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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.expressions-module.html">Package expressions</a> ::
<a href="Bio.expressions.swissprot-module.html">Package swissprot</a> ::
Module sprot38
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<h1 class="epydoc">Source Code for <a href="Bio.expressions.swissprot.sprot38-module.html">Module Bio.expressions.swissprot.sprot38</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""Parser for the SWISS-PROT 38 format.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">You probably want to use the variables 'record' (for a single record)</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">and 'format' (for a set of records).</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"Bio.expressions was deprecated, as it does not work with recent versions of mxTextTools. If you want to continue to use this module, please get in contact with the Biopython developers at biopython-dev@biopython.org to avoid permanent removal of this module from Biopython"</tt><tt class="py-op">,</tt> <tt class="py-name">DeprecationWarning</tt><tt class="py-op">)</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-1', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module Martel.RecordReader=Martel.RecordReader-module.html,Class Martel.RecordReader.RecordReader=Martel.RecordReader.RecordReader-class.html"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-2', 'RecordReader', 'link-2');">RecordReader</a></tt><tt class="py-op">,</tt> <tt id="link-3" class="py-name" targets="Module Martel.Time=Martel.Time-module.html"><a title="Martel.Time" class="py-name" href="#" onclick="return doclink('link-3', 'Time', 'link-3');">Time</a></tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-4', 'Bio', 'link-4');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Module Bio.Std=Bio.Std-module.html"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-5', 'Std', 'link-5');">Std</a></tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
<a name="Simple"></a><div id="Simple-def"><a name="L16"></a><tt class="py-lineno"> 16</tt> <a class="py-toggle" href="#" id="Simple-toggle" onclick="return toggle('Simple');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.expressions.swissprot.sprot38-module.html#Simple">Simple</a><tt class="py-op">(</tt><tt class="py-param">tag</tt><tt class="py-op">,</tt> <tt class="py-param">tag_data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Simple-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Simple-expanded"><a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-6" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-6', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-7', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt id="link-8" class="py-name" targets="Variable Martel.Time.tag=Martel.Time-module.html#tag"><a title="Martel.Time.tag" class="py-name" href="#" onclick="return doclink('link-8', 'tag', 'link-8');">tag</a></tt><tt class="py-op">,</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-9', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-10', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt id="link-11" class="py-name"><a title="Martel.Time.tag" class="py-name" href="#" onclick="return doclink('link-11', 'tag', 'link-8');">tag</a></tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt id="link-12" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-12', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-13', 'ToEol', 'link-13');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-name">tag_data</tt><tt class="py-op">)</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
</div><a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-comment">#--- ID</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Class Bio.EUtils.POM.ID=Bio.EUtils.POM.ID-class.html,Method Bio.UniGene._RecordConsumer.ID()=Bio.UniGene._RecordConsumer-class.html#ID,Variable Bio.expressions.blocks.ID=Bio.expressions.blocks-module.html#ID,Variable Bio.expressions.swissprot.sprot38.ID=Bio.expressions.swissprot.sprot38-module.html#ID,Variable Martel.test.test_swissprot38.ID=Martel.test.test_swissprot38-module.html#ID,Variable Martel.test.testformats.swissprot38.ID=Martel.test.testformats.swissprot38-module.html#ID"><a title="Bio.EUtils.POM.ID
Bio.UniGene._RecordConsumer.ID
Bio.expressions.blocks.ID
Bio.expressions.swissprot.sprot38.ID
Martel.test.test_swissprot38.ID
Martel.test.testformats.swissprot38.ID" class="py-name" href="#" onclick="return doclink('link-14', 'ID', 'link-14');">ID</a></tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-15', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-16', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"ID"</tt><tt class="py-op">,</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt id="link-17" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-17', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-18', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"ID "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt id="link-19" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-19', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Function Bio.Std.dbid()=Bio.Std-module.html#dbid"><a title="Bio.Std.dbid" class="py-name" href="#" onclick="return doclink('link-20', 'dbid', 'link-20');">dbid</a></tt><tt class="py-op">(</tt><tt id="link-21" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-21', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Function Martel.Word()=Martel-module.html#Word"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-22', 'Word', 'link-22');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"entry_name"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"primary"</tt><tt class="py-op">,</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-string">"dbname"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt id="link-23" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-23', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-24" class="py-name" targets="Function Martel.Spaces()=Martel-module.html#Spaces"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-24', 'Spaces', 'link-24');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt id="link-25" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-25', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-26', 'Word', 'link-22');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"data_class_table"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-27', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-28', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-29" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-29', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-30', 'Spaces', 'link-24');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt id="link-31" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-31', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-32', 'Word', 'link-22');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"molecule_type"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt id="link-33" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-33', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-34', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-35" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-35', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-36', 'Spaces', 'link-24');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt id="link-37" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-37', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-38" class="py-name" targets="Function Martel.Digits()=Martel-module.html#Digits"><a title="Martel.Digits" class="py-name" href="#" onclick="return doclink('link-38', 'Digits', 'link-38');">Digits</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_length"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt id="link-39" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-39', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-40', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" AA."</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt id="link-41" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-41', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-42', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-comment">#--- AC</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt id="link-43" class="py-name" targets="Variable Bio.expressions.blocks.AC=Bio.expressions.blocks-module.html#AC,Variable Bio.expressions.swissprot.sprot38.AC=Bio.expressions.swissprot.sprot38-module.html#AC,Variable Martel.test.test_swissprot38.AC=Martel.test.test_swissprot38-module.html#AC,Variable Martel.test.testformats.swissprot38.AC=Martel.test.testformats.swissprot38-module.html#AC"><a title="Bio.expressions.blocks.AC
Bio.expressions.swissprot.sprot38.AC
Martel.test.test_swissprot38.AC
Martel.test.testformats.swissprot38.AC" class="py-name" href="#" onclick="return doclink('link-43', 'AC', 'link-43');">AC</a></tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-44', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-45', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"AC"</tt><tt class="py-op">,</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt id="link-46" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-46', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-47', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"AC "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt id="link-48" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-48', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Bio.Std.dbid" class="py-name" href="#" onclick="return doclink('link-49', 'dbid', 'link-20');">dbid</a></tt><tt class="py-op">(</tt><tt id="link-50" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-50', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-51', 'Word', 'link-22');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"ac_number"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"accession"</tt><tt class="py-op">,</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-string">"dbname"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt id="link-52" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-52', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-53', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt id="link-54" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-54', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-55', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-56" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-56', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-57', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt id="link-58" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-58', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="Bio.Std.dbid" class="py-name" href="#" onclick="return doclink('link-59', 'dbid', 'link-20');">dbid</a></tt><tt class="py-op">(</tt><tt id="link-60" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-60', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-61', 'Word', 'link-22');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"ac_number"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"accession"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-62', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-63', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt id="link-64" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-64', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-65', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt id="link-66" class="py-name" targets="Variable Bio.expressions.embl.embl65.AC_block=Bio.expressions.embl.embl65-module.html#AC_block,Variable Bio.expressions.swissprot.sprot38.AC_block=Bio.expressions.swissprot.sprot38-module.html#AC_block,Variable Martel.test.test_swissprot38.AC_block=Martel.test.test_swissprot38-module.html#AC_block,Variable Martel.test.testformats.swissprot38.AC_block=Martel.test.testformats.swissprot38-module.html#AC_block"><a title="Bio.expressions.embl.embl65.AC_block
Bio.expressions.swissprot.sprot38.AC_block
Martel.test.test_swissprot38.AC_block
Martel.test.testformats.swissprot38.AC_block" class="py-name" href="#" onclick="return doclink('link-66', 'AC_block', 'link-66');">AC_block</a></tt> <tt class="py-op">=</tt> <tt id="link-67" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-67', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-68', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"AC_block"</tt><tt class="py-op">,</tt> <tt id="link-69" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-69', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Function Martel.Rep1()=Martel-module.html#Rep1"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-70', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-71" class="py-name"><a title="Bio.expressions.blocks.AC
Bio.expressions.swissprot.sprot38.AC
Martel.test.test_swissprot38.AC
Martel.test.testformats.swissprot38.AC" class="py-name" href="#" onclick="return doclink('link-71', 'AC', 'link-43');">AC</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-comment">#--- DT</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-comment">##DT_created = Martel.Group("DT_created", Martel.Re(</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## r"DT (?P<day>\d\d)-(?P<month>...)-(?P<year>\d{4}) \(Rel. "\</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## r"(?P<release>\d\d), Created\)\R"</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## ))</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-72" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DT_created=Bio.expressions.swissprot.sprot38-module.html#DT_created,Variable Martel.test.test_swissprot38.DT_created=Martel.test.test_swissprot38-module.html#DT_created,Variable Martel.test.testformats.swissprot38.DT_created=Martel.test.testformats.swissprot38-module.html#DT_created"><a title="Bio.expressions.swissprot.sprot38.DT_created
Martel.test.test_swissprot38.DT_created
