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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.CDD-module.html">Package CDD</a> ::
Module cdd_format
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<h1 class="epydoc">Source Code for <a href="Bio.CDD.cdd_format-module.html">Module Bio.CDD.cdd_format</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Copyright 2001 by Katharine Lindner. All rights reserved.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license. Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""Martel based parser to read CDD formatted files.</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">This is a huge regular regular expression for CDD, built using</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">the 'regular expressiona on steroids' capabilities of Martel.</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">Notes:</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring">Just so I remember -- the new end of line syntax is:</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring"> New regexp syntax - \R</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring"> \R means "\n|\r\n?"</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring"> [\R] means "[\n\r]"</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-docstring">This helps us have endlines be consistent across platforms.</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-docstring"># standard library</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-docstring">http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">string</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-comment"># Martel</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-1', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module Martel.RecordReader=Martel.RecordReader-module.html,Class Martel.RecordReader.RecordReader=Martel.RecordReader.RecordReader-class.html"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-2', 'RecordReader', 'link-2');">RecordReader</a></tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-3', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-4', 'Str', 'link-4');">Str</a></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-5" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-5', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-6" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-6', 'AnyEol', 'link-6');">AnyEol</a></tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-7" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-7', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-8" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-8', 'ToEol', 'link-8');">ToEol</a></tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-9" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-9', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-10" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-10', 'Group', 'link-10');">Group</a></tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-11" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-11', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-12" class="py-name" targets="Function Martel.Alt()=Martel-module.html#Alt,Class Martel.Expression.Alt=Martel.Expression.Alt-class.html"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-12', 'Alt', 'link-12');">Alt</a></tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-13" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-13', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-14" class="py-name" targets="Function Martel.Opt()=Martel-module.html#Opt"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-14', 'Opt', 'link-14');">Opt</a></tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-15" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-15', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-16" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-16', 'Rep', 'link-16');">Rep</a></tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-17" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-17', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-18" class="py-name" targets="Function Martel.Rep1()=Martel-module.html#Rep1"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-18', 'Rep1', 'link-18');">Rep1</a></tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-19" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-19', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-20" class="py-name" targets="Function Martel.Any()=Martel-module.html#Any,Class Martel.Expression.Any=Martel.Expression.Any-class.html"><a title="Martel.Any
Martel.Expression.Any" class="py-name" href="#" onclick="return doclink('link-20', 'Any', 'link-20');">Any</a></tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-21" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-21', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-22" class="py-name" targets="Function Martel.AnyBut()=Martel-module.html#AnyBut"><a title="Martel.AnyBut" class="py-name" href="#" onclick="return doclink('link-22', 'AnyBut', 'link-22');">AnyBut</a></tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-23" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-23', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-24" class="py-name" targets="Function Martel.Assert()=Martel-module.html#Assert,Class Martel.Expression.Assert=Martel.Expression.Assert-class.html"><a title="Martel.Assert
Martel.Expression.Assert" class="py-name" href="#" onclick="return doclink('link-24', 'Assert', 'link-24');">Assert</a></tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-25" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-25', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-26" class="py-name" targets="Function Martel.AssertNot()=Martel-module.html#AssertNot"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-26', 'AssertNot', 'link-26');">AssertNot</a></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt class="py-comment"># --- first set up some helper constants and functions</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Copyright 2002 by Katharine Lindner. All rights reserved.</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license. Please see the LICENSE file that should have been included</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"><tt id="link-27" class="py-name" targets="Variable Bio.CDD.cdd_format.upper_alpha=Bio.CDD.cdd_format-module.html#upper_alpha"><a title="Bio.CDD.cdd_format.upper_alpha" class="py-name" href="#" onclick="return doclink('link-27', 'upper_alpha', 'link-27');">upper_alpha</a></tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name"><a title="Martel.Any
Martel.Expression.Any" class="py-name" href="#" onclick="return doclink('link-28', 'Any', 'link-20');">Any</a></tt><tt class="py-op">(</tt> <tt class="py-string">"ABCDEFGHIJKLMNOPQRSTUVWXYZ"</tt> <tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt id="link-29" class="py-name" targets="Variable Bio.CDD.cdd_format.white_space=Bio.CDD.cdd_format-module.html#white_space,Variable Bio.LocusLink.locus_format.white_space=Bio.LocusLink.locus_format-module.html#white_space,Variable Bio.MetaTool.metatool_format.white_space=Bio.MetaTool.metatool_format-module.html#white_space,Variable Bio.Saf.saf_format.white_space=Bio.Saf.saf_format-module.html#white_space"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-29', 'white_space', 'link-29');">white_space</a></tt> <tt class="py-op">=</tt> <tt id="link-30" class="py-name"><a title="Martel.Any
