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<a href="Martel-module.html">Package Martel</a> ::
<a href="Martel.test-module.html">Package test</a> ::
Module test_IterParser
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<h1 class="epydoc">Source Code for <a href="Martel.test.test_IterParser-module.html">Module Martel.test.test_IterParser</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-1', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module Martel.IterParser=Martel.IterParser-module.html"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-2', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">,</tt> <tt id="link-3" class="py-name" targets="Module Martel.RecordReader=Martel.RecordReader-module.html,Class Martel.RecordReader.RecordReader=Martel.RecordReader.RecordReader-class.html"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-3', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">,</tt> <tt id="link-4" class="py-name" targets="Module Martel.LAX=Martel.LAX-module.html,Class Martel.LAX.LAX=Martel.LAX.LAX-class.html"><a title="Martel.LAX
Martel.LAX.LAX" class="py-name" href="#" onclick="return doclink('link-4', 'LAX', 'link-4');">LAX</a></tt><tt class="py-op">,</tt> <tt id="link-5" class="py-name" targets="Module Bio.AlignAce.Parser=Bio.AlignAce.Parser-module.html,Module Bio.Entrez.Parser=Bio.Entrez.Parser-module.html,Module Bio.MEME.Parser=Bio.MEME.Parser-module.html,Class Bio.SCOP.Cla.Parser=Bio.SCOP.Cla.Parser-class.html,Class Bio.SCOP.Des.Parser=Bio.SCOP.Des.Parser-class.html,Class Bio.SCOP.Dom.Parser=Bio.SCOP.Dom.Parser-class.html,Class Bio.SCOP.Hie.Parser=Bio.SCOP.Hie.Parser-class.html,Class Bio.SCOP.Raf.Parser=Bio.SCOP.Raf.Parser-class.html,Module Martel.Parser=Martel.Parser-module.html,Class Martel.Parser.Parser=Martel.Parser.Parser-class.html"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-5', 'Parser', 'link-5');">Parser</a></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"># Used a lot</tt> </tt>
<a name="gen_iterator"></a><div id="gen_iterator-def"><a name="L5"></a><tt class="py-lineno"> 5</tt> <a class="py-toggle" href="#" id="gen_iterator-toggle" onclick="return toggle('gen_iterator');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#gen_iterator">gen_iterator</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="gen_iterator-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="gen_iterator-expanded"><a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-6" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-6', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Class Martel.IterParser.IterHeaderFooter=Martel.IterParser.IterHeaderFooter-class.html"><a title="Martel.IterParser.IterHeaderFooter" class="py-name" href="#" onclick="return doclink('link-7', 'IterHeaderFooter', 'link-7');">IterHeaderFooter</a></tt><tt class="py-op">(</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt id="link-8" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-8', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Function Martel.Re()=Martel-module.html#Re"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-9', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"a*\R"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Method Bio.config.FormatRegistry.FormatObject.make_parser()=Bio.config.FormatRegistry.FormatObject-class.html#make_parser,Method Bio.config._support.make_cached_expression.make_parser()=Bio.config._support.make_cached_expression-class.html#make_parser,Method Martel.Expression.Expression.make_parser()=Martel.Expression.Expression-class.html#make_parser,Method Martel.Expression.HeaderFooter.make_parser()=Martel.Expression.HeaderFooter-class.html#make_parser,Method Martel.Expression.ParseRecords.make_parser()=Martel.Expression.ParseRecords-class.html#make_parser"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-10', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt id="link-11" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-11', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Class Martel.RecordReader.CountLines=Martel.RecordReader.CountLines-class.html"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-12', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-13', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-14', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-15" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-15', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-16', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-17', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-name">debug_level</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"> <tt id="link-18" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-18', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-19', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> <tt id="link-20" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-20', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-21', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"d*\R"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-22', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> <tt id="link-23" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-23', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-24', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
<a name="test_hf1"></a><div id="test_hf1-def"><a name="L21"></a><tt class="py-lineno"> 21</tt> <a class="py-toggle" href="#" id="test_hf1-toggle" onclick="return toggle('test_hf1');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf1">test_hf1</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf1-expanded"><a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name" targets="Function Martel.test.test_IterParser.gen_iterator()=Martel.test.test_IterParser-module.html#gen_iterator"><a title="Martel.test.test_IterParser.gen_iterator" class="py-name" href="#" onclick="return doclink('link-25', 'gen_iterator', 'link-25');">gen_iterator</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-string">"d"</tt><tt class="py-op">]</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt id="link-26" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.text()=Bio.EUtils.POM.ElementNode-class.html#text,Method Bio.Prosite.Prodoc._RecordConsumer.text()=Bio.Prosite.Prodoc._RecordConsumer-class.html#text,Variable Martel.test.test_Iterator.text=Martel.test.test_Iterator-module.html#text,Variable Martel.test.test_ParseRecords.text=Martel.test.test_ParseRecords-module.html#text"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-26', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt id="link-27" class="py-name" targets="Variable Bio.PDB.Polypeptide.i=Bio.PDB.Polypeptide-module.html#i"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-27', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-28" class="py-name" targets="Variable Bio.MarkovModel.x=Bio.MarkovModel-module.html#x,Variable Bio.Statistics.lowess.x=Bio.Statistics.lowess-module.html#x"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-28', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method Martel.IterParser.IterHeaderFooter.iterateString()=Martel.IterParser.IterHeaderFooter-class.html#iterateString,Method Martel.IterParser.IterRecords.iterateString()=Martel.IterParser.IterRecords-class.html#iterateString,Method Martel.Iterator.Iterator.iterateString()=Martel.Iterator.Iterator-class.html#iterateString,Method Martel.Iterator.IteratorHeaderFooter.iterateString()=Martel.Iterator.IteratorHeaderFooter-class.html#iterateString,Method Martel.Iterator.IteratorRecords.iterateString()=Martel.Iterator.IteratorRecords-class.html#iterateString"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-29', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-30" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-30', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-31" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-31', 'x', 'link-28');">x</a></tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"b"</tt> <tt class="py-op">*</tt> <tt id="link-32" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-32', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> <tt class="py-op">+</tt> <tt class="py-string">"c"</tt> <tt class="py-op">*</tt> <tt id="link-33" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-33', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-34', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-35" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-35', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