Martel.test.testformats.swissprot38.DT_created" class="py-name" href="#" onclick="return doclink('link-72', 'DT_created', 'link-72');">DT_created</a></tt> <tt class="py-op">=</tt> <tt id="link-73" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-73', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-74', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DT_created"</tt><tt class="py-op">,</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt id="link-75" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-75', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-76', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"DT "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt id="link-77" class="py-name"><a title="Martel.Time" class="py-name" href="#" onclick="return doclink('link-77', 'Time', 'link-3');">Time</a></tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Function Martel.Time.make_expression()=Martel.Time-module.html#make_expression,Function Martel.convert_re.make_expression()=Martel.convert_re-module.html#make_expression"><a title="Martel.Time.make_expression
Martel.convert_re.make_expression" class="py-name" href="#" onclick="return doclink('link-78', 'make_expression', 'link-78');">make_expression</a></tt><tt class="py-op">(</tt><tt class="py-string">"%(DD)-%(Jan)-%(YYYY)"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt id="link-79" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-79', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-80" class="py-name" targets="Function Martel.Re()=Martel-module.html#Re"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-80', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">" \(Rel. (?P<release>\d\d), Created\)\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt id="link-81" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DT_seq_update=Bio.expressions.swissprot.sprot38-module.html#DT_seq_update,Variable Martel.test.test_swissprot38.DT_seq_update=Martel.test.test_swissprot38-module.html#DT_seq_update,Variable Martel.test.testformats.swissprot38.DT_seq_update=Martel.test.testformats.swissprot38-module.html#DT_seq_update"><a title="Bio.expressions.swissprot.sprot38.DT_seq_update
Martel.test.test_swissprot38.DT_seq_update
Martel.test.testformats.swissprot38.DT_seq_update" class="py-name" href="#" onclick="return doclink('link-81', 'DT_seq_update', 'link-81');">DT_seq_update</a></tt> <tt class="py-op">=</tt> <tt id="link-82" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-82', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-83', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DT_seq_update"</tt><tt class="py-op">,</tt> <tt id="link-84" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-84', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-85', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-string">r"DT (?P<day>\d\d)-(?P<month>...)-(?P<year>\d{4}) \(Rel. "</tt>\ </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-string">r"(?P<release>\d\d), Last sequence update\)\R"</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt id="link-86" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DT_ann_update=Bio.expressions.swissprot.sprot38-module.html#DT_ann_update,Variable Martel.test.test_swissprot38.DT_ann_update=Martel.test.test_swissprot38-module.html#DT_ann_update,Variable Martel.test.testformats.swissprot38.DT_ann_update=Martel.test.testformats.swissprot38-module.html#DT_ann_update"><a title="Bio.expressions.swissprot.sprot38.DT_ann_update
Martel.test.test_swissprot38.DT_ann_update
Martel.test.testformats.swissprot38.DT_ann_update" class="py-name" href="#" onclick="return doclink('link-86', 'DT_ann_update', 'link-86');">DT_ann_update</a></tt> <tt class="py-op">=</tt> <tt id="link-87" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-87', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-88', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DT_ann_update"</tt><tt class="py-op">,</tt> <tt id="link-89" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-89', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-90', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-string">r"DT (?P<day>\d\d)-(?P<month>...)-(?P<year>\d{4}) \(Rel. "</tt>\ </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-string">r"(?P<release>\d\d), Last annotation update\)\R"</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt class="py-comment">#--- DE</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-comment"># Only the last DE is supposed to have a ".", but I don't see why *I*</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># need to enforce it.</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-91" class="py-name" targets="Variable Bio.expressions.blocks.DE=Bio.expressions.blocks-module.html#DE,Variable Bio.expressions.swissprot.sprot38.DE=Bio.expressions.swissprot.sprot38-module.html#DE,Variable Martel.test.test_swissprot38.DE=Martel.test.test_swissprot38-module.html#DE,Variable Martel.test.testformats.swissprot38.DE=Martel.test.testformats.swissprot38-module.html#DE"><a title="Bio.expressions.blocks.DE
Bio.expressions.swissprot.sprot38.DE
Martel.test.test_swissprot38.DE
Martel.test.testformats.swissprot38.DE" class="py-name" href="#" onclick="return doclink('link-91', 'DE', 'link-91');">DE</a></tt> <tt class="py-op">=</tt> <tt id="link-92" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-92', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-93', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DE"</tt><tt class="py-op">,</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt id="link-94" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-94', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-95', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"DE "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt id="link-96" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-96', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-97" class="py-name" targets="Method Bio.Blast.NCBIStandalone._DescriptionConsumer.description()=Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description,Method Bio.Enzyme._RecordConsumer.description()=Bio.Enzyme._RecordConsumer-class.html#description,Method Bio.Prosite._RecordConsumer.description()=Bio.Prosite._RecordConsumer-class.html#description,Function Bio.Std.description()=Bio.Std-module.html#description,Method Bio.SwissProt.SProt._RecordConsumer.description()=Bio.SwissProt.SProt._RecordConsumer-class.html#description,Method Bio.SwissProt.SProt._SequenceConsumer.description()=Bio.SwissProt.SProt._SequenceConsumer-class.html#description,Variable Martel.setup.run_local_tests.description=Martel.setup.run_local_tests-class.html#description"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-97', 'description', 'link-97');">description</a></tt><tt class="py-op">(</tt><tt id="link-98" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-98', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-99" class="py-name" targets="Function Martel.UntilEol()=Martel-module.html#UntilEol"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-99', 'UntilEol', 'link-99');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"description"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-100" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-100', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-101', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt id="link-102" class="py-name" targets="Variable Bio.expressions.embl.embl65.DE_block=Bio.expressions.embl.embl65-module.html#DE_block,Variable Bio.expressions.swissprot.sprot38.DE_block=Bio.expressions.swissprot.sprot38-module.html#DE_block,Variable Martel.test.test_swissprot38.DE_block=Martel.test.test_swissprot38-module.html#DE_block,Variable Martel.test.testformats.swissprot38.DE_block=Martel.test.testformats.swissprot38-module.html#DE_block"><a title="Bio.expressions.embl.embl65.DE_block
Bio.expressions.swissprot.sprot38.DE_block
Martel.test.test_swissprot38.DE_block
Martel.test.testformats.swissprot38.DE_block" class="py-name" href="#" onclick="return doclink('link-102', 'DE_block', 'link-102');">DE_block</a></tt> <tt class="py-op">=</tt> <tt id="link-103" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-103', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-104" class="py-name" targets="Variable Bio.CDD.cdd_format.description_block=Bio.CDD.cdd_format-module.html#description_block,Function Bio.Std.description_block()=Bio.Std-module.html#description_block"><a title="Bio.CDD.cdd_format.description_block
Bio.Std.description_block" class="py-name" href="#" onclick="return doclink('link-104', 'description_block', 'link-104');">description_block</a></tt><tt class="py-op">(</tt><tt id="link-105" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-105', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-106', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DE_block"</tt><tt class="py-op">,</tt> <tt id="link-107" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-107', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-108', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-109" class="py-name"><a title="Bio.expressions.blocks.DE
Bio.expressions.swissprot.sprot38.DE
Martel.test.test_swissprot38.DE
Martel.test.testformats.swissprot38.DE" class="py-name" href="#" onclick="return doclink('link-109', 'DE', 'link-91');">DE</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt class="py-comment">#--- GN</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt id="link-110" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.GN=Bio.expressions.swissprot.sprot38-module.html#GN,Variable Martel.test.test_swissprot38.GN=Martel.test.test_swissprot38-module.html#GN,Variable Martel.test.testformats.swissprot38.GN=Martel.test.testformats.swissprot38-module.html#GN"><a title="Bio.expressions.swissprot.sprot38.GN
Martel.test.test_swissprot38.GN
Martel.test.testformats.swissprot38.GN" class="py-name" href="#" onclick="return doclink('link-110', 'GN', 'link-110');">GN</a></tt> <tt class="py-op">=</tt> <tt id="link-111" class="py-name" targets="Module Bio.GA.Mutation.Simple=Bio.GA.Mutation.Simple-module.html,Function Bio.expressions.swissprot.sprot38.Simple()=Bio.expressions.swissprot.sprot38-module.html#Simple,Function Martel.test.testformats.swissprot38.Simple()=Martel.test.testformats.swissprot38-module.html#Simple"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-111', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"GN"</tt><tt class="py-op">,</tt> <tt class="py-string">"gene_names"</tt><tt class="py-op">)</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt id="link-112" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.GN_block=Bio.expressions.swissprot.sprot38-module.html#GN_block,Variable Martel.test.test_swissprot38.GN_block=Martel.test.test_swissprot38-module.html#GN_block,Variable Martel.test.testformats.swissprot38.GN_block=Martel.test.testformats.swissprot38-module.html#GN_block"><a title="Bio.expressions.swissprot.sprot38.GN_block
Martel.test.test_swissprot38.GN_block
Martel.test.testformats.swissprot38.GN_block" class="py-name" href="#" onclick="return doclink('link-112', 'GN_block', 'link-112');">GN_block</a></tt> <tt class="py-op">=</tt> <tt id="link-113" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-113', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-114', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"GN_block"</tt><tt class="py-op">,</tt> <tt id="link-115" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-115', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-116', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-117" class="py-name"><a title="Bio.expressions.swissprot.sprot38.GN
Martel.test.test_swissprot38.GN
Martel.test.testformats.swissprot38.GN" class="py-name" href="#" onclick="return doclink('link-117', 'GN', 'link-110');">GN</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt class="py-comment">#--- OS</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt id="link-118" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.OS=Bio.expressions.swissprot.sprot38-module.html#OS,Variable Martel.test.test_swissprot38.OS=Martel.test.test_swissprot38-module.html#OS,Variable Martel.test.testformats.swissprot38.OS=Martel.test.testformats.swissprot38-module.html#OS"><a title="Bio.expressions.swissprot.sprot38.OS
Martel.test.test_swissprot38.OS
Martel.test.testformats.swissprot38.OS" class="py-name" href="#" onclick="return doclink('link-118', 'OS', 'link-118');">OS</a></tt> <tt class="py-op">=</tt> <tt id="link-119" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-119', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"OS"</tt><tt class="py-op">,</tt> <tt class="py-string">"organism_species"</tt><tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt id="link-120" class="py-name" targets="Variable Bio.expressions.embl.embl65.OS_block=Bio.expressions.embl.embl65-module.html#OS_block,Variable Bio.expressions.swissprot.sprot38.OS_block=Bio.expressions.swissprot.sprot38-module.html#OS_block,Variable Martel.test.test_swissprot38.OS_block=Martel.test.test_swissprot38-module.html#OS_block,Variable Martel.test.testformats.swissprot38.OS_block=Martel.test.testformats.swissprot38-module.html#OS_block"><a title="Bio.expressions.embl.embl65.OS_block
Bio.expressions.swissprot.sprot38.OS_block
Martel.test.test_swissprot38.OS_block
Martel.test.testformats.swissprot38.OS_block" class="py-name" href="#" onclick="return doclink('link-120', 'OS_block', 'link-120');">OS_block</a></tt> <tt class="py-op">=</tt> <tt id="link-121" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-121', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-122', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"OS_block"</tt><tt class="py-op">,</tt> <tt id="link-123" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-123', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-124', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-125" class="py-name"><a title="Bio.expressions.swissprot.sprot38.OS