Martel.Expression.Any" class="py-name" href="#" onclick="return doclink('link-30', 'Any', 'link-20');">Any</a></tt><tt class="py-op">(</tt> <tt class="py-string">"\t "</tt> <tt class="py-op">)</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt id="link-31" class="py-name" targets="Variable Bio.CDD.cdd_format.eols=Bio.CDD.cdd_format-module.html#eols"><a title="Bio.CDD.cdd_format.eols" class="py-name" href="#" onclick="return doclink('link-31', 'eols', 'link-31');">eols</a></tt> <tt class="py-op">=</tt> <tt class="py-name">chr</tt><tt class="py-op">(</tt> <tt class="py-number">13</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-name">chr</tt><tt class="py-op">(</tt> <tt class="py-number">10</tt> <tt class="py-op">)</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt id="link-32" class="py-name" targets="Variable Bio.CDD.cdd_format.white_spaces=Bio.CDD.cdd_format-module.html#white_spaces"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-32', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-33', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-34" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-34', 'white_space', 'link-29');">white_space</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt id="link-35" class="py-name" targets="Variable Bio.CDD.cdd_format.summary_line=Bio.CDD.cdd_format-module.html#summary_line"><a title="Bio.CDD.cdd_format.summary_line" class="py-name" href="#" onclick="return doclink('link-35', 'summary_line', 'link-35');">summary_line</a></tt> <tt class="py-op">=</tt> <tt id="link-36" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-36', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"CD summary"</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-37" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-37', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt id="link-38" class="py-name" targets="Variable Bio.CDD.cdd_format.cd_tag=Bio.CDD.cdd_format-module.html#cd_tag"><a title="Bio.CDD.cdd_format.cd_tag" class="py-name" href="#" onclick="return doclink('link-38', 'cd_tag', 'link-38');">cd_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-39" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-39', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"cd_tag"</tt><tt class="py-op">,</tt> <tt id="link-40" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-40', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"CD:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"><tt id="link-41" class="py-name" targets="Variable Bio.CDD.cdd_format.description_tag=Bio.CDD.cdd_format-module.html#description_tag"><a title="Bio.CDD.cdd_format.description_tag" class="py-name" href="#" onclick="return doclink('link-41', 'description_tag', 'link-41');">description_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-42" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-42', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"description_tag"</tt><tt class="py-op">,</tt> <tt id="link-43" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-43', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Description:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt id="link-44" class="py-name" targets="Variable Bio.CDD.cdd_format.status_tag=Bio.CDD.cdd_format-module.html#status_tag"><a title="Bio.CDD.cdd_format.status_tag" class="py-name" href="#" onclick="return doclink('link-44', 'status_tag', 'link-44');">status_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-45" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-45', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"status_tag"</tt><tt class="py-op">,</tt> <tt id="link-46" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-46', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"CD status:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt id="link-47" class="py-name" targets="Variable Bio.CDD.cdd_format.source_tag=Bio.CDD.cdd_format-module.html#source_tag"><a title="Bio.CDD.cdd_format.source_tag" class="py-name" href="#" onclick="return doclink('link-47', 'source_tag', 'link-47');">source_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-48" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-48', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"source_tag"</tt><tt class="py-op">,</tt> <tt id="link-49" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-49', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Source:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"><tt id="link-50" class="py-name" targets="Variable Bio.CDD.cdd_format.date_tag=Bio.CDD.cdd_format-module.html#date_tag"><a title="Bio.CDD.cdd_format.date_tag" class="py-name" href="#" onclick="return doclink('link-50', 'date_tag', 'link-50');">date_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-51" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-51', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"date_tag"</tt><tt class="py-op">,</tt> <tt id="link-52" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-52', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Created:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"><tt id="link-53" class="py-name" targets="Variable Bio.CDD.cdd_format.reference_tag=Bio.CDD.cdd_format-module.html#reference_tag"><a title="Bio.CDD.cdd_format.reference_tag" class="py-name" href="#" onclick="return doclink('link-53', 'reference_tag', 'link-53');">reference_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-54', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"reference_tag"</tt><tt class="py-op">,</tt> <tt id="link-55" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-55', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"References:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"><tt id="link-56" class="py-name" targets="Variable Bio.CDD.cdd_format.taxonomy_tag=Bio.CDD.cdd_format-module.html#taxonomy_tag"><a title="Bio.CDD.cdd_format.taxonomy_tag" class="py-name" href="#" onclick="return doclink('link-56', 'taxonomy_tag', 'link-56');">taxonomy_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-57" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-57', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"taxonomy_tag"</tt><tt class="py-op">,</tt> <tt id="link-58" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-58', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Taxonomy spanned:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt id="link-59" class="py-name" targets="Variable Bio.CDD.cdd_format.aligned_tag=Bio.CDD.cdd_format-module.html#aligned_tag"><a title="Bio.CDD.cdd_format.aligned_tag" class="py-name" href="#" onclick="return doclink('link-59', 'aligned_tag', 'link-59');">aligned_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-60" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-60', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"aligned_tag"</tt><tt class="py-op">,</tt> <tt id="link-61" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-61', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Aligned sequences:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt id="link-62" class="py-name" targets="Variable Bio.CDD.cdd_format.representative_tag=Bio.CDD.cdd_format-module.html#representative_tag"><a title="Bio.CDD.cdd_format.representative_tag" class="py-name" href="#" onclick="return doclink('link-62', 'representative_tag', 'link-62');">representative_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-63" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-63', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"representative_tag"</tt><tt class="py-op">,</tt> <tt id="link-64" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-64', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Representative:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt id="link-65" class="py-name" targets="Variable Bio.CDD.cdd_format.range_tag=Bio.CDD.cdd_format-module.html#range_tag"><a title="Bio.CDD.cdd_format.range_tag" class="py-name" href="#" onclick="return doclink('link-65', 'range_tag', 'link-65');">range_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-66" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-66', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"range_tag"</tt><tt class="py-op">,</tt> <tt id="link-67" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-67', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Aligned range:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt id="link-68" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_tag=Bio.CDD.cdd_format-module.html#sequence_tag"><a title="Bio.CDD.cdd_format.sequence_tag" class="py-name" href="#" onclick="return doclink('link-68', 'sequence_tag', 'link-68');">sequence_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-69" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-69', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"sequence_tag"</tt><tt class="py-op">,</tt> <tt id="link-70" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-70', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Sequence:"</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"><tt id="link-71" class="py-name" targets="Variable Bio.CDD.cdd_format.has_tag=Bio.CDD.cdd_format-module.html#has_tag"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-71', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">=</tt> <tt id="link-72" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-72', 'Alt', 'link-12');">Alt</a></tt><tt class="py-op">(</tt> <tt id="link-73" class="py-name"><a title="Bio.CDD.cdd_format.cd_tag" class="py-name" href="#" onclick="return