<a name="test_hf2"></a><div id="test_hf2-def"><a name="L40"></a><tt class="py-lineno"> 40</tt> <a class="py-toggle" href="#" id="test_hf2-toggle" onclick="return toggle('test_hf2');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf2">test_hf2</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf2-expanded"><a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-36" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-36', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="Martel.IterParser.IterHeaderFooter" class="py-name" href="#" onclick="return doclink('link-37', 'IterHeaderFooter', 'link-7');">IterHeaderFooter</a></tt><tt class="py-op">(</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-38', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-39', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-40" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-40', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-41', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-42', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-43', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-44', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt id="link-45" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-45', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-46', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"d*\R"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-47', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt id="link-48" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-48', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-49', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-string">"d"</tt><tt class="py-op">]</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt id="link-50" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-50', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt id="link-51" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-51', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-52" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-52', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-53', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-54" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-54', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-55" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-55', 'x', 'link-28');">x</a></tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"b"</tt> <tt class="py-op">*</tt> <tt id="link-56" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-56', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> <tt class="py-op">+</tt> <tt class="py-string">"c"</tt> <tt class="py-op">*</tt> <tt id="link-57" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-57', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt id="link-58" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-58', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-59" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-59', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
<a name="test_hf3"></a><div id="test_hf3-def"><a name="L70"></a><tt class="py-lineno"> 70</tt> <a class="py-toggle" href="#" id="test_hf3-toggle" onclick="return toggle('test_hf3');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf3">test_hf3</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf3-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf3-expanded"><a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-60" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-60', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="Martel.IterParser.IterHeaderFooter" class="py-name" href="#" onclick="return doclink('link-61', 'IterHeaderFooter', 'link-7');">IterHeaderFooter</a></tt><tt class="py-op">(</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-62', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-63', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-64" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-64', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-65', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-66', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt id="link-67" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-67', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-68', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt id="link-69" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-69', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt id="link-70" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-70', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-71" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-71', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-72', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-73" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-73', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-74" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-74', 'x', 'link-28');">x</a></tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"b"</tt> <tt class="py-op">*</tt> <tt id="link-75" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-75', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> <tt class="py-op">+</tt> <tt class="py-string">"c"</tt> <tt class="py-op">*</tt> <tt id="link-76" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-76', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt id="link-77" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-77', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-78" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-78', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
<a name="test_hf4"></a><div id="test_hf4-def"><a name="L100"></a><tt class="py-lineno">100</tt> <a class="py-toggle" href="#" id="test_hf4-toggle" onclick="return toggle('test_hf4');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf4">test_hf4</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf4-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf4-expanded"><a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-79" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-79', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="Martel.IterParser.IterHeaderFooter" class="py-name" href="#" onclick="return doclink('link-80', 'IterHeaderFooter', 'link-7');">IterHeaderFooter</a></tt><tt class="py-op">(</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt id="link-81" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-81', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-82', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"a*\R"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-83', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt id="link-84" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-84', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-85', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt id="link-86" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-86', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-87', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-88" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-88', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-89', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-90', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-91" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-91', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-92', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-93" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-93', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-94" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-94', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-95" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-95', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-96', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-97', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-98" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-98', 'x', 'link-28');">x</a></tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"b"</tt> <tt class="py-op">*</tt> <tt id="link-99" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-99', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> <tt class="py-op">+</tt> <tt class="py-string">"c"</tt> <tt class="py-op">*</tt> <tt id="link-100" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-100', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt id="link-101" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-101', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-102" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-102', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> </tt>