Martel.test.test_swissprot38.OS
Martel.test.testformats.swissprot38.OS" class="py-name" href="#" onclick="return doclink('link-125', 'OS', 'link-118');">OS</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt class="py-comment">#--- OG</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt id="link-126" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.OG=Bio.expressions.swissprot.sprot38-module.html#OG,Variable Martel.test.test_swissprot38.OG=Martel.test.test_swissprot38-module.html#OG,Variable Martel.test.testformats.swissprot38.OG=Martel.test.testformats.swissprot38-module.html#OG"><a title="Bio.expressions.swissprot.sprot38.OG
Martel.test.test_swissprot38.OG
Martel.test.testformats.swissprot38.OG" class="py-name" href="#" onclick="return doclink('link-126', 'OG', 'link-126');">OG</a></tt> <tt class="py-op">=</tt> <tt id="link-127" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-127', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"OG"</tt><tt class="py-op">,</tt> <tt class="py-string">"organelle"</tt><tt class="py-op">)</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt id="link-128" class="py-name" targets="Variable Bio.expressions.embl.embl65.OG_block=Bio.expressions.embl.embl65-module.html#OG_block,Variable Bio.expressions.swissprot.sprot38.OG_block=Bio.expressions.swissprot.sprot38-module.html#OG_block,Variable Martel.test.test_swissprot38.OG_block=Martel.test.test_swissprot38-module.html#OG_block,Variable Martel.test.testformats.swissprot38.OG_block=Martel.test.testformats.swissprot38-module.html#OG_block"><a title="Bio.expressions.embl.embl65.OG_block
Bio.expressions.swissprot.sprot38.OG_block
Martel.test.test_swissprot38.OG_block
Martel.test.testformats.swissprot38.OG_block" class="py-name" href="#" onclick="return doclink('link-128', 'OG_block', 'link-128');">OG_block</a></tt> <tt class="py-op">=</tt> <tt id="link-129" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-129', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-130', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"OG_block"</tt><tt class="py-op">,</tt> <tt id="link-131" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-131', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-132', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-133" class="py-name"><a title="Bio.expressions.swissprot.sprot38.OG
Martel.test.test_swissprot38.OG
Martel.test.testformats.swissprot38.OG" class="py-name" href="#" onclick="return doclink('link-133', 'OG', 'link-126');">OG</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"><tt class="py-comment">#--- OC</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt id="link-134" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.OC=Bio.expressions.swissprot.sprot38-module.html#OC,Variable Martel.test.test_swissprot38.OC=Martel.test.test_swissprot38-module.html#OC,Variable Martel.test.testformats.swissprot38.OC=Martel.test.testformats.swissprot38-module.html#OC"><a title="Bio.expressions.swissprot.sprot38.OC
Martel.test.test_swissprot38.OC
Martel.test.testformats.swissprot38.OC" class="py-name" href="#" onclick="return doclink('link-134', 'OC', 'link-134');">OC</a></tt> <tt class="py-op">=</tt> <tt id="link-135" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-135', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"OC"</tt><tt class="py-op">,</tt> <tt class="py-string">"organism_classification"</tt><tt class="py-op">)</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"><tt id="link-136" class="py-name" targets="Variable Bio.expressions.embl.embl65.OC_block=Bio.expressions.embl.embl65-module.html#OC_block,Variable Bio.expressions.swissprot.sprot38.OC_block=Bio.expressions.swissprot.sprot38-module.html#OC_block,Variable Martel.test.test_swissprot38.OC_block=Martel.test.test_swissprot38-module.html#OC_block,Variable Martel.test.testformats.swissprot38.OC_block=Martel.test.testformats.swissprot38-module.html#OC_block"><a title="Bio.expressions.embl.embl65.OC_block
Bio.expressions.swissprot.sprot38.OC_block
Martel.test.test_swissprot38.OC_block
Martel.test.testformats.swissprot38.OC_block" class="py-name" href="#" onclick="return doclink('link-136', 'OC_block', 'link-136');">OC_block</a></tt> <tt class="py-op">=</tt> <tt id="link-137" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-137', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-138', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"OC_block"</tt><tt class="py-op">,</tt> <tt id="link-139" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-139', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-140" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-140', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-141" class="py-name"><a title="Bio.expressions.swissprot.sprot38.OC
Martel.test.test_swissprot38.OC
Martel.test.testformats.swissprot38.OC" class="py-name" href="#" onclick="return doclink('link-141', 'OC', 'link-134');">OC</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"><tt class="py-comment">############ Reference section</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"><tt class="py-comment">#--- RN</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"><tt class="py-comment"># occurs once</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-142" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RN=Bio.expressions.swissprot.sprot38-module.html#RN,Variable Martel.test.test_swissprot38.RN=Martel.test.test_swissprot38-module.html#RN,Variable Martel.test.testformats.swissprot38.RN=Martel.test.testformats.swissprot38-module.html#RN"><a title="Bio.expressions.swissprot.sprot38.RN
Martel.test.test_swissprot38.RN
Martel.test.testformats.swissprot38.RN" class="py-name" href="#" onclick="return doclink('link-142', 'RN', 'link-142');">RN</a></tt> <tt class="py-op">=</tt> <tt id="link-143" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-143', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-144', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RN"</tt><tt class="py-op">,</tt> <tt id="link-145" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-145', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-146" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-146', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"RN \[(?P<reference_number>\d+)]\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-comment">#--- RP</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-comment"># occurs once</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-147" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RP=Bio.expressions.swissprot.sprot38-module.html#RP,Variable Martel.test.test_swissprot38.RP=Martel.test.test_swissprot38-module.html#RP,Variable Martel.test.testformats.swissprot38.RP=Martel.test.testformats.swissprot38-module.html#RP"><a title="Bio.expressions.swissprot.sprot38.RP
Martel.test.test_swissprot38.RP
Martel.test.testformats.swissprot38.RP" class="py-name" href="#" onclick="return doclink('link-147', 'RP', 'link-147');">RP</a></tt> <tt class="py-op">=</tt> <tt id="link-148" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-148', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"RP"</tt><tt class="py-op">,</tt> <tt class="py-string">"reference_position"</tt><tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"><tt class="py-comment">#--- RC</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt class="py-comment"># 0 or more</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-149" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RC=Bio.expressions.swissprot.sprot38-module.html#RC,Variable Martel.test.test_swissprot38.RC=Martel.test.test_swissprot38-module.html#RC,Variable Martel.test.testformats.swissprot38.RC=Martel.test.testformats.swissprot38-module.html#RC"><a title="Bio.expressions.swissprot.sprot38.RC
Martel.test.test_swissprot38.RC
Martel.test.testformats.swissprot38.RC" class="py-name" href="#" onclick="return doclink('link-149', 'RC', 'link-149');">RC</a></tt> <tt class="py-op">=</tt> <tt id="link-150" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-150', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"RC"</tt><tt class="py-op">,</tt> <tt class="py-string">"reference_comment"</tt><tt class="py-op">)</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"><tt id="link-151" class="py-name" targets="Variable Bio.expressions.embl.embl65.RC_block=Bio.expressions.embl.embl65-module.html#RC_block,Variable Bio.expressions.swissprot.sprot38.RC_block=Bio.expressions.swissprot.sprot38-module.html#RC_block,Variable Martel.test.test_swissprot38.RC_block=Martel.test.test_swissprot38-module.html#RC_block,Variable Martel.test.testformats.swissprot38.RC_block=Martel.test.testformats.swissprot38-module.html#RC_block"><a title="Bio.expressions.embl.embl65.RC_block
Bio.expressions.swissprot.sprot38.RC_block
Martel.test.test_swissprot38.RC_block
Martel.test.testformats.swissprot38.RC_block" class="py-name" href="#" onclick="return doclink('link-151', 'RC_block', 'link-151');">RC_block</a></tt> <tt class="py-op">=</tt> <tt id="link-152" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-152', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-153', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RC_block"</tt><tt class="py-op">,</tt> <tt id="link-154" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-154', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-155', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-156" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RC
Martel.test.test_swissprot38.RC
Martel.test.testformats.swissprot38.RC" class="py-name" href="#" onclick="return doclink('link-156', 'RC', 'link-149');">RC</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-comment">#--- RX</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt class="py-comment"># 0 or 1</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-157" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RX=Bio.expressions.swissprot.sprot38-module.html#RX,Variable Martel.test.test_swissprot38.RX=Martel.test.test_swissprot38-module.html#RX,Variable Martel.test.testformats.swissprot38.RX=Martel.test.testformats.swissprot38-module.html#RX"><a title="Bio.expressions.swissprot.sprot38.RX
Martel.test.test_swissprot38.RX
Martel.test.testformats.swissprot38.RX" class="py-name" href="#" onclick="return doclink('link-157', 'RX', 'link-157');">RX</a></tt> <tt class="py-op">=</tt> <tt id="link-158" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-158', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-159" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-159', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RX"</tt><tt class="py-op">,</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt id="link-160" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-160', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-161', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"RX (?P<bibliographic_database_name>\w+); "</tt> \ </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-string">"(?P<bibliographic_identifier>\d+)\.\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-comment">#--- RA</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt class="py-comment"># 1 or more</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-162" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RA=Bio.expressions.swissprot.sprot38-module.html#RA,Variable Martel.test.test_swissprot38.RA=Martel.test.test_swissprot38-module.html#RA,Variable Martel.test.testformats.swissprot38.RA=Martel.test.testformats.swissprot38-module.html#RA"><a title="Bio.expressions.swissprot.sprot38.RA
Martel.test.test_swissprot38.RA
Martel.test.testformats.swissprot38.RA" class="py-name" href="#" onclick="return doclink('link-162', 'RA', 'link-162');">RA</a></tt> <tt class="py-op">=</tt> <tt id="link-163" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-163', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"RA"</tt><tt class="py-op">,</tt> <tt class="py-string">"reference_author"</tt><tt class="py-op">)</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt id="link-164" class="py-name" targets="Variable Bio.expressions.embl.embl65.RA_block=Bio.expressions.embl.embl65-module.html#RA_block,Variable Bio.expressions.swissprot.sprot38.RA_block=Bio.expressions.swissprot.sprot38-module.html#RA_block,Variable Martel.test.test_swissprot38.RA_block=Martel.test.test_swissprot38-module.html#RA_block,Variable Martel.test.testformats.swissprot38.RA_block=Martel.test.testformats.swissprot38-module.html#RA_block"><a title="Bio.expressions.embl.embl65.RA_block
Bio.expressions.swissprot.sprot38.RA_block
Martel.test.test_swissprot38.RA_block
Martel.test.testformats.swissprot38.RA_block" class="py-name" href="#" onclick="return doclink('link-164', 'RA_block', 'link-164');">RA_block</a></tt> <tt class="py-op">=</tt> <tt id="link-165" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-165', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-166" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-166', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RA_block"</tt><tt class="py-op">,</tt> <tt id="link-167" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-167', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-168', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-169" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RA
Martel.test.test_swissprot38.RA
Martel.test.testformats.swissprot38.RA" class="py-name" href="#" onclick="return doclink('link-169', 'RA', 'link-162');">RA</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-comment">#--- RT</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"><tt class="py-comment"># 0 or more</tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-170" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RT=Bio.expressions.swissprot.sprot38-module.html#RT,Variable Martel.test.test_swissprot38.RT=Martel.test.test_swissprot38-module.html#RT,Variable Martel.test.testformats.swissprot38.RT=Martel.test.testformats.swissprot38-module.html#RT"><a title="Bio.expressions.swissprot.sprot38.RT
