<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.formatdefs.swissprot</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.formatdefs-module.html">Package formatdefs</a> :: Module swissprot </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.formatdefs.swissprot-pysrc.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <h1 class="epydoc">Source Code for <a href="Bio.formatdefs.swissprot-module.html">Module Bio.formatdefs.swissprot</a></h1> <pre class="py-src"> <a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Define the various SWISS-PROT formats</tt> </tt> <a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt> <a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Package Bio.config=Bio.config-module.html"><a title="Bio.config" class="py-name" href="#" onclick="return doclink('link-1', 'config', 'link-1');">config</a></tt><tt class="py-op">.</tt><tt id="link-2" class="py-name" targets="Module Bio.config.FormatRegistry=Bio.config.FormatRegistry-module.html,Class Bio.config.FormatRegistry.FormatRegistry=Bio.config.FormatRegistry.FormatRegistry-class.html"><a title="Bio.config.FormatRegistry Bio.config.FormatRegistry.FormatRegistry" class="py-name" href="#" onclick="return doclink('link-2', 'FormatRegistry', 'link-2');">FormatRegistry</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name" targets="Class Bio.config.FormatRegistry.FormatObject=Bio.config.FormatRegistry.FormatObject-class.html"><a title="Bio.config.FormatRegistry.FormatObject" class="py-name" href="#" onclick="return doclink('link-3', 'FormatObject', 'link-3');">FormatObject</a></tt><tt class="py-op">,</tt> <tt id="link-4" class="py-name" targets="Class Bio.config.FormatRegistry.FormatGroup=Bio.config.FormatRegistry.FormatGroup-class.html"><a title="Bio.config.FormatRegistry.FormatGroup" class="py-name" href="#" onclick="return doclink('link-4', 'FormatGroup', 'link-4');">FormatGroup</a></tt> </tt> <a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"> </tt> <a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"> </tt> <a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Module Bio.expressions.swissprot.sprot38=Bio.expressions.swissprot.sprot38-module.html,Variable Bio.formatdefs.swissprot.sprot38=Bio.formatdefs.swissprot-module.html#sprot38"><a title="Bio.expressions.swissprot.sprot38 Bio.formatdefs.swissprot.sprot38" class="py-name" href="#" onclick="return doclink('link-5', 'sprot38', 'link-5');">sprot38</a></tt> <tt class="py-op">=</tt> <tt id="link-6" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject" class="py-name" href="#" onclick="return doclink('link-6', 'FormatObject', 'link-3');">FormatObject</a></tt><tt class="py-op">(</tt> </tt> <a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.name=Bio.Encodings.IUPACEncoding-module.html#name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-7', 'name', 'link-7');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"swissprot/38"</tt><tt class="py-op">,</tt> </tt> <a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt class="py-name">abbrev</tt> <tt class="py-op">=</tt> <tt class="py-string">"sprot38"</tt><tt class="py-op">,</tt> </tt> <a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt class="py-name">expression</tt> <tt class="py-op">=</tt> <tt class="py-string">"Bio.expressions.swissprot.sprot38.format"</tt><tt class="py-op">,</tt> </tt> <a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-op">)</tt> </tt> <a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> </tt> <a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt id="link-8" class="py-name" targets="Module Bio.expressions.swissprot.sprot40=Bio.expressions.swissprot.sprot40-module.html,Variable