doclink('link-73', 'cd_tag', 'link-38');">cd_tag</a></tt><tt class="py-op">,</tt> <tt id="link-74" class="py-name"><a title="Bio.CDD.cdd_format.description_tag" class="py-name" href="#" onclick="return doclink('link-74', 'description_tag', 'link-41');">description_tag</a></tt><tt class="py-op">,</tt> <tt id="link-75" class="py-name"><a title="Bio.CDD.cdd_format.status_tag" class="py-name" href="#" onclick="return doclink('link-75', 'status_tag', 'link-44');">status_tag</a></tt><tt class="py-op">,</tt> <tt id="link-76" class="py-name"><a title="Bio.CDD.cdd_format.source_tag" class="py-name" href="#" onclick="return doclink('link-76', 'source_tag', 'link-47');">source_tag</a></tt><tt class="py-op">,</tt> <tt id="link-77" class="py-name"><a title="Bio.CDD.cdd_format.date_tag" class="py-name" href="#" onclick="return doclink('link-77', 'date_tag', 'link-50');">date_tag</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt id="link-78" class="py-name"><a title="Bio.CDD.cdd_format.reference_tag" class="py-name" href="#" onclick="return doclink('link-78', 'reference_tag', 'link-53');">reference_tag</a></tt><tt class="py-op">,</tt> <tt id="link-79" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_tag" class="py-name" href="#" onclick="return doclink('link-79', 'taxonomy_tag', 'link-56');">taxonomy_tag</a></tt><tt class="py-op">,</tt> <tt id="link-80" class="py-name"><a title="Bio.CDD.cdd_format.aligned_tag" class="py-name" href="#" onclick="return doclink('link-80', 'aligned_tag', 'link-59');">aligned_tag</a></tt><tt class="py-op">,</tt> <tt id="link-81" class="py-name"><a title="Bio.CDD.cdd_format.representative_tag" class="py-name" href="#" onclick="return doclink('link-81', 'representative_tag', 'link-62');">representative_tag</a></tt><tt class="py-op">,</tt> <tt id="link-82" class="py-name"><a title="Bio.CDD.cdd_format.range_tag" class="py-name" href="#" onclick="return doclink('link-82', 'range_tag', 'link-65');">range_tag</a></tt><tt class="py-op">,</tt> <tt id="link-83" class="py-name"><a title="Bio.CDD.cdd_format.sequence_tag" class="py-name" href="#" onclick="return doclink('link-83', 'sequence_tag', 'link-68');">sequence_tag</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt id="link-84" class="py-name" targets="Variable Bio.CDD.cdd_format.cd_key_line=Bio.CDD.cdd_format-module.html#cd_key_line"><a title="Bio.CDD.cdd_format.cd_key_line" class="py-name" href="#" onclick="return doclink('link-84', 'cd_key_line', 'link-84');">cd_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-85" class="py-name"><a title="Bio.CDD.cdd_format.cd_tag" class="py-name" href="#" onclick="return doclink('link-85', 'cd_tag', 'link-38');">cd_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-86" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-86', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-87" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-87', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt id="link-88" class="py-name" targets="Variable Bio.CDD.cdd_format.description_key_line=Bio.CDD.cdd_format-module.html#description_key_line"><a title="Bio.CDD.cdd_format.description_key_line" class="py-name" href="#" onclick="return doclink('link-88', 'description_key_line', 'link-88');">description_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-89" class="py-name"><a title="Bio.CDD.cdd_format.description_tag" class="py-name" href="#" onclick="return doclink('link-89', 'description_tag', 'link-41');">description_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-90" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-90', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-91" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-91', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt id="link-92" class="py-name" targets="Variable Bio.CDD.cdd_format.status_key_line=Bio.CDD.cdd_format-module.html#status_key_line"><a title="Bio.CDD.cdd_format.status_key_line" class="py-name" href="#" onclick="return doclink('link-92', 'status_key_line', 'link-92');">status_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-93" class="py-name"><a title="Bio.CDD.cdd_format.status_tag" class="py-name" href="#" onclick="return doclink('link-93', 'status_tag', 'link-44');">status_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-94" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-94', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-95" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-95', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt id="link-96" class="py-name" targets="Variable Bio.CDD.cdd_format.source_key_line=Bio.CDD.cdd_format-module.html#source_key_line"><a title="Bio.CDD.cdd_format.source_key_line" class="py-name" href="#" onclick="return doclink('link-96', 'source_key_line', 'link-96');">source_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-97" class="py-name"><a title="Bio.CDD.cdd_format.source_tag" class="py-name" href="#" onclick="return doclink('link-97', 'source_tag', 'link-47');">source_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-98" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-98', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-99" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-99', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt id="link-100" class="py-name" targets="Variable Bio.CDD.cdd_format.date_key_line=Bio.CDD.cdd_format-module.html#date_key_line"><a title="Bio.CDD.cdd_format.date_key_line" class="py-name" href="#" onclick="return doclink('link-100', 'date_key_line', 'link-100');">date_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-101" class="py-name"><a title="Bio.CDD.cdd_format.date_tag" class="py-name" href="#" onclick="return doclink('link-101', 'date_tag', 'link-50');">date_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-102" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-102', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-103" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-103', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt id="link-104" class="py-name" targets="Variable Bio.CDD.cdd_format.reference_key_line=Bio.CDD.cdd_format-module.html#reference_key_line"><a title="Bio.CDD.cdd_format.reference_key_line" class="py-name" href="#" onclick="return doclink('link-104', 'reference_key_line', 'link-104');">reference_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-105" class="py-name"><a title="Bio.CDD.cdd_format.reference_tag" class="py-name" href="#" onclick="return doclink('link-105', 'reference_tag', 'link-53');">reference_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-106" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-106', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-107" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-107', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt id="link-108" class="py-name" targets="Variable Bio.CDD.cdd_format.taxonomy_key_line=Bio.CDD.cdd_format-module.html#taxonomy_key_line"><a title="Bio.CDD.cdd_format.taxonomy_key_line" class="py-name" href="#" onclick="return doclink('link-108', 'taxonomy_key_line', 'link-108');">taxonomy_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-109" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_tag" class="py-name" href="#" onclick="return doclink('link-109', 'taxonomy_tag', 'link-56');">taxonomy_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-110" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-110', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-111" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-111', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt id="link-112" class="py-name" targets="Variable Bio.CDD.cdd_format.aligned_key_line=Bio.CDD.cdd_format-module.html#aligned_key_line"><a title="Bio.CDD.cdd_format.aligned_key_line" class="py-name" href="#" onclick="return doclink('link-112', 'aligned_key_line', 'link-112');">aligned_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-113" class="py-name"><a title="Bio.CDD.cdd_format.aligned_tag" class="py-name" href="#" onclick="return doclink('link-113', 'aligned_tag', 'link-59');">aligned_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-114" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-114', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-115" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-115', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt id="link-116" class="py-name" targets="Variable