Martel.test.test_swissprot38.RT
Martel.test.testformats.swissprot38.RT" class="py-name" href="#" onclick="return doclink('link-170', 'RT', 'link-170');">RT</a></tt> <tt class="py-op">=</tt> <tt id="link-171" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-171', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"RT"</tt><tt class="py-op">,</tt> <tt class="py-string">"reference_title"</tt><tt class="py-op">)</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt id="link-172" class="py-name" targets="Variable Bio.expressions.embl.embl65.RT_block=Bio.expressions.embl.embl65-module.html#RT_block,Variable Bio.expressions.swissprot.sprot38.RT_block=Bio.expressions.swissprot.sprot38-module.html#RT_block,Variable Martel.test.test_swissprot38.RT_block=Martel.test.test_swissprot38-module.html#RT_block,Variable Martel.test.testformats.swissprot38.RT_block=Martel.test.testformats.swissprot38-module.html#RT_block"><a title="Bio.expressions.embl.embl65.RT_block
Bio.expressions.swissprot.sprot38.RT_block
Martel.test.test_swissprot38.RT_block
Martel.test.testformats.swissprot38.RT_block" class="py-name" href="#" onclick="return doclink('link-172', 'RT_block', 'link-172');">RT_block</a></tt> <tt class="py-op">=</tt> <tt id="link-173" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-173', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-174', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RT_block"</tt><tt class="py-op">,</tt> <tt id="link-175" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-175', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-176', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-177" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RT
Martel.test.test_swissprot38.RT
Martel.test.testformats.swissprot38.RT" class="py-name" href="#" onclick="return doclink('link-177', 'RT', 'link-170');">RT</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-comment">#--- RL</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-comment"># 1 or more</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"><tt id="link-178" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.RL=Bio.expressions.swissprot.sprot38-module.html#RL,Variable Martel.test.test_swissprot38.RL=Martel.test.test_swissprot38-module.html#RL,Variable Martel.test.testformats.swissprot38.RL=Martel.test.testformats.swissprot38-module.html#RL"><a title="Bio.expressions.swissprot.sprot38.RL
Martel.test.test_swissprot38.RL
Martel.test.testformats.swissprot38.RL" class="py-name" href="#" onclick="return doclink('link-178', 'RL', 'link-178');">RL</a></tt> <tt class="py-op">=</tt> <tt id="link-179" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-179', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"RL"</tt><tt class="py-op">,</tt> <tt class="py-string">"reference_location"</tt><tt class="py-op">)</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt id="link-180" class="py-name" targets="Variable Bio.expressions.embl.embl65.RL_block=Bio.expressions.embl.embl65-module.html#RL_block,Variable Bio.expressions.swissprot.sprot38.RL_block=Bio.expressions.swissprot.sprot38-module.html#RL_block,Variable Martel.test.test_swissprot38.RL_block=Martel.test.test_swissprot38-module.html#RL_block,Variable Martel.test.testformats.swissprot38.RL_block=Martel.test.testformats.swissprot38-module.html#RL_block"><a title="Bio.expressions.embl.embl65.RL_block
Bio.expressions.swissprot.sprot38.RL_block
Martel.test.test_swissprot38.RL_block
Martel.test.testformats.swissprot38.RL_block" class="py-name" href="#" onclick="return doclink('link-180', 'RL_block', 'link-180');">RL_block</a></tt> <tt class="py-op">=</tt> <tt id="link-181" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-181', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-182" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-182', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"RL_block"</tt><tt class="py-op">,</tt> <tt id="link-183" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-183', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-184', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-185" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RL
Martel.test.test_swissprot38.RL
Martel.test.testformats.swissprot38.RL" class="py-name" href="#" onclick="return doclink('link-185', 'RL', 'link-178');">RL</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"><tt id="link-186" class="py-name" targets="Method Bio.Blast.NCBIStandalone._HeaderConsumer.reference()=Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference,Method Bio.Prosite.Prodoc._RecordConsumer.reference()=Bio.Prosite.Prodoc._RecordConsumer-class.html#reference,Variable Bio.expressions.embl.embl65.reference=Bio.expressions.embl.embl65-module.html#reference,Variable Bio.expressions.genbank.reference=Bio.expressions.genbank-module.html#reference,Variable Bio.expressions.swissprot.sprot38.reference=Bio.expressions.swissprot.sprot38-module.html#reference,Variable Martel.test.test_swissprot38.reference=Martel.test.test_swissprot38-module.html#reference,Variable Martel.test.testformats.swissprot38.reference=Martel.test.testformats.swissprot38-module.html#reference"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-186', 'reference', 'link-186');">reference</a></tt> <tt class="py-op">=</tt> <tt id="link-187" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-187', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-188', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference"</tt><tt class="py-op">,</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt id="link-189" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RN
Martel.test.test_swissprot38.RN
Martel.test.testformats.swissprot38.RN" class="py-name" href="#" onclick="return doclink('link-189', 'RN', 'link-142');">RN</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt id="link-190" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RP
Martel.test.test_swissprot38.RP
Martel.test.testformats.swissprot38.RP" class="py-name" href="#" onclick="return doclink('link-190', 'RP', 'link-147');">RP</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt id="link-191" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-191', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-192" class="py-name" targets="Function Martel.Opt()=Martel-module.html#Opt"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-192', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-193" class="py-name"><a title="Bio.expressions.embl.embl65.RC_block
Bio.expressions.swissprot.sprot38.RC_block
Martel.test.test_swissprot38.RC_block
Martel.test.testformats.swissprot38.RC_block" class="py-name" href="#" onclick="return doclink('link-193', 'RC_block', 'link-151');">RC_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt id="link-194" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-194', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-195', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-196" class="py-name"><a title="Bio.expressions.swissprot.sprot38.RX
Martel.test.test_swissprot38.RX
Martel.test.testformats.swissprot38.RX" class="py-name" href="#" onclick="return doclink('link-196', 'RX', 'link-157');">RX</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt id="link-197" class="py-name"><a title="Bio.expressions.embl.embl65.RA_block
Bio.expressions.swissprot.sprot38.RA_block
Martel.test.test_swissprot38.RA_block
Martel.test.testformats.swissprot38.RA_block" class="py-name" href="#" onclick="return doclink('link-197', 'RA_block', 'link-164');">RA_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt id="link-198" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-198', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-199', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-200" class="py-name"><a title="Bio.expressions.embl.embl65.RT_block
Bio.expressions.swissprot.sprot38.RT_block
Martel.test.test_swissprot38.RT_block
Martel.test.testformats.swissprot38.RT_block" class="py-name" href="#" onclick="return doclink('link-200', 'RT_block', 'link-172');">RT_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt id="link-201" class="py-name"><a title="Bio.expressions.embl.embl65.RL_block
Bio.expressions.swissprot.sprot38.RL_block
Martel.test.test_swissprot38.RL_block
Martel.test.testformats.swissprot38.RL_block" class="py-name" href="#" onclick="return doclink('link-201', 'RL_block', 'link-180');">RL_block</a></tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"><tt class="py-comment">############</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"><tt class="py-comment">#--- CC</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"><tt id="link-202" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.CC_begin=Bio.expressions.swissprot.sprot38-module.html#CC_begin,Variable Martel.test.test_swissprot38.CC_begin=Martel.test.test_swissprot38-module.html#CC_begin,Variable Martel.test.testformats.swissprot38.CC_begin=Martel.test.testformats.swissprot38-module.html#CC_begin"><a title="Bio.expressions.swissprot.sprot38.CC_begin
Martel.test.test_swissprot38.CC_begin
Martel.test.testformats.swissprot38.CC_begin" class="py-name" href="#" onclick="return doclink('link-202', 'CC_begin', 'link-202');">CC_begin</a></tt> <tt class="py-op">=</tt> <tt id="link-203" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-203', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-204', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC"</tt><tt class="py-op">,</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt id="link-205" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-205', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-206', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC -!- "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt id="link-207" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-207', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-208" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-208', 'ToEol', 'link-13');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"comment_text"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"><tt id="link-209" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.CC=Bio.expressions.swissprot.sprot38-module.html#CC,Variable Martel.test.test_swissprot38.CC=Martel.test.test_swissprot38-module.html#CC,Variable Martel.test.testformats.swissprot38.CC=Martel.test.testformats.swissprot38-module.html#CC"><a title="Bio.expressions.swissprot.sprot38.CC
Martel.test.test_swissprot38.CC
Martel.test.testformats.swissprot38.CC" class="py-name" href="#" onclick="return doclink('link-209', 'CC', 'link-209');">CC</a></tt> <tt class="py-op">=</tt> <tt id="link-210" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-210', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-211" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-211', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC"</tt><tt class="py-op">,</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt id="link-212" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-212', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-213" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-213', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt id="link-214" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-214', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-215', 'ToEol', 'link-13');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"comment_text"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"><tt id="link-216" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.single_comment=Bio.expressions.swissprot.sprot38-module.html#single_comment,Variable Martel.test.test_swissprot38.single_comment=Martel.test.test_swissprot38-module.html#single_comment,Variable Martel.test.testformats.swissprot38.single_comment=Martel.test.testformats.swissprot38-module.html#single_comment"><a title="Bio.expressions.swissprot.sprot38.single_comment
Martel.test.test_swissprot38.single_comment
Martel.test.testformats.swissprot38.single_comment" class="py-name" href="#" onclick="return doclink('link-216', 'single_comment', 'link-216');">single_comment</a></tt> <tt class="py-op">=</tt> <tt id="link-217" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-217', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-218" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-218', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"comment"</tt><tt class="py-op">,</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt id="link-219" class="py-name"><a title="Bio.expressions.swissprot.sprot38.CC_begin
Martel.test.test_swissprot38.CC_begin
Martel.test.testformats.swissprot38.CC_begin" class="py-name" href="#" onclick="return doclink('link-219', 'CC_begin', 'link-202');">CC_begin</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt id="link-220" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-220', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-221', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-222" class="py-name"><a title="Bio.expressions.swissprot.sprot38.CC
Martel.test.test_swissprot38.CC
Martel.test.testformats.swissprot38.CC" class="py-name" href="#" onclick="return doclink('link-222', 'CC', 'link-209');">CC</a></tt><tt class="py-op">)</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt id="link-223" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.CC_copyright_begin=Bio.expressions.swissprot.sprot38-module.html#CC_copyright_begin,Variable Martel.test.test_swissprot38.CC_copyright_begin=Martel.test.test_swissprot38-module.html#CC_copyright_begin,Variable Martel.test.testformats.swissprot38.CC_copyright_begin=Martel.test.testformats.swissprot38-module.html#CC_copyright_begin"><a title="Bio.expressions.swissprot.sprot38.CC_copyright_begin
Martel.test.test_swissprot38.CC_copyright_begin