<a name="test_hf5"></a><div id="test_hf5-def"><a name="L132"></a><tt class="py-lineno">132</tt> <a class="py-toggle" href="#" id="test_hf5-toggle" onclick="return toggle('test_hf5');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf5">test_hf5</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf5-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf5-expanded"><a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-comment"># This has a syntax error in the header</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-103" class="py-name"><a title="Martel.test.test_IterParser.gen_iterator" class="py-name" href="#" onclick="return doclink('link-103', 'gen_iterator', 'link-25');">gen_iterator</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaAaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-string">"d"</tt><tt class="py-op">]</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt id="link-104" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-104', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-105" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-105', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-106', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-107" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-107', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-108" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-108', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-109" class="py-name" targets="Class Martel.Parser.ParserPositionException=Martel.Parser.ParserPositionException-class.html"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-109', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt> </tt>
</div><a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> </tt>
<a name="test_hf6"></a><div id="test_hf6-def"><a name="L153"></a><tt class="py-lineno">153</tt> <a class="py-toggle" href="#" id="test_hf6-toggle" onclick="return toggle('test_hf6');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf6">test_hf6</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf6-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf6-expanded"><a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-comment"># This has a syntax error in the first line of the first record</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-110" class="py-name"><a title="Martel.test.test_IterParser.gen_iterator" class="py-name" href="#" onclick="return doclink('link-110', 'gen_iterator', 'link-25');">gen_iterator</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-string">"-"</tt><tt class="py-op">,</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-string">"d"</tt><tt class="py-op">]</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt id="link-111" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-111', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-112" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-112', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-113', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-114" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-114', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-115" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-115', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-116', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">10</tt> </tt>
</div><a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
<a name="test_hf7"></a><div id="test_hf7-def"><a name="L174"></a><tt class="py-lineno">174</tt> <a class="py-toggle" href="#" id="test_hf7-toggle" onclick="return toggle('test_hf7');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf7">test_hf7</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf7-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf7-expanded"><a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-comment"># This has a syntax error in the first line of the second record</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-117" class="py-name"><a title="Martel.test.test_IterParser.gen_iterator" class="py-name" href="#" onclick="return doclink('link-117', 'gen_iterator', 'link-25');">gen_iterator</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-string">"b-"</tt><tt class="py-op">,</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-string">"d"</tt><tt class="py-op">]</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt id="link-118" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-118', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-119" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-119', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-120', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-121" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-121', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-122" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-122', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-123', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">14</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> </tt>
<a name="test_hf8"></a><div id="test_hf8-def"><a name="L195"></a><tt class="py-lineno">195</tt> <a class="py-toggle" href="#" id="test_hf8-toggle" onclick="return toggle('test_hf8');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_hf8">test_hf8</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_hf8-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_hf8-expanded"><a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-comment"># This has a syntax error in the footer</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-124" class="py-name"><a title="Martel.test.test_IterParser.gen_iterator" class="py-name" href="#" onclick="return doclink('link-124', 'gen_iterator', 'link-25');">gen_iterator</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"aaaaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-string">"d-"</tt><tt class="py-op">]</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt id="link-125" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-125', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-126" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-126', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-127" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-127', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-128" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-128', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-129" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-129', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-130', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">29</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"><tt class="py-comment">### the simple record iterator</tt> </tt>
<a name="test_ri1"></a><div id="test_ri1-def"><a name="L218"></a><tt class="py-lineno">218</tt> <a class="py-toggle" href="#" id="test_ri1-toggle" onclick="return toggle('test_ri1');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_ri1">test_ri1</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_ri1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_ri1-expanded"><a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-131" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-131', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-132" class="py-name" targets="Class Martel.IterParser.IterRecords=Martel.IterParser.IterRecords-class.html"><a title="Martel.IterParser.IterRecords" class="py-name" href="#" onclick="return doclink('link-132', 'IterRecords', 'link-132');">IterRecords</a></tt><tt class="py-op">(</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt id="link-133" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-133', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-134', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-135" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-135', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-136', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-137" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-137', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt id="link-138" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-138', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-139" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-139', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt id="link-140" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-140', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt id="link-141" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-141', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-142" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-142', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-143" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-143', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-144" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-144', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-145" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-145', 'x', 'link-28');">x</a></tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"b"</tt> <tt class="py-op">*</tt> <tt id="link-146" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-146', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> <tt class="py-op">+</tt> <tt class="py-string">"c"</tt> <tt class="py-op">*</tt> <tt id="link-147" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-147', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt id="link-148" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-148', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-149" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-149', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> </tt>