Bio.CDD.cdd_format.representative_key_line=Bio.CDD.cdd_format-module.html#representative_key_line"><a title="Bio.CDD.cdd_format.representative_key_line" class="py-name" href="#" onclick="return doclink('link-116', 'representative_key_line', 'link-116');">representative_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-117" class="py-name"><a title="Bio.CDD.cdd_format.representative_tag" class="py-name" href="#" onclick="return doclink('link-117', 'representative_tag', 'link-62');">representative_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-118" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-118', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-119" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-119', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt id="link-120" class="py-name" targets="Variable Bio.CDD.cdd_format.range_key_line=Bio.CDD.cdd_format-module.html#range_key_line"><a title="Bio.CDD.cdd_format.range_key_line" class="py-name" href="#" onclick="return doclink('link-120', 'range_key_line', 'link-120');">range_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-121" class="py-name"><a title="Bio.CDD.cdd_format.range_tag" class="py-name" href="#" onclick="return doclink('link-121', 'range_tag', 'link-65');">range_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-122" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-122', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-123" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-123', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"><tt id="link-124" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_key_line=Bio.CDD.cdd_format-module.html#sequence_key_line"><a title="Bio.CDD.cdd_format.sequence_key_line" class="py-name" href="#" onclick="return doclink('link-124', 'sequence_key_line', 'link-124');">sequence_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-125" class="py-name"><a title="Bio.CDD.cdd_format.sequence_tag" class="py-name" href="#" onclick="return doclink('link-125', 'sequence_tag', 'link-68');">sequence_tag</a></tt> <tt class="py-op">+</tt> <tt id="link-126" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-126', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-127" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-127', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt id="link-128" class="py-name" targets="Variable Bio.CDD.cdd_format.cd_contents_line=Bio.CDD.cdd_format-module.html#cd_contents_line"><a title="Bio.CDD.cdd_format.cd_contents_line" class="py-name" href="#" onclick="return doclink('link-128', 'cd_contents_line', 'link-128');">cd_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-129" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-129', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"cd_contents_line"</tt><tt class="py-op">,</tt> <tt id="link-130" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-130', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-131" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-131', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-132" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-132', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt id="link-133" class="py-name" targets="Variable Bio.CDD.cdd_format.description_contents_line=Bio.CDD.cdd_format-module.html#description_contents_line"><a title="Bio.CDD.cdd_format.description_contents_line" class="py-name" href="#" onclick="return doclink('link-133', 'description_contents_line', 'link-133');">description_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-134" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-134', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-135" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-135', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-136" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-136', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt id="link-137" class="py-name" targets="Variable Bio.CDD.cdd_format.status_contents_line=Bio.CDD.cdd_format-module.html#status_contents_line"><a title="Bio.CDD.cdd_format.status_contents_line" class="py-name" href="#" onclick="return doclink('link-137', 'status_contents_line', 'link-137');">status_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-138" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-138', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-139" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-139', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-140" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-140', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt id="link-141" class="py-name" targets="Variable Bio.CDD.cdd_format.source_contents_line=Bio.CDD.cdd_format-module.html#source_contents_line"><a title="Bio.CDD.cdd_format.source_contents_line" class="py-name" href="#" onclick="return doclink('link-141', 'source_contents_line', 'link-141');">source_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-142" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-142', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-143" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-143', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-144" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-144', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt id="link-145" class="py-name" targets="Variable Bio.CDD.cdd_format.date_contents_line=Bio.CDD.cdd_format-module.html#date_contents_line"><a title="Bio.CDD.cdd_format.date_contents_line" class="py-name" href="#" onclick="return doclink('link-145', 'date_contents_line', 'link-145');">date_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-146" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-146', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-147" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-147', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-148" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-148', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"><tt id="link-149" class="py-name" targets="Variable Bio.CDD.cdd_format.reference_contents_line=Bio.CDD.cdd_format-module.html#reference_contents_line"><a title="Bio.CDD.cdd_format.reference_contents_line" class="py-name" href="#" onclick="return doclink('link-149', 'reference_contents_line', 'link-149');">reference_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-150" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-150', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-151" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-151', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-152" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-152', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt id="link-153" class="py-name" targets="Variable Bio.CDD.cdd_format.taxonomy_contents_line=Bio.CDD.cdd_format-module.html#taxonomy_contents_line"><a title="Bio.CDD.cdd_format.taxonomy_contents_line" class="py-name" href="#" onclick="return doclink('link-153', 'taxonomy_contents_line', 'link-153');">taxonomy_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-154" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-154', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-155" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-155', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-156" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-156', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt id="link-157" class="py-name" targets="Variable Bio.CDD.cdd_format.aligned_contents_line=Bio.CDD.cdd_format-module.html#aligned_contents_line"><a title="Bio.CDD.cdd_format.aligned_contents_line" class="py-name" href="#" onclick="return doclink('link-157', 'aligned_contents_line', 'link-157');">aligned_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-158" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-158', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-159" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-159', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-160" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-160', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"><tt id="link-161" class="py-name" targets="Variable Bio.CDD.cdd_format.representative_contents_line=Bio.CDD.cdd_format-module.html#representative_contents_line"><a title="Bio.CDD.cdd_format.representative_contents_line" class="py-name" href="#" onclick="return doclink('link-161', 'representative_contents_line', 