Martel.test.testformats.swissprot38.CC_copyright_begin" class="py-name" href="#" onclick="return doclink('link-223', 'CC_copyright_begin', 'link-223');">CC_copyright_begin</a></tt> <tt class="py-op">=</tt> <tt id="link-224" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-224', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-225" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-225', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC_copyright_begin"</tt><tt class="py-op">,</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt id="link-226" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-226', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-227', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC -+\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt id="link-228" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.CC_copyright=Bio.expressions.swissprot.sprot38-module.html#CC_copyright,Variable Martel.test.test_swissprot38.CC_copyright=Martel.test.test_swissprot38-module.html#CC_copyright,Variable Martel.test.testformats.swissprot38.CC_copyright=Martel.test.testformats.swissprot38-module.html#CC_copyright"><a title="Bio.expressions.swissprot.sprot38.CC_copyright
Martel.test.test_swissprot38.CC_copyright
Martel.test.testformats.swissprot38.CC_copyright" class="py-name" href="#" onclick="return doclink('link-228', 'CC_copyright', 'link-228');">CC_copyright</a></tt> <tt class="py-op">=</tt> <tt id="link-229" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-229', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-230', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC_copyright"</tt><tt class="py-op">,</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt id="link-231" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-231', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-232', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC (?!-+\R)"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt id="link-233" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-233', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-234" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-234', 'ToEol', 'link-13');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"copyright"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"><tt id="link-235" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.CC_copyright_end=Bio.expressions.swissprot.sprot38-module.html#CC_copyright_end,Variable Martel.test.test_swissprot38.CC_copyright_end=Martel.test.test_swissprot38-module.html#CC_copyright_end,Variable Martel.test.testformats.swissprot38.CC_copyright_end=Martel.test.testformats.swissprot38-module.html#CC_copyright_end"><a title="Bio.expressions.swissprot.sprot38.CC_copyright_end
Martel.test.test_swissprot38.CC_copyright_end
Martel.test.testformats.swissprot38.CC_copyright_end" class="py-name" href="#" onclick="return doclink('link-235', 'CC_copyright_end', 'link-235');">CC_copyright_end</a></tt> <tt class="py-op">=</tt> <tt id="link-236" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-236', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-237" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-237', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC_copyright_end"</tt><tt class="py-op">,</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt id="link-238" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-238', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-239" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-239', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"CC -+\R"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"><tt class="py-comment"># From N33_HUMAN</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-240" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.bogus_DR_group=Bio.expressions.swissprot.sprot38-module.html#bogus_DR_group,Variable Martel.test.test_swissprot38.bogus_DR_group=Martel.test.test_swissprot38-module.html#bogus_DR_group,Variable Martel.test.testformats.swissprot38.bogus_DR_group=Martel.test.testformats.swissprot38-module.html#bogus_DR_group"><a title="Bio.expressions.swissprot.sprot38.bogus_DR_group
Martel.test.test_swissprot38.bogus_DR_group
Martel.test.testformats.swissprot38.bogus_DR_group" class="py-name" href="#" onclick="return doclink('link-240', 'bogus_DR_group', 'link-240');">bogus_DR_group</a></tt> <tt class="py-op">=</tt> <tt id="link-241" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-241', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-242', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"bogus_DR_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt id="link-243" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-243', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-244" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-244', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"(?P<DR>DR (?P<database_identifier>MIM); "</tt> \ </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-string">r"(?P<primary_identifier>601385); "</tt> \ </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-string">r"(?P<secondary_identifier>-).\R)"</tt><tt class="py-op">)</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"><tt id="link-245" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.comment()=Bio.EUtils.POM.ElementNode-class.html#comment,Method Bio.Enzyme._RecordConsumer.comment()=Bio.Enzyme._RecordConsumer-class.html#comment,Method Bio.GenBank._FeatureConsumer.comment()=Bio.GenBank._FeatureConsumer-class.html#comment,Method Bio.GenBank._RecordConsumer.comment()=Bio.GenBank._RecordConsumer-class.html#comment,Method Bio.IntelliGenetics._RecordConsumer.comment()=Bio.IntelliGenetics._RecordConsumer-class.html#comment,Method Bio.NBRF._RecordConsumer.comment()=Bio.NBRF._RecordConsumer-class.html#comment,Method Bio.PopGen.GenePop._RecordConsumer.comment()=Bio.PopGen.GenePop._RecordConsumer-class.html#comment,Method Bio.Prosite._RecordConsumer.comment()=Bio.Prosite._RecordConsumer-class.html#comment,Method Bio.SwissProt.SProt._RecordConsumer.comment()=Bio.SwissProt.SProt._RecordConsumer-class.html#comment,Method Bio.SwissProt.SProt._SequenceConsumer.comment()=Bio.SwissProt.SProt._SequenceConsumer-class.html#comment,Variable Bio.expressions.swissprot.sprot38.comment=Bio.expressions.swissprot.sprot38-module.html#comment,Variable Martel.test.test_swissprot38.comment=Martel.test.test_swissprot38-module.html#comment,Variable Martel.test.testformats.swissprot38.comment=Martel.test.testformats.swissprot38-module.html#comment"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-245', 'comment', 'link-245');">comment</a></tt> <tt class="py-op">=</tt> <tt id="link-246" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-246', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-247" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-247', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"comment_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt id="link-248" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-248', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-249', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-250" class="py-name"><a title="Bio.expressions.swissprot.sprot38.single_comment
Martel.test.test_swissprot38.single_comment
Martel.test.testformats.swissprot38.single_comment" class="py-name" href="#" onclick="return doclink('link-250', 'single_comment', 'link-216');">single_comment</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt id="link-251" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-251', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-252" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-252', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-253" class="py-name"><a title="Bio.expressions.swissprot.sprot38.bogus_DR_group
Martel.test.test_swissprot38.bogus_DR_group
Martel.test.testformats.swissprot38.bogus_DR_group" class="py-name" href="#" onclick="return doclink('link-253', 'bogus_DR_group', 'link-240');">bogus_DR_group</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt id="link-254" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-254', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-255" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-255', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-256" class="py-name"><a title="Bio.expressions.swissprot.sprot38.CC_copyright_begin
Martel.test.test_swissprot38.CC_copyright_begin
Martel.test.testformats.swissprot38.CC_copyright_begin" class="py-name" href="#" onclick="return doclink('link-256', 'CC_copyright_begin', 'link-223');">CC_copyright_begin</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt id="link-257" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-257', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-258', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-259" class="py-name"><a title="Bio.expressions.swissprot.sprot38.CC_copyright
Martel.test.test_swissprot38.CC_copyright
Martel.test.testformats.swissprot38.CC_copyright" class="py-name" href="#" onclick="return doclink('link-259', 'CC_copyright', 'link-228');">CC_copyright</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt id="link-260" class="py-name"><a title="Bio.expressions.swissprot.sprot38.CC_copyright_end
Martel.test.test_swissprot38.CC_copyright_end
Martel.test.testformats.swissprot38.CC_copyright_end" class="py-name" href="#" onclick="return doclink('link-260', 'CC_copyright_end', 'link-235');">CC_copyright_end</a></tt> \ </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"><tt class="py-comment">#--- DR</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"><tt class="py-comment"># This is needed for things like</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># DR MGD; MGI:95401; EPB4.1.</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># where I need to scan up to the last "." That is, I want</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># "EPB4.1" to be the secondary identifier, not "EPB4" nor "EPB4.1."</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"><tt id="link-261" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38._to_secondary_end=Bio.expressions.swissprot.sprot38-module.html#_to_secondary_end"><a title="Bio.expressions.swissprot.sprot38._to_secondary_end" class="py-name" href="#" onclick="return doclink('link-261', '_to_secondary_end', 'link-261');">_to_secondary_end</a></tt> <tt class="py-op">=</tt> <tt id="link-262" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-262', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-263" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-263', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"([^.\R]|(?!.\R)\.)+"</tt><tt class="py-op">)</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"><tt id="link-264" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.database_id=Bio.expressions.swissprot.sprot38-module.html#database_id"><a title="Bio.expressions.swissprot.sprot38.database_id" class="py-name" href="#" onclick="return doclink('link-264', 'database_id', 'link-264');">database_id</a></tt> <tt class="py-op">=</tt> <tt id="link-265" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-265', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-266" class="py-name" targets="Function Bio.Std.dbxref_dbname()=Bio.Std-module.html#dbxref_dbname"><a title="Bio.Std.dbxref_dbname" class="py-name" href="#" onclick="return doclink('link-266', 'dbxref_dbname', 'link-266');">dbxref_dbname</a></tt><tt class="py-op">(</tt><tt id="link-267" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-267', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-268" class="py-name" targets="Function Martel.UntilSep()=Martel-module.html#UntilSep"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-268', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"database_identifier"</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"><tt id="link-269" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.primary_id=Bio.expressions.swissprot.sprot38-module.html#primary_id"><a title="Bio.expressions.swissprot.sprot38.primary_id" class="py-name" href="#" onclick="return doclink('link-269', 'primary_id', 'link-269');">primary_id</a></tt> <tt class="py-op">=</tt> <tt id="link-270" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-270', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-271" class="py-name" targets="Function Bio.Std.dbxref_dbid()=Bio.Std-module.html#dbxref_dbid"><a title="Bio.Std.dbxref_dbid" class="py-name" href="#" onclick="return doclink('link-271', 'dbxref_dbid', 'link-271');">dbxref_dbid</a></tt><tt class="py-op">(</tt><tt id="link-272" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-272', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-273" class="py-name"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-273', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"primary_identifier"</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"primary"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt id="link-274" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.secondary_id=Bio.expressions.swissprot.sprot38-module.html#secondary_id"><a title="Bio.expressions.swissprot.sprot38.secondary_id" class="py-name" href="#" onclick="return doclink('link-274', 'secondary_id', 'link-274');">secondary_id</a></tt> <tt class="py-op">=</tt> <tt id="link-275" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-275', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-276" class="py-name"><a title="Bio.Std.dbxref_dbid" class="py-name" href="#" onclick="return doclink('link-276', 'dbxref_dbid', 'link-271');">dbxref_dbid</a></tt><tt class="py-op">(</tt><tt id="link-277" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-277', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-278', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"secondary_identifier"</tt><tt class="py-op">,</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt id="link-279" class="py-name"><a title="Bio.expressions.swissprot.sprot38._to_secondary_end" class="py-name" href="#" onclick="return doclink('link-279', '_to_secondary_end', 'link-261');">_to_secondary_end</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"accession"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"><tt class="py-comment"># used in StdHandler for fast dxbref - don't rename!