martel.test.test_attrs-module.html#test,Function Martel.test.test_convert_re.test()=Martel.test.test_convert_re-module.html#test,Function Martel.test.test_delimiter.test()=Martel.test.test_delimiter-module.html#test,Function Martel.test.test_macros.test()=Martel.test.test_macros-module.html#test,Function Martel.test.test_optimize.test()=Martel.test.test_optimize-module.html#test,Function Martel.test.test_swissprot38.test()=Martel.test.test_swissprot38-module.html#test"><a title="Bio.Decode.test
Bio.EUtils.ReseekFile.test
Martel.test
Martel.test.support.Storage.test
Martel.test.test
Martel.test.test_Expression.test
Martel.test.test_Generate.test
Martel.test.test_IterParser.test
Martel.test.test_Iterator.test
Martel.test.test_LAX.test
Martel.test.test_ParseRecords.test
Martel.test.test_Parser.test
Martel.test.test_RecordReader.test
Martel.test.test_RecordReader2.test
Martel.test.test_Time.test
Martel.test.test_attrs.test
Martel.test.test_convert_re.test
Martel.test.test_delimiter.test
Martel.test.test_macros.test
Martel.test.test_optimize.test
Martel.test.test_swissprot38.test" class="py-name" href="#" onclick="return doclink('link-208', 'test', 'link-208');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> </tt><script type="text/javascript">
<!--
expandto(location.href);
// -->
</script>
</pre>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:27:06 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