<a name="test_ri2"></a><div id="test_ri2-def"><a name="L240"></a><tt class="py-lineno">240</tt> <a class="py-toggle" href="#" id="test_ri2-toggle" onclick="return toggle('test_ri2');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_ri2">test_ri2</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_ri2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_ri2-expanded"><a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-comment"># error in the first record</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-150" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-150', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-151" class="py-name"><a title="Martel.IterParser.IterRecords" class="py-name" href="#" onclick="return doclink('link-151', 'IterRecords', 'link-132');">IterRecords</a></tt><tt class="py-op">(</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt id="link-152" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-152', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-153', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-154" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-154', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-155', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-156', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-name">debug_level</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt id="link-157" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-157', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-158" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-158', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-string">"-"</tt><tt class="py-op">,</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt id="link-159" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-159', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-160" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-160', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-161', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-162" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-162', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-163" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-163', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-164" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-164', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> </tt>
<a name="test_ri3"></a><div id="test_ri3-def"><a name="L263"></a><tt class="py-lineno">263</tt> <a class="py-toggle" href="#" id="test_ri3-toggle" onclick="return toggle('test_ri3');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_ri3">test_ri3</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_ri3-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_ri3-expanded"><a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-comment"># error in the second record</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">ip</tt> <tt class="py-op">=</tt> <tt id="link-165" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-165', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-166" class="py-name"><a title="Martel.IterParser.IterRecords" class="py-name" href="#" onclick="return doclink('link-166', 'IterRecords', 'link-132');">IterRecords</a></tt><tt class="py-op">(</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt id="link-167" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-167', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-168', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-169" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-169', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-170', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"b*\Rc*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-171', 'make_parser', 'link-10');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-name">debug_level</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt id="link-172" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-172', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-173', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-string">"b-"</tt><tt class="py-op">,</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-string">"ccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt id="link-174" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-174', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-175" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-175', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ip</tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-176', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-177" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-177', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-178" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-178', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-179', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">5</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> </tt>
<a name="test_make_iterparsers1"></a><div id="test_make_iterparsers1-def"><a name="L286"></a><tt class="py-lineno">286</tt> <a class="py-toggle" href="#" id="test_make_iterparsers1-toggle" onclick="return toggle('test_make_iterparsers1');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_make_iterparsers1">test_make_iterparsers1</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_make_iterparsers1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_make_iterparsers1-expanded"><a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt id="link-180" class="py-name" targets="Variable Bio.Affy.CelFile.exp=Bio.Affy.CelFile-module.html#exp,Variable Bio.LogisticRegression.exp=Bio.LogisticRegression-module.html#exp,Variable Bio.MarkovModel.exp=Bio.MarkovModel-module.html#exp,Variable Bio.MaxEntropy.exp=Bio.MaxEntropy-module.html#exp,Variable Bio.NaiveBayes.exp=Bio.NaiveBayes-module.html#exp,Variable Bio.Statistics.lowess.exp=Bio.Statistics.lowess-module.html#exp,Variable Bio.distance.exp=Bio.distance-module.html#exp,Variable Bio.kNN.exp=Bio.kNN-module.html#exp"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-180', 'exp', 'link-180');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-181" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-181', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-182" class="py-name" targets="Class Martel.Expression.ParseRecords=Martel.Expression.ParseRecords-class.html"><a title="Martel.Expression.ParseRecords" class="py-name" href="#" onclick="return doclink('link-182', 'ParseRecords', 'link-182');">ParseRecords</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt id="link-183" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-183', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-184', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">,</tt> <tt id="link-185" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-185', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-186" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-186', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"a*\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt id="link-187" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-187', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-188', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-name">iterator</tt> <tt class="py-op">=</tt> <tt id="link-189" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-189', 'exp', 'link-180');">exp</a></tt><tt class="py-op">.</tt><tt id="link-190" class="py-name" targets="Method Bio.config.FormatRegistry.FormatObject.make_iterator()=Bio.config.FormatRegistry.FormatObject-class.html#make_iterator,Method Martel.Expression.Expression.make_iterator()=Martel.Expression.Expression-class.html#make_iterator,Method Martel.Expression.HeaderFooter.make_iterator()=Martel.Expression.HeaderFooter-class.html#make_iterator,Method Martel.Expression.ParseRecords.make_iterator()=Martel.Expression.ParseRecords-class.html#make_iterator"><a title="Bio.config.FormatRegistry.FormatObject.make_iterator