'link-161');">representative_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-162" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-162', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-163" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-163', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-164" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-164', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt id="link-165" class="py-name" targets="Variable Bio.CDD.cdd_format.range_contents_line=Bio.CDD.cdd_format-module.html#range_contents_line"><a title="Bio.CDD.cdd_format.range_contents_line" class="py-name" href="#" onclick="return doclink('link-165', 'range_contents_line', 'link-165');">range_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-166" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-166', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-167" class="py-name"><a title="Bio.CDD.cdd_format.has_tag" class="py-name" href="#" onclick="return doclink('link-167', 'has_tag', 'link-71');">has_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-168" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-168', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt id="link-169" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_contents_line=Bio.CDD.cdd_format-module.html#sequence_contents_line"><a title="Bio.CDD.cdd_format.sequence_contents_line" class="py-name" href="#" onclick="return doclink('link-169', 'sequence_contents_line', 'link-169');">sequence_contents_line</a></tt> <tt class="py-op">=</tt> <tt id="link-170" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-170', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"sequence_contents_line"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt id="link-171" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-171', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-172" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-172', 'Rep1', 'link-18');">Rep1</a></tt><tt class="py-op">(</tt> <tt id="link-173" class="py-name"><a title="Bio.CDD.cdd_format.upper_alpha" class="py-name" href="#" onclick="return doclink('link-173', 'upper_alpha', 'link-27');">upper_alpha</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-174" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-174', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-175" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-175', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt id="link-176" class="py-name" targets="Variable Bio.CDD.cdd_format.sentinel_line=Bio.CDD.cdd_format-module.html#sentinel_line"><a title="Bio.CDD.cdd_format.sentinel_line" class="py-name" href="#" onclick="return doclink('link-176', 'sentinel_line', 'link-176');">sentinel_line</a></tt> <tt class="py-op">=</tt> <tt id="link-177" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-177', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-178" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-178', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">"Definition"</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-179" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-179', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-180" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-180', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt id="link-181" class="py-name" targets="Variable Bio.CDD.cdd_format.boiler_plate=Bio.CDD.cdd_format-module.html#boiler_plate"><a title="Bio.CDD.cdd_format.boiler_plate" class="py-name" href="#" onclick="return doclink('link-181', 'boiler_plate', 'link-181');">boiler_plate</a></tt> <tt class="py-op">=</tt> <tt id="link-182" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-182', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-183" class="py-name"><a title="Bio.CDD.cdd_format.sentinel_line" class="py-name" href="#" onclick="return doclink('link-183', 'sentinel_line', 'link-176');">sentinel_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-184" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-184', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt id="link-185" class="py-name" targets="Variable Bio.CDD.cdd_format.definition_line=Bio.CDD.cdd_format-module.html#definition_line"><a title="Bio.CDD.cdd_format.definition_line" class="py-name" href="#" onclick="return doclink('link-185', 'definition_line', 'link-185');">definition_line</a></tt> <tt class="py-op">=</tt> <tt id="link-186" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-186', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"definition_line"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt id="link-187" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-187', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-188" class="py-name"><a title="Martel.AnyBut" class="py-name" href="#" onclick="return doclink('link-188', 'AnyBut', 'link-22');">AnyBut</a></tt><tt class="py-op">(</tt> <tt id="link-189" class="py-name"><a title="Bio.CDD.cdd_format.eols" class="py-name" href="#" onclick="return doclink('link-189', 'eols', 'link-31');">eols</a></tt> <tt class="py-op">+</tt> <tt class="py-string">'['</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-190" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-190', 'Str', 'link-4');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-string">'[CD]'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-191" class="py-name"><a title="Bio.CDD.cdd_format.white_spaces" class="py-name" href="#" onclick="return doclink('link-191', 'white_spaces', 'link-32');">white_spaces</a></tt> <tt class="py-op">+</tt> <tt id="link-192" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-192', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt id="link-193" class="py-name" targets="Variable Bio.CDD.cdd_format.pdb_id_line=Bio.CDD.cdd_format-module.html#pdb_id_line"><a title="Bio.CDD.cdd_format.pdb_id_line" class="py-name" href="#" onclick="return doclink('link-193', 'pdb_id_line', 'link-193');">pdb_id_line</a></tt> <tt class="py-op">=</tt> <tt id="link-194" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-194', 'AssertNot', 'link-26');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-195" class="py-name"><a title="Bio.CDD.cdd_format.definition_line" class="py-name" href="#" onclick="return doclink('link-195', 'definition_line', 'link-185');">definition_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-196" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-196', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt id="link-197" class="py-name" targets="Variable Bio.CDD.cdd_format.pdb_id_multiline=Bio.CDD.cdd_format-module.html#pdb_id_multiline"><a title="Bio.CDD.cdd_format.pdb_id_multiline" class="py-name" href="#" onclick="return doclink('link-197', 'pdb_id_multiline', 'link-197');">pdb_id_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-198" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-198', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"pdb_id_multiline"</tt><tt class="py-op">,</tt> <tt id="link-199" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-199', 'Rep1', 'link-18');">Rep1</a></tt><tt class="py-op">(</tt> <tt id="link-200" class="py-name"><a title="Bio.CDD.cdd_format.pdb_id_line" class="py-name" href="#" onclick="return doclink('link-200', 'pdb_id_line', 'link-193');">pdb_id_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt id="link-201" class="py-name" targets="Variable Bio.CDD.cdd_format.table_entry=Bio.CDD.cdd_format-module.html#table_entry,Variable Bio.expressions.blast.ncbiblast.table_entry=Bio.expressions.blast.ncbiblast-module.html#table_entry,Variable Bio.expressions.blast.wublast.table_entry=Bio.expressions.blast.wublast-module.html#table_entry"><a title="Bio.CDD.cdd_format.table_entry
Bio.expressions.blast.ncbiblast.table_entry
Bio.expressions.blast.wublast.table_entry" class="py-name" href="#" onclick="return doclink('link-201', 'table_entry', 'link-201');">table_entry</a></tt> <tt class="py-op">=</tt> <tt id="link-202" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-202', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"table_entry"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt id="link-203" class="py-name"><a title="Bio.CDD.cdd_format.pdb_id_multiline" class="py-name" href="#" onclick="return doclink('link-203', 'pdb_id_multiline', 'link-197');">pdb_id_multiline</a></tt> <tt class="py-op">+</tt> <tt id="link-204" class="py-name"><a title="Bio.CDD.cdd_format.definition_line" class="py-name" href="#" onclick="return doclink('link-204', 'definition_line', 'link-185');">definition_line</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt id="link-205" class="py-name" targets="Variable Bio.CDD.cdd_format.table=Bio.CDD.cdd_format-module.html#table,Variable Bio.expressions.blast.ncbiblast.table=Bio.expressions.blast.ncbiblast-module.html#table"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-205', 'table', 'link-205');">table</a></tt> <tt class="py-op">=</tt> <tt id="link-206" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-206', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"table"</tt><tt class="py-op">,</tt> <tt id="link-207" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-207', 'Rep1', 'link-18');">Rep1</a></tt><tt class="py-op">(</tt> <tt id="link-208" class="py-name"><a title="Bio.CDD.cdd_format.table_entry