</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-280" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.real_DR_general=Bio.expressions.swissprot.sprot38-module.html#real_DR_general"><a title="Bio.expressions.swissprot.sprot38.real_DR_general" class="py-name" href="#" onclick="return doclink('link-280', 'real_DR_general', 'link-280');">real_DR_general</a></tt> <tt class="py-op">=</tt> <tt id="link-281" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-281', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-282" class="py-name" targets="Function Bio.Std.dbxref()=Bio.Std-module.html#dbxref"><a title="Bio.Std.dbxref" class="py-name" href="#" onclick="return doclink('link-282', 'dbxref', 'link-282');">dbxref</a></tt><tt class="py-op">(</tt><tt id="link-283" class="py-name"><a title="Bio.expressions.swissprot.sprot38.database_id" class="py-name" href="#" onclick="return doclink('link-283', 'database_id', 'link-264');">database_id</a></tt> <tt class="py-op">+</tt> <tt id="link-284" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-284', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-285" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-285', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt id="link-286" class="py-name"><a title="Bio.expressions.swissprot.sprot38.primary_id" class="py-name" href="#" onclick="return doclink('link-286', 'primary_id', 'link-269');">primary_id</a></tt> <tt class="py-op">+</tt> <tt id="link-287" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-287', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-288" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-288', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt id="link-289" class="py-name"><a title="Bio.expressions.swissprot.sprot38.secondary_id" class="py-name" href="#" onclick="return doclink('link-289', 'secondary_id', 'link-274');">secondary_id</a></tt><tt class="py-op">,</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt id="link-290" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.fast_DR_general=Bio.expressions.swissprot.sprot38-module.html#fast_DR_general"><a title="Bio.expressions.swissprot.sprot38.fast_DR_general" class="py-name" href="#" onclick="return doclink('link-290', 'fast_DR_general', 'link-290');">fast_DR_general</a></tt> <tt class="py-op">=</tt> <tt id="link-291" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-291', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-292" class="py-name" targets="Function Bio.Std.fast_dbxref()=Bio.Std-module.html#fast_dbxref"><a title="Bio.Std.fast_dbxref" class="py-name" href="#" onclick="return doclink('link-292', 'fast_dbxref', 'link-292');">fast_dbxref</a></tt><tt class="py-op">(</tt><tt id="link-293" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_general" class="py-name" href="#" onclick="return doclink('link-293', 'real_DR_general', 'link-280');">real_DR_general</a></tt><tt class="py-op">,</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp-general"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"><tt id="link-294" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DR_general=Bio.expressions.swissprot.sprot38-module.html#DR_general,Variable Martel.test.test_swissprot38.DR_general=Martel.test.test_swissprot38-module.html#DR_general,Variable Martel.test.testformats.swissprot38.DR_general=Martel.test.testformats.swissprot38-module.html#DR_general"><a title="Bio.expressions.swissprot.sprot38.DR_general
Martel.test.test_swissprot38.DR_general
Martel.test.testformats.swissprot38.DR_general" class="py-name" href="#" onclick="return doclink('link-294', 'DR_general', 'link-294');">DR_general</a></tt> <tt class="py-op">=</tt> <tt id="link-295" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-295', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-296" class="py-name" targets="Class Martel.Expression.FastFeature=Martel.Expression.FastFeature-class.html"><a title="Martel.Expression.FastFeature" class="py-name" href="#" onclick="return doclink('link-296', 'FastFeature', 'link-296');">FastFeature</a></tt><tt class="py-op">(</tt><tt id="link-297" class="py-name"><a title="Bio.expressions.swissprot.sprot38.fast_DR_general" class="py-name" href="#" onclick="return doclink('link-297', 'fast_DR_general', 'link-290');">fast_DR_general</a></tt><tt class="py-op">,</tt> <tt class="py-string">"fast-sp-dbxref"</tt><tt class="py-op">,</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt id="link-298" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_general" class="py-name" href="#" onclick="return doclink('link-298', 'real_DR_general', 'link-280');">real_DR_general</a></tt><tt class="py-op">.</tt><tt id="link-299" class="py-name" targets="Method Martel.Expression.Expression.group_names()=Martel.Expression.Expression-class.html#group_names,Method Martel.Expression.ExpressionList.group_names()=Martel.Expression.ExpressionList-class.html#group_names,Method Martel.Expression.Group.group_names()=Martel.Expression.Group-class.html#group_names,Method Martel.Expression.HeaderFooter.group_names()=Martel.Expression.HeaderFooter-class.html#group_names,Method Martel.Expression.MaxRepeat.group_names()=Martel.Expression.MaxRepeat-class.html#group_names,Method Martel.Expression.ParseRecords.group_names()=Martel.Expression.ParseRecords-class.html#group_names,Method Martel.Expression.PassThrough.group_names()=Martel.Expression.PassThrough-class.html#group_names"><a title="Martel.Expression.Expression.group_names
Martel.Expression.ExpressionList.group_names
Martel.Expression.Group.group_names
Martel.Expression.HeaderFooter.group_names
Martel.Expression.MaxRepeat.group_names
Martel.Expression.ParseRecords.group_names
Martel.Expression.PassThrough.group_names" class="py-name" href="#" onclick="return doclink('link-299', 'group_names', 'link-299');">group_names</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"><tt class="py-comment"># used in StdHandler for fast dxbref - don't rename!</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-300" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.real_DR_prosite=Bio.expressions.swissprot.sprot38-module.html#real_DR_prosite"><a title="Bio.expressions.swissprot.sprot38.real_DR_prosite" class="py-name" href="#" onclick="return doclink('link-300', 'real_DR_prosite', 'link-300');">real_DR_prosite</a></tt> <tt class="py-op">=</tt> <tt id="link-301" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-301', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-302" class="py-name"><a title="Bio.Std.dbxref" class="py-name" href="#" onclick="return doclink('link-302', 'dbxref', 'link-282');">dbxref</a></tt><tt class="py-op">(</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt id="link-303" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-303', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-304" class="py-name"><a title="Bio.Std.dbxref_dbname" class="py-name" href="#" onclick="return doclink('link-304', 'dbxref_dbname', 'link-266');">dbxref_dbname</a></tt><tt class="py-op">(</tt><tt id="link-305" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-305', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-306" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-306', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"database_identifier"</tt><tt class="py-op">,</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt id="link-307" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-307', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-308" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-308', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"PROSITE"</tt><tt class="py-op">,</tt> <tt class="py-string">"PFAM"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt id="link-309" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-309', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-310" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-310', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt id="link-311" class="py-name"><a title="Bio.expressions.swissprot.sprot38.primary_id" class="py-name" href="#" onclick="return doclink('link-311', 'primary_id', 'link-269');">primary_id</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt id="link-312" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-312', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-313" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-313', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt id="link-314" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-314', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-315" class="py-name"><a title="Bio.Std.dbxref_dbid" class="py-name" href="#" onclick="return doclink('link-315', 'dbxref_dbid', 'link-271');">dbxref_dbid</a></tt><tt class="py-op">(</tt><tt id="link-316" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-316', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-317" class="py-name"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-317', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-name">sep</tt> <tt class="py-op">=</tt> <tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"accession"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt id="link-318" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-318', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-319" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-319', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt id="link-320" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-320', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-321" class="py-name"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-321', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"status_identifier"</tt><tt class="py-op">,</tt> <tt class="py-string">"."</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"><tt class="py-comment"># used in StdHandler for fast dxbref - don't rename!</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-322" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.fast_DR_prosite=Bio.expressions.swissprot.sprot38-module.html#fast_DR_prosite"><a title="Bio.expressions.swissprot.sprot38.fast_DR_prosite" class="py-name" href="#" onclick="return doclink('link-322', 'fast_DR_prosite', 'link-322');">fast_DR_prosite</a></tt> <tt class="py-op">=</tt> <tt id="link-323" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-323', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-324" class="py-name"><a title="Bio.Std.fast_dbxref" class="py-name" href="#" onclick="return doclink('link-324', 'fast_dbxref', 'link-292');">fast_dbxref</a></tt><tt class="py-op">(</tt><tt id="link-325" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_prosite" class="py-name" href="#" onclick="return doclink('link-325', 'real_DR_prosite', 'link-300');">real_DR_prosite</a></tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp-prosite"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"><tt id="link-326" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DR_prosite=Bio.expressions.swissprot.sprot38-module.html#DR_prosite,Variable Martel.test.test_swissprot38.DR_prosite=Martel.test.test_swissprot38-module.html#DR_prosite,Variable Martel.test.testformats.swissprot38.DR_prosite=Martel.test.testformats.swissprot38-module.html#DR_prosite"><a title="Bio.expressions.swissprot.sprot38.DR_prosite
Martel.test.test_swissprot38.DR_prosite
Martel.test.testformats.swissprot38.DR_prosite" class="py-name" href="#" onclick="return doclink('link-326', 'DR_prosite', 'link-326');">DR_prosite</a></tt> <tt class="py-op">=</tt> <tt id="link-327" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-327', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-328" class="py-name"><a title="Martel.Expression.FastFeature" class="py-name" href="#" onclick="return doclink('link-328', 'FastFeature', 'link-296');">FastFeature</a></tt><tt class="py-op">(</tt><tt id="link-329" class="py-name"><a title="Bio.expressions.swissprot.sprot38.fast_DR_prosite" class="py-name" href="#" onclick="return doclink('link-329', 'fast_DR_prosite', 'link-322');">fast_DR_prosite</a></tt><tt class="py-op">,</tt> <tt class="py-string">"fast-sp-dbxref"</tt><tt class="py-op">,</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt id="link-330" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_prosite" class="py-name" href="#" onclick="return doclink('link-330', 'real_DR_prosite', 'link-300');">real_DR_prosite</a></tt><tt class="py-op">.</tt><tt id="link-331" class="py-name"><a title="Martel.Expression.Expression.group_names
Martel.Expression.ExpressionList.group_names
Martel.Expression.Group.group_names
Martel.Expression.HeaderFooter.group_names
Martel.Expression.MaxRepeat.group_names
Martel.Expression.ParseRecords.group_names