Martel.Expression.Expression.make_iterator
Martel.Expression.HeaderFooter.make_iterator
Martel.Expression.ParseRecords.make_iterator" class="py-name" href="#" onclick="return doclink('link-190', 'make_iterator', 'link-190');">make_iterator</a></tt><tt class="py-op">(</tt><tt class="py-string">"spam"</tt><tt class="py-op">)</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">iterator</tt><tt class="py-op">,</tt> <tt id="link-191" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-191', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="Martel.IterParser.IterRecords" class="py-name" href="#" onclick="return doclink('link-192', 'IterRecords', 'link-132');">IterRecords</a></tt><tt class="py-op">)</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-193" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-193', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">10</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">lines</tt><tt class="py-op">.</tt><tt id="link-194" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-194', 'append', 'link-194');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">"a"</tt> <tt class="py-op">*</tt> <tt id="link-195" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-195', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt><tt class="py-op">)</tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt id="link-196" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-196', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> </tt>
<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt id="link-197" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-197', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">rec</tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-198" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-198', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-199" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-199', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">rec</tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-200" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-200', 'i', 'link-27');">i</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt id="link-201" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-201', 'i', 'link-27');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">rec</tt><tt class="py-op">[</tt><tt class="py-string">"spam"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt id="link-202" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-202', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-203" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-203', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-204" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-204', 'i', 'link-27');">i</a></tt> <tt class="py-op">==</tt> <tt class="py-number">10</tt> </tt>
</div><a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> </tt>
<a name="test_make_iterparsers2"></a><div id="test_make_iterparsers2-def"><a name="L304"></a><tt class="py-lineno">304</tt> <a class="py-toggle" href="#" id="test_make_iterparsers2-toggle" onclick="return toggle('test_make_iterparsers2');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_make_iterparsers2">test_make_iterparsers2</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_make_iterparsers2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_make_iterparsers2-expanded"><a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt id="link-205" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-205', 'exp', 'link-180');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-206" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-206', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-207" class="py-name" targets="Class Martel.Expression.HeaderFooter=Martel.Expression.HeaderFooter-class.html"><a title="Martel.Expression.HeaderFooter" class="py-name" href="#" onclick="return doclink('link-207', 'HeaderFooter', 'link-207');">HeaderFooter</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt id="link-208" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-208', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-209', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"header"</tt><tt class="py-op">,</tt> <tt id="link-210" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-210', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-211" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-211', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(a*\R)*"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt id="link-212" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-212', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-213" class="py-name" targets="Class Martel.RecordReader.Until=Martel.RecordReader.Until-class.html"><a title="Martel.RecordReader.Until" class="py-name" href="#" onclick="return doclink('link-213', 'Until', 'link-213');">Until</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt id="link-214" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-214', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-215', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">,</tt> <tt id="link-216" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-216', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-217" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-217', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(b*\R)*"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt id="link-218" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-218', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-219" class="py-name"><a title="Martel.RecordReader.Until" class="py-name" href="#" onclick="return doclink('link-219', 'Until', 'link-213');">Until</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"c"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt id="link-220" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-220', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-221', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"footer"</tt><tt class="py-op">,</tt> <tt id="link-222" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-222', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-223" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-223', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(c*\R)*"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt id="link-224" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-224', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-225" class="py-name" targets="Class Martel.RecordReader.Everything=Martel.RecordReader.Everything-class.html"><a title="Martel.RecordReader.Everything" class="py-name" href="#" onclick="return doclink('link-225', 'Everything', 'link-225');">Everything</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-name">iterator</tt> <tt class="py-op">=</tt> <tt id="link-226" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-226', 'exp', 'link-180');">exp</a></tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_iterator
Martel.Expression.Expression.make_iterator
Martel.Expression.HeaderFooter.make_iterator
Martel.Expression.ParseRecords.make_iterator" class="py-name" href="#" onclick="return doclink('link-227', 'make_iterator', 'link-190');">make_iterator</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">)</tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">iterator</tt><tt class="py-op">,</tt> <tt id="link-228" class="py-name"><a title="Martel.IterParser" class="py-name" href="#" onclick="return doclink('link-228', 'IterParser', 'link-2');">IterParser</a></tt><tt class="py-op">.</tt><tt id="link-229" class="py-name"><a title="Martel.IterParser.IterHeaderFooter" class="py-name" href="#" onclick="return doclink('link-229', 'IterHeaderFooter', 'link-7');">IterHeaderFooter</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">iterator</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"a"</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-string">"aa"</tt><tt class="py-op">,</tt> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-string">"aaaaaaa"</tt><tt class="py-op">,</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt class="py-string">"bbbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt class="py-string">"bbbbbbbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt class="py-string">"bbbbbbbbbbbbbbbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt class="py-string">"bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-string">"cccc"</tt><tt class="py-op">,</tt> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-string">"cc"</tt><tt class="py-op">,</tt> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt id="link-230" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-230', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt id="link-231" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-231', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">rec</tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-232', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-233" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-233', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt id="link-234" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-234', 'i', 'link-27');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-235" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-235', 'i', 'link-27');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-236" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-236', 'i', 'link-27');">i</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt id="link-237" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-237', 'i', 'link-27');">i</a></tt> </tt>