Bio.formatdefs.swissprot.sprot40=Bio.formatdefs.swissprot-module.html#sprot40"><a title="Bio.expressions.swissprot.sprot40 Bio.formatdefs.swissprot.sprot40" class="py-name" href="#" onclick="return doclink('link-8', 'sprot40', 'link-8');">sprot40</a></tt> <tt class="py-op">=</tt> <tt id="link-9" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject" class="py-name" href="#" onclick="return doclink('link-9', 'FormatObject', 'link-3');">FormatObject</a></tt><tt class="py-op">(</tt> </tt> <a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> <tt id="link-10" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-10', 'name', 'link-7');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"swissprot/40"</tt><tt class="py-op">,</tt> </tt> <a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt class="py-name">abbrev</tt> <tt class="py-op">=</tt> <tt class="py-string">"sprot40"</tt><tt class="py-op">,</tt> </tt> <a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> <tt class="py-name">expression</tt> <tt class="py-op">=</tt> <tt class="py-string">"Bio.expressions.swissprot.sprot40.format"</tt><tt class="py-op">,</tt> </tt> <a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt class="py-op">)</tt> </tt> <a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> </tt> <a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Module Bio.expressions.swissprot.ipi=Bio.expressions.swissprot.ipi-module.html,Variable Bio.formatdefs.swissprot.ipi=Bio.formatdefs.swissprot-module.html#ipi"><a title="Bio.expressions.swissprot.ipi Bio.formatdefs.swissprot.ipi" class="py-name" href="#" onclick="return doclink('link-11', 'ipi', 'link-11');">ipi</a></tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name"><a title="Bio.config.FormatRegistry.FormatObject" class="py-name" href="#" onclick="return doclink('link-12', 'FormatObject', 'link-3');">FormatObject</a></tt><tt class="py-op">(</tt> </tt> <a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-13', 'name', 'link-7');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ipi"</tt><tt class="py-op">,</tt> </tt> <a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt class="py-name">abbrev</tt> <tt class="py-op">=</tt> <tt class="py-string">"ipi"</tt><tt class="py-op">,</tt> </tt> <a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-name">expression</tt> <tt class="py-op">=</tt> <tt class="py-string">"Bio.expressions.swissprot.ipi.format"</tt> </tt> <a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"><tt class="py-op">)</tt> </tt> <a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> </tt> <a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> </tt> <a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Module Bio.dbdefs.swissprot=Bio.dbdefs.swissprot-module.html,Variable Bio.dbdefs.swissprot.swissprot=Bio.dbdefs.swissprot-module.html#swissprot,Package Bio.expressions.swissprot=Bio.expressions.swissprot-module.html,Module Bio.formatdefs.swissprot=Bio.formatdefs.swissprot-module.html,Variable Bio.formatdefs.swissprot.swissprot=Bio.formatdefs.swissprot-module.html#swissprot"><a title="Bio.dbdefs.swissprot Bio.dbdefs.swissprot.swissprot Bio.expressions.swissprot Bio.formatdefs.swissprot Bio.formatdefs.swissprot.swissprot" class="py-name" href="#" onclick="return doclink('link-14', 'swissprot', 'link-14');">swissprot</a></tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="Bio.config.FormatRegistry.FormatGroup" class="py-name" href="#" onclick="return doclink('link-15', 'FormatGroup', 'link-4');">FormatGroup</a></tt><tt class="py-op">(</tt> </tt> <a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-16', 'name', 'link-7');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"swissprot"</tt><tt