Bio.expressions.blast.ncbiblast.table_entry
Bio.expressions.blast.wublast.table_entry" class="py-name" href="#" onclick="return doclink('link-208', 'table_entry', 'link-201');">table_entry</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"><tt id="link-209" class="py-name" targets="Variable Bio.CDD.cdd_format.cd_contents_multiline=Bio.CDD.cdd_format-module.html#cd_contents_multiline"><a title="Bio.CDD.cdd_format.cd_contents_multiline" class="py-name" href="#" onclick="return doclink('link-209', 'cd_contents_multiline', 'link-209');">cd_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-210" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-210', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"cd_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt id="link-211" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-211', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-212" class="py-name"><a title="Bio.CDD.cdd_format.cd_contents_line" class="py-name" href="#" onclick="return doclink('link-212', 'cd_contents_line', 'link-128');">cd_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt id="link-213" class="py-name" targets="Variable Bio.CDD.cdd_format.description_contents_multiline=Bio.CDD.cdd_format-module.html#description_contents_multiline"><a title="Bio.CDD.cdd_format.description_contents_multiline" class="py-name" href="#" onclick="return doclink('link-213', 'description_contents_multiline', 'link-213');">description_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-214" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-214', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"description_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt id="link-215" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-215', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-216" class="py-name"><a title="Bio.CDD.cdd_format.description_contents_line" class="py-name" href="#" onclick="return doclink('link-216', 'description_contents_line', 'link-133');">description_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"><tt id="link-217" class="py-name" targets="Variable Bio.CDD.cdd_format.status_contents_multiline=Bio.CDD.cdd_format-module.html#status_contents_multiline"><a title="Bio.CDD.cdd_format.status_contents_multiline" class="py-name" href="#" onclick="return doclink('link-217', 'status_contents_multiline', 'link-217');">status_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-218" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-218', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"status_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt id="link-219" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-219', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-220" class="py-name"><a title="Bio.CDD.cdd_format.status_contents_line" class="py-name" href="#" onclick="return doclink('link-220', 'status_contents_line', 'link-137');">status_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"><tt id="link-221" class="py-name" targets="Variable Bio.CDD.cdd_format.source_contents_multiline=Bio.CDD.cdd_format-module.html#source_contents_multiline"><a title="Bio.CDD.cdd_format.source_contents_multiline" class="py-name" href="#" onclick="return doclink('link-221', 'source_contents_multiline', 'link-221');">source_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-222" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-222', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"source_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-223" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-223', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-224" class="py-name"><a title="Bio.CDD.cdd_format.source_contents_line" class="py-name" href="#" onclick="return doclink('link-224', 'source_contents_line', 'link-141');">source_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt id="link-225" class="py-name" targets="Variable Bio.CDD.cdd_format.date_contents_multiline=Bio.CDD.cdd_format-module.html#date_contents_multiline"><a title="Bio.CDD.cdd_format.date_contents_multiline" class="py-name" href="#" onclick="return doclink('link-225', 'date_contents_multiline', 'link-225');">date_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-226" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-226', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"date_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt id="link-227" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-227', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-228" class="py-name"><a title="Bio.CDD.cdd_format.date_contents_line" class="py-name" href="#" onclick="return doclink('link-228', 'date_contents_line', 'link-145');">date_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt id="link-229" class="py-name" targets="Variable Bio.CDD.cdd_format.reference_contents_multiline=Bio.CDD.cdd_format-module.html#reference_contents_multiline"><a title="Bio.CDD.cdd_format.reference_contents_multiline" class="py-name" href="#" onclick="return doclink('link-229', 'reference_contents_multiline', 'link-229');">reference_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-230" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-230', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"reference_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-231" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-231', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-232" class="py-name"><a title="Bio.CDD.cdd_format.reference_contents_line" class="py-name" href="#" onclick="return doclink('link-232', 'reference_contents_line', 'link-149');">reference_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt id="link-233" class="py-name" targets="Variable Bio.CDD.cdd_format.taxonomy_contents_multiline=Bio.CDD.cdd_format-module.html#taxonomy_contents_multiline"><a title="Bio.CDD.cdd_format.taxonomy_contents_multiline" class="py-name" href="#" onclick="return doclink('link-233', 'taxonomy_contents_multiline', 'link-233');">taxonomy_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-234" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-234', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"taxonomy_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt id="link-235" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-235', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-236" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_contents_line" class="py-name" href="#" onclick="return doclink('link-236', 'taxonomy_contents_line', 'link-153');">taxonomy_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt id="link-237" class="py-name" targets="Variable Bio.CDD.cdd_format.aligned_contents_multiline=Bio.CDD.cdd_format-module.html#aligned_contents_multiline"><a title="Bio.CDD.cdd_format.aligned_contents_multiline" class="py-name" href="#" onclick="return doclink('link-237', 'aligned_contents_multiline', 'link-237');">aligned_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-238" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-238', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"aligned_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt id="link-239" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-239', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-240" class="py-name"><a title="Bio.CDD.cdd_format.aligned_contents_line" class="py-name" href="#" onclick="return doclink('link-240', 'aligned_contents_line', 'link-157');">aligned_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt id="link-241" class="py-name" targets="Variable Bio.CDD.cdd_format.representative_contents_multiline=Bio.CDD.cdd_format-module.html#representative_contents_multiline"><a title="Bio.CDD.cdd_format.representative_contents_multiline" class="py-name" href="#" onclick="return