</div><a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> </tt>
<a name="test_missing_end1"></a><div id="test_missing_end1-def"><a name="L338"></a><tt class="py-lineno">338</tt> <a class="py-toggle" href="#" id="test_missing_end1-toggle" onclick="return toggle('test_missing_end1');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_missing_end1">test_missing_end1</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_missing_end1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_missing_end1-expanded"><a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt id="link-238" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-238', 'exp', 'link-180');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-239" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-239', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-240" class="py-name"><a title="Martel.Expression.ParseRecords" class="py-name" href="#" onclick="return doclink('link-240', 'ParseRecords', 'link-182');">ParseRecords</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt id="link-241" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-241', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-242', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">,</tt> <tt id="link-243" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-243', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-244" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-244', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(b*\R)*a\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt id="link-245" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-245', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-246" class="py-name" targets="Class Martel.RecordReader.EndsWith=Martel.RecordReader.EndsWith-class.html"><a title="Martel.RecordReader.EndsWith" class="py-name" href="#" onclick="return doclink('link-246', 'EndsWith', 'link-246');">EndsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"a"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt id="link-247" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-247', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-name">iterator</tt> <tt class="py-op">=</tt> <tt id="link-248" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-248', 'exp', 'link-180');">exp</a></tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_iterator
Martel.Expression.Expression.make_iterator
Martel.Expression.HeaderFooter.make_iterator
Martel.Expression.ParseRecords.make_iterator" class="py-name" href="#" onclick="return doclink('link-249', 'make_iterator', 'link-190');">make_iterator</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">)</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-comment"># This should work</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt id="link-250" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-250', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-251" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-251', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-252" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-252', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> </tt>
<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt class="py-comment"># This should not</tt> </tt>
<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">lines</tt><tt class="py-op">.</tt><tt id="link-253" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-253', 'append', 'link-194');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">"c"</tt><tt class="py-op">)</tt> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt id="link-254" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-254', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-255" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-255', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-256" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-256', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-257" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-257', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt> </tt>
<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-258" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-258', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-259" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-259', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">15</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> </tt>
<a name="test_missing_end2"></a><div id="test_missing_end2-def"><a name="L367"></a><tt class="py-lineno">367</tt> <a class="py-toggle" href="#" id="test_missing_end2-toggle" onclick="return toggle('test_missing_end2');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_missing_end2">test_missing_end2</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_missing_end2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_missing_end2-expanded"><a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt class="py-comment"># Same as the test_missing_end1 but using HeaderFooter</tt> </tt>
<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-260" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-260', 'exp', 'link-180');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-261" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-261', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-262" class="py-name"><a title="Martel.Expression.HeaderFooter" class="py-name" href="#" onclick="return doclink('link-262', 'HeaderFooter', 'link-207');">HeaderFooter</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt id="link-263" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-263', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-264" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-264', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">,</tt> <tt id="link-265" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-265', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-266" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-266', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(b*\R)*a\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt id="link-267" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-267', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-268" class="py-name"><a title="Martel.RecordReader.EndsWith" class="py-name" href="#" onclick="return doclink('link-268', 'EndsWith', 'link-246');">EndsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"a"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt id="link-269" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-269', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-name">iterator</tt> <tt class="py-op">=</tt> <tt id="link-270" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-270', 'exp', 'link-180');">exp</a></tt><tt class="py-op">.</tt><tt id="link-271" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_iterator
Martel.Expression.Expression.make_iterator
Martel.Expression.HeaderFooter.make_iterator
Martel.Expression.ParseRecords.make_iterator" class="py-name" href="#" onclick="return doclink('link-271', 'make_iterator', 'link-190');">make_iterator</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">)</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-comment"># This should work</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt id="link-272" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-272', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-273" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-273', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-274" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-274', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt class="py-comment"># This should not</tt> </tt>