class="py-op">,</tt> </tt> <a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"><tt class="py-comment"># filter = "Bio.expressions.swissprot.filter",</tt> </tt> <a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"><tt class="py-op">)</tt> </tt> <a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"><tt id="link-17" class="py-name"><a title="Bio.dbdefs.swissprot Bio.dbdefs.swissprot.swissprot Bio.expressions.swissprot Bio.formatdefs.swissprot Bio.formatdefs.swissprot.swissprot" class="py-name" href="#" onclick="return doclink('link-17', 'swissprot', 'link-14');">swissprot</a></tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Variable Bio.Affy.CelFile.add=Bio.Affy.CelFile-module.html#add,Method Bio.EUtils.POM.ElementNode.add()=Bio.EUtils.POM.ElementNode-class.html#add,Method Bio.GFF.easy.Location.add()=Bio.GFF.easy.Location-class.html#add,Method Bio.Graphics.BasicChromosome._ChromosomeComponent.add()=Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add,Variable Bio.LogisticRegression.add=Bio.LogisticRegression-module.html#add,Variable Bio.MarkovModel.add=Bio.MarkovModel-module.html#add,Variable Bio.MaxEntropy.add=Bio.MaxEntropy-module.html#add,Variable Bio.NaiveBayes.add=Bio.NaiveBayes-module.html#add,Method Bio.Nexus.Nexus.StepMatrix.add()=Bio.Nexus.Nexus.StepMatrix-class.html#add,Method Bio.Nexus.Nodes.Chain.add()=Bio.Nexus.Nodes.Chain-class.html#add,Method Bio.PDB.Entity.Entity.add()=Bio.PDB.Entity.Entity-class.html#add,Method Bio.PDB.Residue.DisorderedResidue.add()=Bio.PDB.Residue.DisorderedResidue-class.html#add,Method Bio.PDB.Residue.Residue.add()=Bio.PDB.Residue.Residue-class.html#add,Method Bio.Pathway.Rep.HashSet.HashSet.add()=Bio.Pathway.Rep.HashSet.HashSet-class.html#add,Method Bio.Restriction.Restriction.RestrictionBatch.add()=Bio.Restriction.Restriction.RestrictionBatch-class.html#add,Variable Bio.Statistics.lowess.add=Bio.Statistics.lowess-module.html#add,Method Bio.config.FormatRegistry.FormatGroup.add()=Bio.config.FormatRegistry.FormatGroup-class.html#add,Method Bio.config.Registry.RegisterableGroup.add()=Bio.config.Registry.RegisterableGroup-class.html#add,Variable Bio.distance.add=Bio.distance-module.html#add,Variable Bio.kNN.add=Bio.kNN-module.html#add,Method Martel.Dispatch.MulticallEnd.add()=Martel.Dispatch.MulticallEnd-class.html#add,Method Martel.Dispatch.MulticallStart.add()=Martel.Dispatch.MulticallStart-class.html#add"><a title="Bio.Affy.CelFile.add Bio.EUtils.POM.ElementNode.add Bio.GFF.easy.Location.add Bio.Graphics.BasicChromosome._ChromosomeComponent.add Bio.LogisticRegression.add Bio.MarkovModel.add Bio.MaxEntropy.add Bio.NaiveBayes.add Bio.Nexus.Nexus.StepMatrix.add Bio.Nexus.Nodes.Chain.add Bio.PDB.Entity.Entity.add Bio.PDB.Residue.DisorderedResidue.add Bio.PDB.Residue.Residue.add Bio.Pathway.Rep.HashSet.HashSet.add Bio.Restriction.Restriction.RestrictionBatch.add Bio.Statistics.lowess.add Bio.config.FormatRegistry.FormatGroup.add Bio.config.Registry.RegisterableGroup.add Bio.distance.add Bio.kNN.add Martel.Dispatch.MulticallEnd.add Martel.Dispatch.MulticallStart.add" class="py-name" href="#" onclick="return doclink('link-18', 'add', 'link-18');">add</a></tt><tt class="py-op">(</tt><tt id="link-19" class="py-name"><a title="Bio.expressions.swissprot.sprot38 Bio.formatdefs.swissprot.sprot38" class="py-name" href="#" onclick="return doclink('link-19', 'sprot38', 'link-5');">sprot38</a></tt><tt class="py-op">)</tt> </tt> <a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt id="link-20" class="py-name"><a title="Bio.dbdefs.swissprot Bio.dbdefs.swissprot.swissprot Bio.expressions.swissprot Bio.formatdefs.swissprot