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<a href="Martel-module.html">Package Martel</a> ::
<a href="Martel.test-module.html">Package test</a> ::
Module test_convert_re
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<h1 class="epydoc">Source Code for <a href="Martel.test.test_convert_re-module.html">Module Martel.test.test_convert_re</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module Martel.convert_re=Martel.convert_re-module.html"><a title="Martel.convert_re" class="py-name" href="#" onclick="return doclink('link-1', 'convert_re', 'link-1');">convert_re</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
<a name="test"></a><div id="test-def"><a name="L3"></a><tt class="py-lineno"> 3</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_convert_re-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="test-expanded"><a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"> <tt id="link-2" class="py-name" targets="Variable BioSQL.BioSeq.DBSeq.data=BioSQL.BioSeq.DBSeq-class.html#data"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-2', 'data', 'link-2');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a"</tt><tt class="py-op">,</tt> <tt class="py-string">"a"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"ab"</tt><tt class="py-op">,</tt> <tt class="py-string">"ab"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a|b"</tt><tt class="py-op">,</tt> <tt class="py-string">"[ab]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[ab]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[ab]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a|b|c|d"</tt><tt class="py-op">,</tt> <tt class="py-string">"[a-d]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"ab|bc"</tt><tt class="py-op">,</tt> <tt class="py-string">"ab|bc"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a*"</tt><tt class="py-op">,</tt> <tt class="py-string">"a*"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a+"</tt><tt class="py-op">,</tt> <tt class="py-string">"a+"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a?"</tt><tt class="py-op">,</tt> <tt class="py-string">"a?"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a{3}"</tt><tt class="py-op">,</tt> <tt class="py-string">"a{3}"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a{3,8}"</tt><tt class="py-op">,</tt> <tt class="py-string">"a{3,8}"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a{3,3}"</tt><tt class="py-op">,</tt> <tt class="py-string">"a{3}"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"(?:test1)"</tt><tt class="py-op">,</tt> <tt class="py-string">"(test1)"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"(?P<foo>test1)"</tt><tt class="py-op">,</tt> <tt class="py-string">"(?P<foo>test1)"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"."</tt><tt class="py-op">,</tt> <tt class="py-string">"."</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"((?P<x>..?)|(?P<y>..*))"</tt><tt class="py-op">,</tt> <tt class="py-string">"((?P<x>..?)|(?P<y>..*))"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\w"</tt><tt class="py-op">,</tt> <tt class="py-string">"[\\dA-Z_a-z]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\s"</tt><tt class="py-op">,</tt> <tt class="py-string">"[\\t-\\r ]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\\d"</tt><tt class="py-op">,</tt> <tt class="py-string">"[\\d]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[0123456789]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[\\d]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"(0|1|2|3|4|5|6|7|8|9)"</tt><tt class="py-op">,</tt> <tt class="py-string">"([\\d])"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">r"This is (?!not\.)nothing\."</tt><tt class="py-op">,</tt> <tt class="py-string">r"This is (?!not\.)nothing\."</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">r"This is (?=not\.)nothing\."</tt><tt class="py-op">,</tt> <tt class="py-string">r"This is (?=not\.)nothing\."</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"^start"</tt><tt class="py-op">,</tt> <tt class="py-string">"^start"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"not^start"</tt><tt class="py-op">,</tt> <tt class="py-string">"not^start"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"end$"</tt><tt class="py-op">,</tt> <tt class="py-string">"end$"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"end$not"</tt><tt class="py-op">,</tt> <tt class="py-string">"end$not"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[a-z]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[a-z]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[^a-z]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[^a-z]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[^b]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[^b]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[a-zA-Z]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[A-Za-z]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[ababab]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[ab]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a{foo,bar}"</tt><tt