<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Bio.formatdefs.search</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.formatdefs-module.html">Package formatdefs</a> ::
Module search
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Bio.formatdefs.search-module.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module search</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.formatdefs.search-pysrc.html">source code</a></span></p>
<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Variables</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-Variables"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="search"></a><span class="summary-name">search</span> = <code title="FormatGroup(name= "search", multirecord= 0,)">FormatGroup(name= "search", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#blast" class="summary-name">blast</a> = <code title="FormatGroup(name= "blast", filter= "Bio.expressions.blast.ncbiblast.bl\
ast_filter", multirecord= 0,)">FormatGroup(name= "blast", filter= "Bio.expressions.bl<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="blastp"></a><span class="summary-name">blastp</span> = <code title="FormatGroup(name= "blastp", multirecord= 0,)">FormatGroup(name= "blastp", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="blastn"></a><span class="summary-name">blastn</span> = <code title="FormatGroup(name= "blastn", multirecord= 0,)">FormatGroup(name= "blastn", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="blastx"></a><span class="summary-name">blastx</span> = <code title="FormatGroup(name= "blastx", multirecord= 0,)">FormatGroup(name= "blastx", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="tblastn"></a><span class="summary-name">tblastn</span> = <code title="FormatGroup(name= "tblastn", multirecord= 0,)">FormatGroup(name= "tblastn", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="tblastx"></a><span class="summary-name">tblastx</span> = <code title="FormatGroup(name= "tblastx", multirecord= 0,)">FormatGroup(name= "tblastx", multirecord= 0,)</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#ncbi_blastp" class="summary-name">ncbi_blastp</a> = <code title="FormatObject(name= "ncbi-blastp", abbrev= "ncbi_blastp", expression= "\
Bio.expressions.blast.ncbiblast.blastp", filter= "Bio.expressions.blas\
t.ncbiblast.blastp_appheader", multirecord= 0,)">FormatObject(name= "ncbi-blastp", abbrev= "ncbi_<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#ncbi_blastn" class="summary-name">ncbi_blastn</a> = <code title="FormatObject(name= "ncbi-blastn", abbrev= "ncbi_blastn", expression= "\
Bio.expressions.blast.ncbiblast.blastn", filter= "Bio.expressions.blas\
t.ncbiblast.blastn_appheader", multirecord= 0,)">FormatObject(name= "ncbi-blastn", abbrev= "ncbi_<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#ncbi_blastx" class="summary-name">ncbi_blastx</a> = <code title="FormatObject(name= "ncbi-blastx", abbrev= "ncbi_blastx", expression= "\
Bio.expressions.blast.ncbiblast.blastx", filter= "Bio.expressions.blas\
t.ncbiblast.blastx_appheader", multirecord= 0,)">FormatObject(name= "ncbi-blastx", abbrev= "ncbi_<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#ncbi_tblastn" class="summary-name">ncbi_tblastn</a> = <code title="FormatObject(name= "ncbi-tblastn", abbrev= "ncbi_tblastn", expression=\
"Bio.expressions.blast.ncbiblast.tblastn", filter= "Bio.expressions.b\
last.ncbiblast.tblastn_appheader", multirecord= 0,)">FormatObject(name= "ncbi-tblastn", abbrev= "ncb<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#ncbi_tblastx" class="summary-name">ncbi_tblastx</a> = <code title="FormatObject(name= "ncbi-tblastx", abbrev= "ncbi_tblastx", expression=\
"Bio.expressions.blast.ncbiblast.tblastx", filter= "Bio.expressions.b\
last.ncbiblast.tblastx_appheader", multirecord= 0,)">FormatObject(name= "ncbi-tblastx", abbrev= "ncb<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#wu_blastp" class="summary-name">wu_blastp</a> = <code title="FormatObject(name= "wu-blastp", abbrev= "wu_blastp", expression= "Bio.\
expressions.blast.wublast.blastp", filter= "Bio.expressions.blast.wubl\
ast.blastp_appheader", multirecord= 0,)">FormatObject(name= "wu-blastp", abbrev= "wu_blastp<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#wu_blastn" class="summary-name">wu_blastn</a> = <code title="FormatObject(name= "wu-blastn", abbrev= "wu_blastn", expression= "Bio.\
expressions.blast.wublast.blastn", filter= "Bio.expressions.blast.wubl\
ast.blastn_appheader", multirecord= 0,)">FormatObject(name= "wu-blastn", abbrev= "wu_blastn<code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.formatdefs.search-module.html#wu_blastx" class="summary-name">wu_blastx</a> = <code title="FormatObject(name= "wu-blastx", abbrev= "wu_blastx", expression= "Bio.\
expressions.blast.wublast.blastx", filter= "Bio.expressions.blast.wubl\
ast.blastx_appheader", multirecord= 0,)">FormatObject(name= "wu-blastx", abbrev= "wu_blastx<code class="variable-ellipsis">...</code></code>
</td>
</tr>
</table>
<!-- ==================== VARIABLES DETAILS ==================== -->
<a name="section-VariablesDetails"></a>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Variables Details</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-VariablesDetails"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
</table>
<a name="blast"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">blast</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatGroup(name= "blast", filter= "Bio.expressions.blast.ncbiblast.bl<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ast_filter", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="ncbi_blastp"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">ncbi_blastp</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "ncbi-blastp", abbrev= "ncbi_blastp", expression= "<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Bio.expressions.blast.ncbiblast.blastp", filter= "Bio.expressions.blas<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
t.ncbiblast.blastp_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="ncbi_blastn"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">ncbi_blastn</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "ncbi-blastn", abbrev= "ncbi_blastn", expression= "<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Bio.expressions.blast.ncbiblast.blastn", filter= "Bio.expressions.blas<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
t.ncbiblast.blastn_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="ncbi_blastx"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">ncbi_blastx</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "ncbi-blastx", abbrev= "ncbi_blastx", expression= "<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Bio.expressions.blast.ncbiblast.blastx", filter= "Bio.expressions.blas<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
t.ncbiblast.blastx_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="ncbi_tblastn"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">ncbi_tblastn</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "ncbi-tblastn", abbrev= "ncbi_tblastn", expression=<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
"Bio.expressions.blast.ncbiblast.tblastn", filter= "Bio.expressions.b<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
last.ncbiblast.tblastn_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="ncbi_tblastx"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">ncbi_tblastx</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "ncbi-tblastx", abbrev= "ncbi_tblastx", expression=<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
"Bio.expressions.blast.ncbiblast.tblastx", filter= "Bio.expressions.b<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
last.ncbiblast.tblastx_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="wu_blastp"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">wu_blastp</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "wu-blastp", abbrev= "wu_blastp", expression= "Bio.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
expressions.blast.wublast.blastp", filter= "Bio.expressions.blast.wubl<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ast.blastp_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="wu_blastn"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">wu_blastn</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "wu-blastn", abbrev= "wu_blastn", expression= "Bio.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
expressions.blast.wublast.blastn", filter= "Bio.expressions.blast.wubl<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ast.blastn_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="wu_blastx"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">wu_blastx</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
FormatObject(name= "wu-blastx", abbrev= "wu_blastx", expression= "Bio.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
expressions.blast.wublast.blastx", filter= "Bio.expressions.blast.wubl<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ast.blastx_appheader", multirecord= 0,)
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:29 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