Bio.formatdefs.swissprot.swissprot" class="py-name" href="#" onclick="return doclink('link-20', 'swissprot', 'link-14');">swissprot</a></tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method Bio.config.Registry.RegisterableGroup.add_before()=Bio.config.Registry.RegisterableGroup-class.html#add_before"><a title="Bio.config.Registry.RegisterableGroup.add_before" class="py-name" href="#" onclick="return doclink('link-21', 'add_before', 'link-21');">add_before</a></tt><tt class="py-op">(</tt><tt id="link-22" class="py-name"><a title="Bio.expressions.swissprot.sprot40 Bio.formatdefs.swissprot.sprot40" class="py-name" href="#" onclick="return doclink('link-22', 'sprot40', 'link-8');">sprot40</a></tt><tt class="py-op">,</tt> <tt id="link-23" class="py-name"><a title="Bio.expressions.swissprot.sprot38 Bio.formatdefs.swissprot.sprot38" class="py-name" href="#" onclick="return doclink('link-23', 'sprot38', 'link-5');">sprot38</a></tt><tt class="py-op">)</tt> </tt> <a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"><tt id="link-24" class="py-name"><a title="Bio.dbdefs.swissprot Bio.dbdefs.swissprot.swissprot Bio.expressions.swissprot Bio.formatdefs.swissprot Bio.formatdefs.swissprot.swissprot" class="py-name" href="#" onclick="return doclink('link-24', 'swissprot', 'link-14');">swissprot</a></tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="Bio.config.Registry.RegisterableGroup.add_before" class="py-name" href="#" onclick="return doclink('link-25', 'add_before', 'link-21');">add_before</a></tt><tt class="py-op">(</tt><tt id="link-26" class="py-name"><a title="Bio.expressions.swissprot.ipi Bio.formatdefs.swissprot.ipi" class="py-name" href="#" onclick="return doclink('link-26', 'ipi', 'link-11');">ipi</a></tt><tt class="py-op">,</tt> <tt id="link-27" class="py-name"><a title="Bio.expressions.swissprot.sprot40 Bio.formatdefs.swissprot.sprot40" class="py-name" href="#" onclick="return doclink('link-27', 'sprot40', 'link-8');">sprot40</a></tt><tt class="py-op">)</tt> </tt> <a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> </tt> <a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-28" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-28', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Package Bio.formatdefs=Bio.formatdefs-module.html"><a title="Bio.formatdefs" class="py-name" href="#" onclick="return doclink('link-29', 'formatdefs', 'link-29');">formatdefs</a></tt> <tt class="py-keyword">import</tt> <tt id="link-30" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.sequence()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence,Variable Bio.Emboss.primer3_format.sequence=Bio.Emboss.primer3_format-module.html#sequence,Method Bio.FSSP.FSSPAlignDict.sequence()=Bio.FSSP.FSSPAlignDict-class.html#sequence,Method Bio.GenBank._FeatureConsumer.sequence()=Bio.GenBank._FeatureConsumer-class.html#sequence,Method Bio.GenBank._RecordConsumer.sequence()=Bio.GenBank._RecordConsumer-class.html#sequence,Method Bio.IntelliGenetics._RecordConsumer.sequence()=Bio.IntelliGenetics._RecordConsumer-class.html#sequence,Method Bio.Rebase._RecordConsumer.sequence()=Bio.Rebase._RecordConsumer-class.html#sequence,Function Bio.Std.sequence()=Bio.Std-module.html#sequence,Module Bio.builders.SeqRecord.sequence=Bio.builders.SeqRecord.sequence-module.html,Variable Bio.expressions.fasta.sequence=Bio.expressions.fasta-module.html#sequence,Variable Bio.expressions.genbank.sequence=Bio.expressions.genbank-module.html#sequence,Variable Bio.expressions.swissprot.sprot38.sequence=Bio.expressions.swissprot.sprot38-module.html#sequence,Module Bio.formatdefs.sequence=Bio.formatdefs.sequence-module.html,Variable