<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">lines</tt><tt class="py-op">.</tt><tt id="link-275" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-275', 'append', 'link-194');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">"c"</tt><tt class="py-op">)</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt id="link-276" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-276', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-277" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-277', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-278', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-279" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-279', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-280" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-280', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-281" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-281', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">15</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> </tt>
<a name="test_missing_end3"></a><div id="test_missing_end3-def"><a name="L400"></a><tt class="py-lineno">400</tt> <a class="py-toggle" href="#" id="test_missing_end3-toggle" onclick="return toggle('test_missing_end3');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test_missing_end3">test_missing_end3</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test_missing_end3-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test_missing_end3-expanded"><a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-comment"># This one is missing the footer</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-282" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-282', 'exp', 'link-180');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-283" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-283', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-284" class="py-name"><a title="Martel.Expression.HeaderFooter" class="py-name" href="#" onclick="return doclink('link-284', 'HeaderFooter', 'link-207');">HeaderFooter</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> <tt id="link-285" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-285', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-286" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-286', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">,</tt> <tt id="link-287" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-287', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-288" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-288', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(b*\R)*a\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt id="link-289" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-289', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-290" class="py-name"><a title="Martel.RecordReader.EndsWith" class="py-name" href="#" onclick="return doclink('link-290', 'EndsWith', 'link-246');">EndsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"a"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt id="link-291" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-291', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-292" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-292', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"footer"</tt><tt class="py-op">,</tt> <tt id="link-293" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-293', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-294" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-294', 'Re', 'link-9');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"c\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt id="link-295" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-295', 'RecordReader', 'link-3');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-296" class="py-name"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-296', 'CountLines', 'link-12');">CountLines</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> </tt>
<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> <tt class="py-string">"bbb"</tt><tt class="py-op">,</tt> </tt>
<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> <tt class="py-string">"bb"</tt><tt class="py-op">,</tt> </tt>
<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> <tt class="py-string">"b"</tt><tt class="py-op">,</tt> </tt>
<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-string">"a"</tt><tt class="py-op">,</tt> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> <tt class="py-comment"># This will be removed for the test</tt> </tt>
<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt id="link-297" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-297', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> </tt>
<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt class="py-name">iterator</tt> <tt class="py-op">=</tt> <tt id="link-298" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-298', 'exp', 'link-180');">exp</a></tt><tt class="py-op">.</tt><tt id="link-299" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject.make_iterator
Martel.Expression.Expression.make_iterator
Martel.Expression.HeaderFooter.make_iterator
Martel.Expression.ParseRecords.make_iterator" class="py-name" href="#" onclick="return doclink('link-299', 'make_iterator', 'link-190');">make_iterator</a></tt><tt class="py-op">(</tt><tt class="py-string">"record"</tt><tt class="py-op">)</tt> </tt>
<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-comment"># This should work</tt> </tt>
<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt id="link-300" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-300', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-301" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-301', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-302" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-302', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> </tt>
<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-comment"># This should not</tt> </tt>
<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">lines</tt><tt class="py-op">.</tt><tt id="link-303" class="py-name" targets="Method Bio.Seq.MutableSeq.pop()=Bio.Seq.MutableSeq-class.html#pop"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-303', 'pop', 'link-303');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt id="link-304" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-304', 'text', 'link-26');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-305" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-305', 'x', 'link-28');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">iterator</tt><tt class="py-op">.</tt><tt id="link-306" class="py-name"><a title="Martel.IterParser.IterHeaderFooter.iterateString
Martel.IterParser.IterRecords.iterateString
Martel.Iterator.Iterator.iterateString
Martel.Iterator.IteratorHeaderFooter.iterateString
Martel.Iterator.IteratorRecords.iterateString" class="py-name" href="#" onclick="return doclink('link-306', 'iterateString', 'link-29');">iterateString</a></tt><tt class="py-op">(</tt><tt id="link-307" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-307', 'text', 'link-26');">text</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">AssertionError</tt> </tt>
<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt id="link-308" class="py-name"><a title="Bio.AlignAce.Parser
Bio.Entrez.Parser
Bio.MEME.Parser
Bio.SCOP.Cla.Parser
Bio.SCOP.Des.Parser
Bio.SCOP.Dom.Parser
Bio.SCOP.Hie.Parser
Bio.SCOP.Raf.Parser
Martel.Parser
Martel.Parser.Parser" class="py-name" href="#" onclick="return doclink('link-308', 'Parser', 'link-5');">Parser</a></tt><tt class="py-op">.</tt><tt id="link-309" class="py-name"><a title="Martel.Parser.ParserPositionException" class="py-name" href="#" onclick="return doclink('link-309', 'ParserPositionException', 'link-109');">ParserPositionException</a></tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">:</tt> </tt>
<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> <tt class="py-op">==</tt> <tt class="py-number">15</tt><tt class="py-op">,</tt> <tt class="py-name">exc</tt><tt class="py-op">.</tt><tt class="py-name">pos</tt> </tt>
</div><a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> </tt>
<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> </tt>