Martel.Expression.PassThrough.group_names" class="py-name" href="#" onclick="return doclink('link-331', 'group_names', 'link-299');">group_names</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"><tt id="link-332" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.real_DR_embl=Bio.expressions.swissprot.sprot38-module.html#real_DR_embl"><a title="Bio.expressions.swissprot.sprot38.real_DR_embl" class="py-name" href="#" onclick="return doclink('link-332', 'real_DR_embl', 'link-332');">real_DR_embl</a></tt> <tt class="py-op">=</tt> <tt id="link-333" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-333', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-334" class="py-name"><a title="Bio.Std.dbxref" class="py-name" href="#" onclick="return doclink('link-334', 'dbxref', 'link-282');">dbxref</a></tt><tt class="py-op">(</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt id="link-335" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-335', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-336" class="py-name"><a title="Bio.Std.dbxref_dbname" class="py-name" href="#" onclick="return doclink('link-336', 'dbxref_dbname', 'link-266');">dbxref_dbname</a></tt><tt class="py-op">(</tt><tt id="link-337" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-337', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-338" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-338', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"database_identifier"</tt><tt class="py-op">,</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt id="link-339" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-339', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-340" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-340', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"EMBL"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt id="link-341" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-341', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-342" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-342', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt id="link-343" class="py-name"><a title="Bio.expressions.swissprot.sprot38.primary_id" class="py-name" href="#" onclick="return doclink('link-343', 'primary_id', 'link-269');">primary_id</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt id="link-344" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-344', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-345" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-345', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt id="link-346" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-346', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-347" class="py-name"><a title="Bio.Std.dbxref_dbid" class="py-name" href="#" onclick="return doclink('link-347', 'dbxref_dbid', 'link-271');">dbxref_dbid</a></tt><tt class="py-op">(</tt><tt id="link-348" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-348', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-349" class="py-name"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-349', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"secondary_identifier"</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt><tt class="py-op">:</tt> <tt class="py-string">"accession"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt id="link-350" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-350', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-351" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-351', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"; "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt id="link-352" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-352', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-353" class="py-name"><a title="Martel.UntilSep" class="py-name" href="#" onclick="return doclink('link-353', 'UntilSep', 'link-268');">UntilSep</a></tt><tt class="py-op">(</tt><tt class="py-string">"status_identifier"</tt><tt class="py-op">,</tt> <tt class="py-string">"."</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"><tt id="link-354" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.fast_DR_embl=Bio.expressions.swissprot.sprot38-module.html#fast_DR_embl"><a title="Bio.expressions.swissprot.sprot38.fast_DR_embl" class="py-name" href="#" onclick="return doclink('link-354', 'fast_DR_embl', 'link-354');">fast_DR_embl</a></tt> <tt class="py-op">=</tt> <tt id="link-355" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-355', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-356" class="py-name"><a title="Bio.Std.fast_dbxref" class="py-name" href="#" onclick="return doclink('link-356', 'fast_dbxref', 'link-292');">fast_dbxref</a></tt><tt class="py-op">(</tt><tt id="link-357" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_embl" class="py-name" href="#" onclick="return doclink('link-357', 'real_DR_embl', 'link-332');">real_DR_embl</a></tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp-embl"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"><tt id="link-358" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DR_embl=Bio.expressions.swissprot.sprot38-module.html#DR_embl,Variable Martel.test.test_swissprot38.DR_embl=Martel.test.test_swissprot38-module.html#DR_embl,Variable Martel.test.testformats.swissprot38.DR_embl=Martel.test.testformats.swissprot38-module.html#DR_embl"><a title="Bio.expressions.swissprot.sprot38.DR_embl
Martel.test.test_swissprot38.DR_embl
Martel.test.testformats.swissprot38.DR_embl" class="py-name" href="#" onclick="return doclink('link-358', 'DR_embl', 'link-358');">DR_embl</a></tt> <tt class="py-op">=</tt> <tt id="link-359" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-359', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-360" class="py-name"><a title="Martel.Expression.FastFeature" class="py-name" href="#" onclick="return doclink('link-360', 'FastFeature', 'link-296');">FastFeature</a></tt><tt class="py-op">(</tt><tt id="link-361" class="py-name"><a title="Bio.expressions.swissprot.sprot38.fast_DR_embl" class="py-name" href="#" onclick="return doclink('link-361', 'fast_DR_embl', 'link-354');">fast_DR_embl</a></tt><tt class="py-op">,</tt> <tt class="py-string">"fast-sp-dbxref"</tt><tt class="py-op">,</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt id="link-362" class="py-name"><a title="Bio.expressions.swissprot.sprot38.real_DR_embl" class="py-name" href="#" onclick="return doclink('link-362', 'real_DR_embl', 'link-332');">real_DR_embl</a></tt><tt class="py-op">.</tt><tt id="link-363" class="py-name"><a title="Martel.Expression.Expression.group_names
Martel.Expression.ExpressionList.group_names
Martel.Expression.Group.group_names
Martel.Expression.HeaderFooter.group_names
Martel.Expression.MaxRepeat.group_names
Martel.Expression.ParseRecords.group_names
Martel.Expression.PassThrough.group_names" class="py-name" href="#" onclick="return doclink('link-363', 'group_names', 'link-299');">group_names</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"><tt id="link-364" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.DR=Bio.expressions.swissprot.sprot38-module.html#DR,Variable Martel.test.test_swissprot38.DR=Martel.test.test_swissprot38-module.html#DR,Variable Martel.test.testformats.swissprot38.DR=Martel.test.testformats.swissprot38-module.html#DR"><a title="Bio.expressions.swissprot.sprot38.DR
Martel.test.test_swissprot38.DR
Martel.test.testformats.swissprot38.DR" class="py-name" href="#" onclick="return doclink('link-364', 'DR', 'link-364');">DR</a></tt> <tt class="py-op">=</tt> <tt id="link-365" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-365', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-366" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-366', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DR"</tt><tt class="py-op">,</tt> <tt id="link-367" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-367', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-368" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-368', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"DR "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt id="link-369" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-369', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-370" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-370', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"database_reference"</tt><tt class="py-op">,</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt id="link-371" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DR_embl
Martel.test.test_swissprot38.DR_embl
Martel.test.testformats.swissprot38.DR_embl" class="py-name" href="#" onclick="return doclink('link-371', 'DR_embl', 'link-358');">DR_embl</a></tt> <tt class="py-op">|</tt> <tt id="link-372" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DR_prosite
Martel.test.test_swissprot38.DR_prosite
Martel.test.testformats.swissprot38.DR_prosite" class="py-name" href="#" onclick="return doclink('link-372', 'DR_prosite', 'link-326');">DR_prosite</a></tt> <tt class="py-op">|</tt> <tt id="link-373" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DR_general
Martel.test.test_swissprot38.DR_general
Martel.test.testformats.swissprot38.DR_general" class="py-name" href="#" onclick="return doclink('link-373', 'DR_general', 'link-294');">DR_general</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt id="link-374" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-374', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-375" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-375', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"."</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-376" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-376', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-377" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-377', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"><tt id="link-378" class="py-name" targets="Variable Bio.expressions.embl.embl65.DR_block=Bio.expressions.embl.embl65-module.html#DR_block,Variable Bio.expressions.swissprot.sprot38.DR_block=Bio.expressions.swissprot.sprot38-module.html#DR_block,Variable Martel.test.test_swissprot38.DR_block=Martel.test.test_swissprot38-module.html#DR_block,Variable Martel.test.testformats.swissprot38.DR_block=Martel.test.testformats.swissprot38-module.html#DR_block"><a title="Bio.expressions.embl.embl65.DR_block
Bio.expressions.swissprot.sprot38.DR_block
Martel.test.test_swissprot38.DR_block
Martel.test.testformats.swissprot38.DR_block" class="py-name" href="#" onclick="return doclink('link-378', 'DR_block', 'link-378');">DR_block</a></tt> <tt class="py-op">=</tt> <tt id="link-379" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-379', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-380" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-380', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"DR_block"</tt><tt class="py-op">,</tt> <tt id="link-381" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-381', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-382" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-382', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-383" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DR
Martel.test.test_swissprot38.DR
Martel.test.testformats.swissprot38.DR" class="py-name" href="#" onclick="return doclink('link-383', 'DR', 'link-364');">DR</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"><tt class="py-comment">#--- KW</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"><tt id="link-384" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.KW=Bio.expressions.swissprot.sprot38-module.html#KW,Variable Martel.test.test_swissprot38.KW=Martel.test.test_swissprot38-module.html#KW,Variable Martel.test.testformats.swissprot38.KW=Martel.test.testformats.swissprot38-module.html#KW"><a title="Bio.expressions.swissprot.sprot38.KW
Martel.test.test_swissprot38.KW
Martel.test.testformats.swissprot38.KW" class="py-name" href="#" onclick="return doclink('link-384', 'KW', 'link-384');">KW</a></tt> <tt class="py-op">=</tt> <tt id="link-385" class="py-name"><a title="Bio.GA.Mutation.Simple
Bio.expressions.swissprot.sprot38.Simple
Martel.test.testformats.swissprot38.Simple" class="py-name" href="#" onclick="return doclink('link-385', 'Simple', 'link-111');">Simple</a></tt><tt class="py-op">(</tt><tt class="py-string">"KW"</tt><tt class="py-op">,</tt> <tt class="py-string">"keyword"</tt><tt class="py-op">)</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"><tt id="link-386" class="py-name" targets="Variable Bio.expressions.embl.embl65.KW_block=Bio.expressions.embl.embl65-module.html#KW_block,Variable Bio.expressions.swissprot.sprot38.KW_block=Bio.expressions.swissprot.sprot38-module.html#KW_block,Variable Martel.test.test_swissprot38.KW_block=Martel.test.test_swissprot38-module.html#KW_block,Variable Martel.test.testformats.swissprot38.KW_block=Martel.test.testformats.swissprot38-module.html#KW_block"><a title="Bio.expressions.embl.embl65.KW_block
Bio.expressions.swissprot.sprot38.KW_block
Martel.test.test_swissprot38.KW_block
Martel.test.testformats.swissprot38.KW_block" class="py-name" href="#" onclick="return doclink('link-386', 'KW_block', 'link-386');">KW_block</a></tt> <tt class="py-op">=</tt> <tt id="link-387" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-387', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-388" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-388', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"KW_block"</tt><tt class="py-op">,</tt> <tt id="link-389" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-389', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-390" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-390', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-391" class="py-name"><a title="Bio.expressions.swissprot.sprot38.KW
Martel.test.test_swissprot38.KW
Martel.test.testformats.swissprot38.KW" class="py-name" href="#" onclick="return doclink('link-391', 'KW', 'link-384');">KW</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"><tt class="py-comment">#--- FT</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"><tt class="py-comment"># FT DOMAIN 77 88 ASP/GLU-RICH (ACIDIC).</tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># 123456789012345678901234567890123456789012345678901234567890123456789012345</tt> </tt>
<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># 1 2 3 4 5 6 7</tt> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># FT ........ ...... ...... .........................................</tt> </tt>
<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># FT 12345678 123456 123456 12345678901234567890123456789012345678901</tt> </tt>
<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># FT .{8} .{6} .{6} [^\R]*</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># 1 1 1234567</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"><tt class="py-comment"># "FT " + ".{8}" + " " + ".{6}" + " " + ".{6}" + " " + "[^\R]*" + "\R"</tt> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># "FT .{8} .{6} .{6} [^\R]*\R"</tt> </tt>