class="py-op">,</tt> <tt class="py-string">"a{foo,bar}"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"a{foo,foo}"</tt><tt class="py-op">,</tt> <tt class="py-string">"a{foo}"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[\\]]"</tt><tt class="py-op">,</tt> <tt class="py-string">"\\]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment"># it special cases a single character in []s</tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"[A\\]]"</tt><tt class="py-op">,</tt> <tt class="py-string">"[A\\]]"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">input</tt><tt class="py-op">,</tt> <tt class="py-name">output</tt> <tt class="py-keyword">in</tt> <tt id="link-3" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-3', 'data', 'link-2');">data</a></tt><tt class="py-op">:</tt> </tt>
<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-name">result</tt> <tt class="py-op">=</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt><tt id="link-4" class="py-name" targets="Function Martel.Time.make_expression()=Martel.Time-module.html#make_expression,Function Martel.convert_re.make_expression()=Martel.convert_re-module.html#make_expression"><a title="Martel.Time.make_expression
Martel.convert_re.make_expression" class="py-name" href="#" onclick="return doclink('link-4', 'make_expression', 'link-4');">make_expression</a></tt><tt class="py-op">(</tt><tt class="py-name">input</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">result</tt> <tt class="py-op">==</tt> <tt class="py-name">output</tt><tt class="py-op">,</tt> <tt class="py-string">"input %s : expected %s but got %s"</tt> <tt class="py-op">%</tt> \ </tt>
<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">input</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">output</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">result</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> </tt>
<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt id="link-5" class="py-name" targets="Function Bio.Decode.test()=Bio.Decode-module.html#test,Function Bio.EUtils.ReseekFile.test()=Bio.EUtils.ReseekFile-module.html#test,Package Martel.test=Martel.test-module.html,Method Martel.test.support.Storage.test()=Martel.test.support.Storage-class.html#test,Function Martel.test.test()=Martel.test-module.html#test,Function Martel.test.test_Expression.test()=Martel.test.test_Expression-module.html#test,Function Martel.test.test_Generate.test()=Martel.test.test_Generate-module.html#test,Function Martel.test.test_IterParser.test()=Martel.test.test_IterParser-module.html#test,Function Martel.test.test_Iterator.test()=Martel.test.test_Iterator-module.html#test,Function Martel.test.test_LAX.test()=Martel.test.test_LAX-module.html#test,Function Martel.test.test_ParseRecords.test()=Martel.test.test_ParseRecords-module.html#test,Function Martel.test.test_Parser.test()=Martel.test.test_Parser-module.html#test,Function Martel.test.test_RecordReader.test()=Martel.test.test_RecordReader-module.html#test,Function Martel.test.test_RecordReader2.test()=Martel.test.test_RecordReader2-module.html#test,Function Martel.test.test_Time.test()=Martel.test.test_Time-module.html#test,Function Martel.test.test_attrs.test()=Martel.test.test_attrs-module.html#test,Function Martel.test.test_convert_re.test()=Martel.test.test_convert_re-module.html#test,Function Martel.test.test_delimiter.test()=Martel.test.test_delimiter-module.html#test,Function Martel.test.test_macros.test()=Martel.test.test_macros-module.html#test,Function Martel.test.test_optimize.test()=Martel.test.test_optimize-module.html#test,Function Martel.test.test_swissprot38.test()=Martel.test.test_swissprot38-module.html#test"><a title="Bio.Decode.test
Bio.EUtils.ReseekFile.test
Martel.test
Martel.test.support.Storage.test
Martel.test.test
Martel.test.test_Expression.test
Martel.test.test_Generate.test
Martel.test.test_IterParser.test
Martel.test.test_Iterator.test
Martel.test.test_LAX.test
Martel.test.test_ParseRecords.test
Martel.test.test_Parser.test
Martel.test.test_RecordReader.test
Martel.test.test_RecordReader2.test
Martel.test.test_Time.test
Martel.test.test_attrs.test
Martel.test.test_convert_re.test
Martel.test.test_delimiter.test
Martel.test.test_macros.test
Martel.test.test_optimize.test
Martel.test.test_swissprot38.test" class="py-name" href="#" onclick="return doclink('link-5', 'test', 'link-5');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> </tt><script type="text/javascript">
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