<a name="test"></a><div id="test-def"><a name="L438"></a><tt class="py-lineno">438</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Martel.test.test_IterParser-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="test-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test-expanded"><a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt id="link-310" class="py-name" targets="Function Martel.test.test_IterParser.test_hf1()=Martel.test.test_IterParser-module.html#test_hf1"><a title="Martel.test.test_IterParser.test_hf1" class="py-name" href="#" onclick="return doclink('link-310', 'test_hf1', 'link-310');">test_hf1</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt id="link-311" class="py-name" targets="Function Martel.test.test_IterParser.test_hf2()=Martel.test.test_IterParser-module.html#test_hf2"><a title="Martel.test.test_IterParser.test_hf2" class="py-name" href="#" onclick="return doclink('link-311', 'test_hf2', 'link-311');">test_hf2</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt id="link-312" class="py-name" targets="Function Martel.test.test_IterParser.test_hf3()=Martel.test.test_IterParser-module.html#test_hf3"><a title="Martel.test.test_IterParser.test_hf3" class="py-name" href="#" onclick="return doclink('link-312', 'test_hf3', 'link-312');">test_hf3</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> <tt id="link-313" class="py-name" targets="Function Martel.test.test_IterParser.test_hf4()=Martel.test.test_IterParser-module.html#test_hf4"><a title="Martel.test.test_IterParser.test_hf4" class="py-name" href="#" onclick="return doclink('link-313', 'test_hf4', 'link-313');">test_hf4</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> <tt id="link-314" class="py-name" targets="Function Martel.test.test_IterParser.test_hf5()=Martel.test.test_IterParser-module.html#test_hf5"><a title="Martel.test.test_IterParser.test_hf5" class="py-name" href="#" onclick="return doclink('link-314', 'test_hf5', 'link-314');">test_hf5</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> <tt id="link-315" class="py-name" targets="Function Martel.test.test_IterParser.test_hf6()=Martel.test.test_IterParser-module.html#test_hf6"><a title="Martel.test.test_IterParser.test_hf6" class="py-name" href="#" onclick="return doclink('link-315', 'test_hf6', 'link-315');">test_hf6</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"> <tt id="link-316" class="py-name" targets="Function Martel.test.test_IterParser.test_hf7()=Martel.test.test_IterParser-module.html#test_hf7"><a title="Martel.test.test_IterParser.test_hf7" class="py-name" href="#" onclick="return doclink('link-316', 'test_hf7', 'link-316');">test_hf7</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"> <tt id="link-317" class="py-name" targets="Function Martel.test.test_IterParser.test_hf8()=Martel.test.test_IterParser-module.html#test_hf8"><a title="Martel.test.test_IterParser.test_hf8" class="py-name" href="#" onclick="return doclink('link-317', 'test_hf8', 'link-317');">test_hf8</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"> </tt>
<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt id="link-318" class="py-name" targets="Function Martel.test.test_IterParser.test_ri1()=Martel.test.test_IterParser-module.html#test_ri1"><a title="Martel.test.test_IterParser.test_ri1" class="py-name" href="#" onclick="return doclink('link-318', 'test_ri1', 'link-318');">test_ri1</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt id="link-319" class="py-name" targets="Function Martel.test.test_IterParser.test_ri2()=Martel.test.test_IterParser-module.html#test_ri2"><a title="Martel.test.test_IterParser.test_ri2" class="py-name" href="#" onclick="return doclink('link-319', 'test_ri2', 'link-319');">test_ri2</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt id="link-320" class="py-name" targets="Function Martel.test.test_IterParser.test_ri3()=Martel.test.test_IterParser-module.html#test_ri3"><a title="Martel.test.test_IterParser.test_ri3" class="py-name" href="#" onclick="return doclink('link-320', 'test_ri3', 'link-320');">test_ri3</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> </tt>
<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt id="link-321" class="py-name" targets="Function Martel.test.test_IterParser.test_make_iterparsers1()=Martel.test.test_IterParser-module.html#test_make_iterparsers1"><a title="Martel.test.test_IterParser.test_make_iterparsers1" class="py-name" href="#" onclick="return doclink('link-321', 'test_make_iterparsers1', 'link-321');">test_make_iterparsers1</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt id="link-322" class="py-name" targets="Function Martel.test.test_IterParser.test_make_iterparsers2()=Martel.test.test_IterParser-module.html#test_make_iterparsers2"><a title="Martel.test.test_IterParser.test_make_iterparsers2" class="py-name" href="#" onclick="return doclink('link-322', 'test_make_iterparsers2', 'link-322');">test_make_iterparsers2</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> </tt>
<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt id="link-323" class="py-name" targets="Function Martel.test.test_IterParser.test_missing_end1()=Martel.test.test_IterParser-module.html#test_missing_end1"><a title="Martel.test.test_IterParser.test_missing_end1" class="py-name" href="#" onclick="return doclink('link-323', 'test_missing_end1', 'link-323');">test_missing_end1</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt id="link-324" class="py-name" targets="Function Martel.test.test_IterParser.test_missing_end2()=Martel.test.test_IterParser-module.html#test_missing_end2"><a title="Martel.test.test_IterParser.test_missing_end2" class="py-name" href="#" onclick="return doclink('link-324', 'test_missing_end2', 'link-324');">test_missing_end2</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> <tt id="link-325" class="py-name" targets="Function Martel.test.test_IterParser.test_missing_end3()=Martel.test.test_IterParser-module.html#test_missing_end3"><a title="Martel.test.test_IterParser.test_missing_end3" class="py-name" href="#" onclick="return doclink('link-325', 'test_missing_end3', 'link-325');">test_missing_end3</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"> </tt>
<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> <tt id="link-326" class="py-name" targets="Function Bio.Decode.test()=Bio.Decode-module.html#test,Function Bio.EUtils.ReseekFile.test()=Bio.EUtils.ReseekFile-module.html#test,Package Martel.test=Martel.test-module.html,Method Martel.test.support.Storage.test()=Martel.test.support.Storage-class.html#test,Function Martel.test.test()=Martel.test-module.html#test,Function Martel.test.test_Expression.test()=Martel.test.test_Expression-module.html#test,Function Martel.test.test_Generate.test()=Martel.test.test_Generate-module.html#test,Function Martel.test.test_IterParser.test()=Martel.test.test_IterParser-module.html#test,Function Martel.test.test_Iterator.test()=Martel.test.test_Iterator-module.html#test,Function Martel.test.test_LAX.test()=Martel.test.test_LAX-module.html#test,Function Martel.test.test_ParseRecords.test()=Martel.test.test_ParseRecords-module.html#test,Function Martel.test.test_Parser.test()=Martel.test.test_Parser-module.html#test,Function Martel.test.test_RecordReader.test()=Martel.test.test_RecordReader-module.html#test,Function Martel.test.test_RecordReader2.test()=Martel.test.test_RecordReader2-module.html#test,Function Martel.test.test_Time.test()=Martel.test.test_Time-module.html#test,Function Martel.test.test_attrs.test()=Martel.test.test_attrs-module.html#test,Function Martel.test.test_convert_re.test()=Martel.test.test_convert_re-module.html#test,Function Martel.test.test_delimiter.test()=Martel.test.test_delimiter-module.html#test,Function Martel.test.test_macros.test()=Martel.test.test_macros-module.html#test,Function Martel.test.test_optimize.test()=Martel.test.test_optimize-module.html#test,Function Martel.test.test_swissprot38.test()=Martel.test.test_swissprot38-module.html#test"><a title="Bio.Decode.test
Bio.EUtils.ReseekFile.test
Martel.test
Martel.test.support.Storage.test
Martel.test.test
Martel.test.test_Expression.test
Martel.test.test_Generate.test
Martel.test.test_IterParser.test
Martel.test.test_Iterator.test
Martel.test.test_LAX.test
Martel.test.test_ParseRecords.test
Martel.test.test_Parser.test
Martel.test.test_RecordReader.test
Martel.test.test_RecordReader2.test
Martel.test.test_Time.test
Martel.test.test_attrs.test
Martel.test.test_convert_re.test
Martel.test.test_delimiter.test
Martel.test.test_macros.test
Martel.test.test_optimize.test
Martel.test.test_swissprot38.test" class="py-name" href="#" onclick="return doclink('link-326', 'test', 'link-326');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> </tt><script type="text/javascript">
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