doclink('link-241', 'representative_contents_multiline', 'link-241');">representative_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-242" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-242', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"representative_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt id="link-243" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-243', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-244" class="py-name"><a title="Bio.CDD.cdd_format.representative_contents_line" class="py-name" href="#" onclick="return doclink('link-244', 'representative_contents_line', 'link-161');">representative_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"><tt id="link-245" class="py-name" targets="Variable Bio.CDD.cdd_format.range_contents_multiline=Bio.CDD.cdd_format-module.html#range_contents_multiline"><a title="Bio.CDD.cdd_format.range_contents_multiline" class="py-name" href="#" onclick="return doclink('link-245', 'range_contents_multiline', 'link-245');">range_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-246" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-246', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"range_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-247" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-247', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-248" class="py-name"><a title="Bio.CDD.cdd_format.range_contents_line" class="py-name" href="#" onclick="return doclink('link-248', 'range_contents_line', 'link-165');">range_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt id="link-249" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_contents_multiline=Bio.CDD.cdd_format-module.html#sequence_contents_multiline"><a title="Bio.CDD.cdd_format.sequence_contents_multiline" class="py-name" href="#" onclick="return doclink('link-249', 'sequence_contents_multiline', 'link-249');">sequence_contents_multiline</a></tt> <tt class="py-op">=</tt> <tt id="link-250" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-250', 'Group', 'link-10');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">"sequence_contents_multiline"</tt><tt class="py-op">,</tt> \ </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-251" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-251', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-252" class="py-name"><a title="Bio.CDD.cdd_format.sequence_contents_line" class="py-name" href="#" onclick="return doclink('link-252', 'sequence_contents_line', 'link-169');">sequence_contents_line</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt id="link-253" class="py-name" targets="Variable Bio.CDD.cdd_format.cd_block=Bio.CDD.cdd_format-module.html#cd_block"><a title="Bio.CDD.cdd_format.cd_block" class="py-name" href="#" onclick="return doclink('link-253', 'cd_block', 'link-253');">cd_block</a></tt> <tt class="py-op">=</tt> <tt id="link-254" class="py-name"><a title="Bio.CDD.cdd_format.cd_key_line" class="py-name" href="#" onclick="return doclink('link-254', 'cd_key_line', 'link-84');">cd_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-255" class="py-name"><a title="Bio.CDD.cdd_format.cd_contents_multiline" class="py-name" href="#" onclick="return doclink('link-255', 'cd_contents_multiline', 'link-209');">cd_contents_multiline</a></tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt id="link-256" class="py-name" targets="Variable Bio.CDD.cdd_format.description_block=Bio.CDD.cdd_format-module.html#description_block,Function Bio.Std.description_block()=Bio.Std-module.html#description_block"><a title="Bio.CDD.cdd_format.description_block
Bio.Std.description_block" class="py-name" href="#" onclick="return doclink('link-256', 'description_block', 'link-256');">description_block</a></tt> <tt class="py-op">=</tt> <tt id="link-257" class="py-name"><a title="Bio.CDD.cdd_format.description_key_line" class="py-name" href="#" onclick="return doclink('link-257', 'description_key_line', 'link-88');">description_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-258" class="py-name"><a title="Bio.CDD.cdd_format.description_contents_multiline" class="py-name" href="#" onclick="return doclink('link-258', 'description_contents_multiline', 'link-213');">description_contents_multiline</a></tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt id="link-259" class="py-name" targets="Variable Bio.CDD.cdd_format.status_block=Bio.CDD.cdd_format-module.html#status_block"><a title="Bio.CDD.cdd_format.status_block" class="py-name" href="#" onclick="return doclink('link-259', 'status_block', 'link-259');">status_block</a></tt> <tt class="py-op">=</tt> <tt id="link-260" class="py-name"><a title="Bio.CDD.cdd_format.status_key_line" class="py-name" href="#" onclick="return doclink('link-260', 'status_key_line', 'link-92');">status_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-261" class="py-name"><a title="Bio.CDD.cdd_format.status_contents_multiline" class="py-name" href="#" onclick="return doclink('link-261', 'status_contents_multiline', 'link-217');">status_contents_multiline</a></tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt id="link-262" class="py-name" targets="Variable Bio.CDD.cdd_format.source_block=Bio.CDD.cdd_format-module.html#source_block,Variable Bio.expressions.genbank.source_block=Bio.expressions.genbank-module.html#source_block"><a title="Bio.CDD.cdd_format.source_block
Bio.expressions.genbank.source_block" class="py-name" href="#" onclick="return doclink('link-262', 'source_block', 'link-262');">source_block</a></tt> <tt class="py-op">=</tt> <tt id="link-263" class="py-name"><a title="Bio.CDD.cdd_format.source_key_line" class="py-name" href="#" onclick="return doclink('link-263', 'source_key_line', 'link-96');">source_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-264" class="py-name"><a title="Bio.CDD.cdd_format.source_contents_multiline" class="py-name" href="#" onclick="return doclink('link-264', 'source_contents_multiline', 'link-221');">source_contents_multiline</a></tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"><tt id="link-265" class="py-name" targets="Variable Bio.CDD.cdd_format.date_block=Bio.CDD.cdd_format-module.html#date_block"><a title="Bio.CDD.cdd_format.date_block" class="py-name" href="#" onclick="return doclink('link-265', 'date_block', 'link-265');">date_block</a></tt> <tt class="py-op">=</tt> <tt id="link-266" class="py-name"><a title="Bio.CDD.cdd_format.date_key_line" class="py-name" href="#" onclick="return doclink('link-266', 'date_key_line', 'link-100');">date_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-267" class="py-name"><a title="Bio.CDD.cdd_format.date_contents_multiline" class="py-name" href="#" onclick="return doclink('link-267', 'date_contents_multiline', 'link-225');">date_contents_multiline</a></tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"><tt id="link-268" class="py-name" targets="Variable Bio.CDD.cdd_format.reference_block=Bio.CDD.cdd_format-module.html#reference_block"><a title="Bio.CDD.cdd_format.reference_block" class="py-name" href="#" onclick="return doclink('link-268', 'reference_block', 'link-268');">reference_block</a></tt> <tt class="py-op">=</tt> <tt id="link-269" class="py-name"><a title="Martel.Assert