Bio.formatdefs.sequence.sequence=Bio.formatdefs.sequence-module.html#sequence,Variable Martel.test.test_swissprot38.sequence=Martel.test.test_swissprot38-module.html#sequence,Variable Martel.test.testformats.swissprot38.sequence=Martel.test.testformats.swissprot38-module.html#sequence"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence Bio.Emboss.primer3_format.sequence Bio.FSSP.FSSPAlignDict.sequence Bio.GenBank._FeatureConsumer.sequence Bio.GenBank._RecordConsumer.sequence Bio.IntelliGenetics._RecordConsumer.sequence Bio.Rebase._RecordConsumer.sequence Bio.Std.sequence Bio.builders.SeqRecord.sequence Bio.expressions.fasta.sequence Bio.expressions.genbank.sequence Bio.expressions.swissprot.sprot38.sequence Bio.formatdefs.sequence Bio.formatdefs.sequence.sequence Martel.test.test_swissprot38.sequence Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-30', 'sequence', 'link-30');">sequence</a></tt> </tt> <a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"><tt id="link-31" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence Bio.Emboss.primer3_format.sequence Bio.FSSP.FSSPAlignDict.sequence Bio.GenBank._FeatureConsumer.sequence Bio.GenBank._RecordConsumer.sequence Bio.IntelliGenetics._RecordConsumer.sequence Bio.Rebase._RecordConsumer.sequence Bio.Std.sequence Bio.builders.SeqRecord.sequence Bio.expressions.fasta.sequence Bio.expressions.genbank.sequence Bio.expressions.swissprot.sprot38.sequence Bio.formatdefs.sequence Bio.formatdefs.sequence.sequence Martel.test.test_swissprot38.sequence Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-31', 'sequence', 'link-30');">sequence</a></tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence Bio.Emboss.primer3_format.sequence Bio.FSSP.FSSPAlignDict.sequence Bio.GenBank._FeatureConsumer.sequence Bio.GenBank._RecordConsumer.sequence Bio.IntelliGenetics._RecordConsumer.sequence Bio.Rebase._RecordConsumer.sequence Bio.Std.sequence Bio.builders.SeqRecord.sequence Bio.expressions.fasta.sequence Bio.expressions.genbank.sequence Bio.expressions.swissprot.sprot38.sequence Bio.formatdefs.sequence Bio.formatdefs.sequence.sequence Martel.test.test_swissprot38.sequence Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-32', 'sequence', 'link-30');">sequence</a></tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="Bio.Affy.CelFile.add Bio.EUtils.POM.ElementNode.add Bio.GFF.easy.Location.add Bio.Graphics.BasicChromosome._ChromosomeComponent.add Bio.LogisticRegression.add Bio.MarkovModel.add Bio.MaxEntropy.add Bio.NaiveBayes.add Bio.Nexus.Nexus.StepMatrix.add Bio.Nexus.Nodes.Chain.add Bio.PDB.Entity.Entity.add Bio.PDB.Residue.DisorderedResidue.add Bio.PDB.Residue.Residue.add Bio.Pathway.Rep.HashSet.HashSet.add Bio.Restriction.Restriction.RestrictionBatch.add Bio.Statistics.lowess.add Bio.config.FormatRegistry.FormatGroup.add Bio.config.Registry.RegisterableGroup.add Bio.distance.add Bio.kNN.add Martel.Dispatch.MulticallEnd.add Martel.Dispatch.MulticallStart.add" class="py-name" href="#" onclick="return doclink('link-33', 'add', 'link-18');">add</a></tt><tt class="py-op">(</tt><tt id="link-34" class="py-name"><a title="Bio.dbdefs.swissprot Bio.dbdefs.swissprot.swissprot Bio.expressions.swissprot Bio.formatdefs.swissprot Bio.formatdefs.swissprot.swissprot" class="py-name" href="#" onclick="return doclink('link-34', 'swissprot', 'link-14');">swissprot</a></tt><tt class="py-op">)</tt> </tt> <a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> </tt><script type="text/javascript"> <!-- expandto(location.href); // --> </script> </pre> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:28:08 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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