Martel.Expression.Assert" class="py-name" href="#" onclick="return doclink('link-269', 'Assert', 'link-24');">Assert</a></tt><tt class="py-op">(</tt><tt id="link-270" class="py-name"><a title="Bio.CDD.cdd_format.reference_tag" class="py-name" href="#" onclick="return doclink('link-270', 'reference_tag', 'link-53');">reference_tag</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-271" class="py-name"><a title="Bio.CDD.cdd_format.reference_key_line" class="py-name" href="#" onclick="return doclink('link-271', 'reference_key_line', 'link-104');">reference_key_line</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt id="link-272" class="py-name"><a title="Bio.CDD.cdd_format.reference_contents_multiline" class="py-name" href="#" onclick="return doclink('link-272', 'reference_contents_multiline', 'link-229');">reference_contents_multiline</a></tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt id="link-273" class="py-name" targets="Variable Bio.CDD.cdd_format.taxonomy_block=Bio.CDD.cdd_format-module.html#taxonomy_block"><a title="Bio.CDD.cdd_format.taxonomy_block" class="py-name" href="#" onclick="return doclink('link-273', 'taxonomy_block', 'link-273');">taxonomy_block</a></tt> <tt class="py-op">=</tt> <tt id="link-274" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_key_line" class="py-name" href="#" onclick="return doclink('link-274', 'taxonomy_key_line', 'link-108');">taxonomy_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-275" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_contents_multiline" class="py-name" href="#" onclick="return doclink('link-275', 'taxonomy_contents_multiline', 'link-233');">taxonomy_contents_multiline</a></tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt id="link-276" class="py-name" targets="Variable Bio.CDD.cdd_format.aligned_block=Bio.CDD.cdd_format-module.html#aligned_block"><a title="Bio.CDD.cdd_format.aligned_block" class="py-name" href="#" onclick="return doclink('link-276', 'aligned_block', 'link-276');">aligned_block</a></tt> <tt class="py-op">=</tt> <tt id="link-277" class="py-name"><a title="Bio.CDD.cdd_format.aligned_key_line" class="py-name" href="#" onclick="return doclink('link-277', 'aligned_key_line', 'link-112');">aligned_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-278" class="py-name"><a title="Bio.CDD.cdd_format.aligned_contents_multiline" class="py-name" href="#" onclick="return doclink('link-278', 'aligned_contents_multiline', 'link-237');">aligned_contents_multiline</a></tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt id="link-279" class="py-name" targets="Variable Bio.CDD.cdd_format.representative_block=Bio.CDD.cdd_format-module.html#representative_block"><a title="Bio.CDD.cdd_format.representative_block" class="py-name" href="#" onclick="return doclink('link-279', 'representative_block', 'link-279');">representative_block</a></tt> <tt class="py-op">=</tt> <tt id="link-280" class="py-name"><a title="Bio.CDD.cdd_format.representative_key_line" class="py-name" href="#" onclick="return doclink('link-280', 'representative_key_line', 'link-116');">representative_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-281" class="py-name"><a title="Bio.CDD.cdd_format.representative_contents_multiline" class="py-name" href="#" onclick="return doclink('link-281', 'representative_contents_multiline', 'link-241');">representative_contents_multiline</a></tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt id="link-282" class="py-name" targets="Variable Bio.CDD.cdd_format.range_block=Bio.CDD.cdd_format-module.html#range_block"><a title="Bio.CDD.cdd_format.range_block" class="py-name" href="#" onclick="return doclink('link-282', 'range_block', 'link-282');">range_block</a></tt> <tt class="py-op">=</tt> <tt id="link-283" class="py-name"><a title="Bio.CDD.cdd_format.range_key_line" class="py-name" href="#" onclick="return doclink('link-283', 'range_key_line', 'link-120');">range_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-284" class="py-name"><a title="Bio.CDD.cdd_format.range_contents_multiline" class="py-name" href="#" onclick="return doclink('link-284', 'range_contents_multiline', 'link-245');">range_contents_multiline</a></tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"><tt id="link-285" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_block=Bio.CDD.cdd_format-module.html#sequence_block,Variable Bio.NBRF.nbrf_format.sequence_block=Bio.NBRF.nbrf_format-module.html#sequence_block,Function Bio.Std.sequence_block()=Bio.Std-module.html#sequence_block"><a title="Bio.CDD.cdd_format.sequence_block
Bio.NBRF.nbrf_format.sequence_block
Bio.Std.sequence_block" class="py-name" href="#" onclick="return doclink('link-285', 'sequence_block', 'link-285');">sequence_block</a></tt> <tt class="py-op">=</tt> <tt id="link-286" class="py-name"><a title="Bio.CDD.cdd_format.sequence_key_line" class="py-name" href="#" onclick="return doclink('link-286', 'sequence_key_line', 'link-124');">sequence_key_line</a></tt> <tt class="py-op">+</tt> <tt id="link-287" class="py-name"><a title="Bio.CDD.cdd_format.sequence_contents_multiline" class="py-name" href="#" onclick="return doclink('link-287', 'sequence_contents_multiline', 'link-249');">sequence_contents_multiline</a></tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt id="link-288" class="py-name" targets="Variable Bio.CDD.cdd_format.trailer_line=Bio.CDD.cdd_format-module.html#trailer_line"><a title="Bio.CDD.cdd_format.trailer_line" class="py-name" href="#" onclick="return doclink('link-288', 'trailer_line', 'link-288');">trailer_line</a></tt> <tt class="py-op">=</tt> <tt id="link-289" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-289', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"><tt id="link-290" class="py-name" targets="Variable Bio.CDD.cdd_format.cdd_record=Bio.CDD.cdd_format-module.html#cdd_record"><a title="Bio.CDD.cdd_format.cdd_record" class="py-name" href="#" onclick="return doclink('link-290', 'cdd_record', 'link-290');">cdd_record</a></tt> <tt class="py-op">=</tt> <tt id="link-291" class="py-name"><a title="Bio.CDD.cdd_format.summary_line" class="py-name" href="#" onclick="return doclink('link-291', 'summary_line', 'link-35');">summary_line</a></tt> <tt class="py-op">+</tt> <tt id="link-292" class="py-name"><a title="Bio.CDD.cdd_format.cd_block" class="py-name" href="#" onclick="return doclink('link-292', 'cd_block', 'link-253');">cd_block</a></tt> <tt class="py-op">+</tt> <tt id="link-293" class="py-name"><a title="Bio.CDD.cdd_format.description_block
Bio.Std.description_block" class="py-name" href="#" onclick="return doclink('link-293', 'description_block', 'link-256');">description_block</a></tt> <tt class="py-op">+</tt> <tt id="link-294" class="py-name"><a title="Bio.CDD.cdd_format.status_block" class="py-name" href="#" onclick="return doclink('link-294', 'status_block', 'link-259');">status_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt id="link-295" class="py-name"><a title="Bio.CDD.cdd_format.source_block
Bio.expressions.genbank.source_block" class="py-name" href="#" onclick="return doclink('link-295', 'source_block', 'link-262');">source_block</a></tt> <tt class="py-op">+</tt> <tt id="link-296" class="py-name"><a title="Bio.CDD.cdd_format.date_block" class="py-name" href="#" onclick="return doclink('link-296', 'date_block', 'link-265');">date_block</a></tt> <tt class="py-op">+</tt> <tt id="link-297" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-297', 'Opt', 'link-14');">Opt</a></tt><tt class="py-op">(</tt> <tt id="link-298" class="py-name"><a title="Bio.CDD.cdd_format.reference_block" class="py-name" href="#" onclick="return doclink('link-298', 'reference_block', 'link-268');">reference_block</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-299" class="py-name"><a title="Bio.CDD.cdd_format.taxonomy_block" class="py-name" href="#" onclick="return doclink('link-299', 'taxonomy_block', 'link-273');">taxonomy_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt id="link-300" class="py-name"><a title="Bio.CDD.cdd_format.aligned_block" class="py-name" href="#" onclick="return doclink('link-300', 'aligned_block', 'link-276');">aligned_block</a></tt> <tt class="py-op">+</tt> <tt id="link-301" class="py-name"><a title="Bio.CDD.cdd_format.representative_block" class="py-name" href="#" onclick="return doclink('link-301', 'representative_block', 'link-279');">representative_block</a></tt> <tt class="py-op">+</tt> <tt id="link-302" class="py-name"><a title="Bio.CDD.cdd_format.range_block" class="py-name" href="#" onclick="return doclink('link-302', 'range_block', 'link-282');">range_block</a></tt> <tt class="py-op">+</tt> <tt id="link-303" class="py-name"><a title="Bio.CDD.cdd_format.sequence_block
Bio.NBRF.nbrf_format.sequence_block
Bio.Std.sequence_block" class="py-name" href="#" onclick="return doclink('link-303', 'sequence_block', 'link-285');">sequence_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt id="link-304" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-304', 'Rep', 'link-16');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-305" class="py-name"><a title="Bio.CDD.cdd_format.boiler_plate" class="py-name" href="#" onclick="return doclink('link-305', 'boiler_plate', 'link-181');">boiler_plate</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-306" class="py-name"><a title="Bio.CDD.cdd_format.sentinel_line" class="py-name" href="#" onclick="return doclink('link-306', 'sentinel_line', 'link-176');">sentinel_line</a></tt> <tt class="py-op">+</tt> <tt id="link-307" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-307', 'table', 'link-205');">table</a></tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt><script type="text/javascript">
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