<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-comment">##FT_range = Martel.Group("FT",</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## Martel.Re("FT (?P<ft_name>.{8}) " \</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## "(?P<ft_from>.{6}) (?P<ft_to>.{6})" \</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## "( (?P<ft_description>[^\R]*))?\R")</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## )</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">##FT_continuation = Martel.Group("FT_continuation",</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## Martel.Re("FT " \</tt> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## "(?P<ft_description>[^\R]*)\R")</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## )</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">##FT = Martel.Group("feature", FT_range + Martel.Rep(FT_continuation))</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"><tt id="link-392" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_name=Bio.expressions.swissprot.sprot38-module.html#FT_name"><a title="Bio.expressions.swissprot.sprot38.FT_name" class="py-name" href="#" onclick="return doclink('link-392', 'FT_name', 'link-392');">FT_name</a></tt> <tt class="py-op">=</tt> <tt id="link-393" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-393', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-394" class="py-name" targets="Function Bio.Std.feature_name()=Bio.Std-module.html#feature_name"><a title="Bio.Std.feature_name" class="py-name" href="#" onclick="return doclink('link-394', 'feature_name', 'link-394');">feature_name</a></tt><tt class="py-op">(</tt><tt id="link-395" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-395', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-396" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-396', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r".{8}"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"><tt id="link-397" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_start=Bio.expressions.swissprot.sprot38-module.html#FT_start"><a title="Bio.expressions.swissprot.sprot38.FT_start" class="py-name" href="#" onclick="return doclink('link-397', 'FT_start', 'link-397');">FT_start</a></tt> <tt class="py-op">=</tt> <tt id="link-398" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-398', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-399" class="py-name" targets="Function Bio.Std.feature_location_start()=Bio.Std-module.html#feature_location_start"><a title="Bio.Std.feature_location_start" class="py-name" href="#" onclick="return doclink('link-399', 'feature_location_start', 'link-399');">feature_location_start</a></tt><tt class="py-op">(</tt><tt id="link-400" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-400', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-401" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-401', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r".{6}"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"><tt id="link-402" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_end=Bio.expressions.swissprot.sprot38-module.html#FT_end"><a title="Bio.expressions.swissprot.sprot38.FT_end" class="py-name" href="#" onclick="return doclink('link-402', 'FT_end', 'link-402');">FT_end</a></tt> <tt class="py-op">=</tt> <tt id="link-403" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-403', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-404" class="py-name" targets="Function Bio.Std.feature_location_end()=Bio.Std-module.html#feature_location_end"><a title="Bio.Std.feature_location_end" class="py-name" href="#" onclick="return doclink('link-404', 'feature_location_end', 'link-404');">feature_location_end</a></tt><tt class="py-op">(</tt><tt id="link-405" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-405', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-406" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-406', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r".{6}"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"><tt id="link-407" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_desc=Bio.expressions.swissprot.sprot38-module.html#FT_desc"><a title="Bio.expressions.swissprot.sprot38.FT_desc" class="py-name" href="#" onclick="return doclink('link-407', 'FT_desc', 'link-407');">FT_desc</a></tt> <tt class="py-op">=</tt> <tt id="link-408" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-408', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-409" class="py-name" targets="Function Bio.Std.feature_description()=Bio.Std-module.html#feature_description"><a title="Bio.Std.feature_description" class="py-name" href="#" onclick="return doclink('link-409', 'feature_description', 'link-409');">feature_description</a></tt><tt class="py-op">(</tt><tt id="link-410" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-410', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-411" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-411', 'UntilEol', 'link-99');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"><tt id="link-412" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_range=Bio.expressions.swissprot.sprot38-module.html#FT_range,Variable Martel.test.test_swissprot38.FT_range=Martel.test.test_swissprot38-module.html#FT_range,Variable Martel.test.testformats.swissprot38.FT_range=Martel.test.testformats.swissprot38-module.html#FT_range"><a title="Bio.expressions.swissprot.sprot38.FT_range
Martel.test.test_swissprot38.FT_range
Martel.test.testformats.swissprot38.FT_range" class="py-name" href="#" onclick="return doclink('link-412', 'FT_range', 'link-412');">FT_range</a></tt> <tt class="py-op">=</tt> <tt id="link-413" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-413', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-414" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-414', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"FT "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt id="link-415" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_name" class="py-name" href="#" onclick="return doclink('link-415', 'FT_name', 'link-392');">FT_name</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt id="link-416" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-416', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-417" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-417', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt id="link-418" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_start" class="py-name" href="#" onclick="return doclink('link-418', 'FT_start', 'link-397');">FT_start</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt id="link-419" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-419', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-420" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-420', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt id="link-421" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_end" class="py-name" href="#" onclick="return doclink('link-421', 'FT_end', 'link-402');">FT_end</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt id="link-422" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-422', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-423" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-423', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-424" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-424', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-425" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-425', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt id="link-426" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_desc" class="py-name" href="#" onclick="return doclink('link-426', 'FT_desc', 'link-407');">FT_desc</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> <tt id="link-427" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-427', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-428" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-428', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"><tt id="link-429" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT_continuation=Bio.expressions.swissprot.sprot38-module.html#FT_continuation,Variable Martel.test.test_swissprot38.FT_continuation=Martel.test.test_swissprot38-module.html#FT_continuation,Variable Martel.test.testformats.swissprot38.FT_continuation=Martel.test.testformats.swissprot38-module.html#FT_continuation"><a title="Bio.expressions.swissprot.sprot38.FT_continuation
Martel.test.test_swissprot38.FT_continuation
Martel.test.testformats.swissprot38.FT_continuation" class="py-name" href="#" onclick="return doclink('link-429', 'FT_continuation', 'link-429');">FT_continuation</a></tt> <tt class="py-op">=</tt> <tt id="link-430" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-430', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-431" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-431', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"FT "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> <tt id="link-432" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_desc" class="py-name" href="#" onclick="return doclink('link-432', 'FT_desc', 'link-407');">FT_desc</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt id="link-433" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-433', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-434" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-434', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"><tt id="link-435" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.FT=Bio.expressions.swissprot.sprot38-module.html#FT,Variable Martel.test.test_swissprot38.FT=Martel.test.test_swissprot38-module.html#FT,Variable Martel.test.testformats.swissprot38.FT=Martel.test.testformats.swissprot38-module.html#FT"><a title="Bio.expressions.swissprot.sprot38.FT
Martel.test.test_swissprot38.FT
Martel.test.testformats.swissprot38.FT" class="py-name" href="#" onclick="return doclink('link-435', 'FT', 'link-435');">FT</a></tt> <tt class="py-op">=</tt> <tt id="link-436" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-436', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-437" class="py-name" targets="Function Bio.Std.feature()=Bio.Std-module.html#feature,Variable Bio.expressions.embl.embl65.feature=Bio.expressions.embl.embl65-module.html#feature,Variable Bio.expressions.genbank.feature=Bio.expressions.genbank-module.html#feature"><a title="Bio.Std.feature
Bio.expressions.embl.embl65.feature
Bio.expressions.genbank.feature" class="py-name" href="#" onclick="return doclink('link-437', 'feature', 'link-437');">feature</a></tt><tt class="py-op">(</tt><tt id="link-438" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_range
Martel.test.test_swissprot38.FT_range
Martel.test.testformats.swissprot38.FT_range" class="py-name" href="#" onclick="return doclink('link-438', 'FT_range', 'link-412');">FT_range</a></tt> <tt class="py-op">+</tt> <tt id="link-439" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-439', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-440" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-440', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-441" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT_continuation
Martel.test.test_swissprot38.FT_continuation
Martel.test.testformats.swissprot38.FT_continuation" class="py-name" href="#" onclick="return doclink('link-441', 'FT_continuation', 'link-429');">FT_continuation</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"location-style"</tt><tt class="py-op">:</tt> <tt class="py-string">"sp"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"><tt class="py-comment">##feature_block = Martel.Group("feature_block", Martel.Rep1(FT))</tt> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-442" class="py-name" targets="Function Bio.Std.feature_block()=Bio.Std-module.html#feature_block,Variable Bio.expressions.genbank.feature_block=Bio.expressions.genbank-module.html#feature_block,Variable Bio.expressions.swissprot.sprot38.feature_block=Bio.expressions.swissprot.sprot38-module.html#feature_block,Variable Martel.test.test_swissprot38.feature_block=Martel.test.test_swissprot38-module.html#feature_block,Variable Martel.test.testformats.swissprot38.feature_block=Martel.test.testformats.swissprot38-module.html#feature_block"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-442', 'feature_block', 'link-442');">feature_block</a></tt> <tt class="py-op">=</tt> <tt id="link-443" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-443', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-444" class="py-name"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-444', 'feature_block', 'link-442');">feature_block</a></tt><tt class="py-op">(</tt><tt id="link-445" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-445', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-446" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-446', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-447" class="py-name"><a title="Bio.expressions.swissprot.sprot38.FT
Martel.test.test_swissprot38.FT
Martel.test.testformats.swissprot38.FT" class="py-name" href="#" onclick="return doclink('link-447', 'FT', 'link-435');">FT</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"style"</tt><tt class="py-op">:</tt> <tt class="py-string">"swissprot"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"><tt class="py-comment">#--- SQ</tt> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"><tt class="py-comment"># SQ SEQUENCE XXXX AA; XXXXX MW; XXXXX CRC32;</tt> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># (Those X's don't really indicate the size)</tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"><tt id="link-448" class="py-name" targets="Variable Bio.expressions.swissprot.sprot38.SQ=Bio.expressions.swissprot.sprot38-module.html#SQ,Variable Martel.test.test_swissprot38.SQ=Martel.test.test_swissprot38-module.html#SQ,Variable Martel.test.testformats.swissprot38.SQ=Martel.test.testformats.swissprot38-module.html#SQ"><a title="Bio.expressions.swissprot.sprot38.SQ
Martel.test.test_swissprot38.SQ
Martel.test.testformats.swissprot38.SQ" class="py-name" href="#" onclick="return doclink('link-448', 'SQ', 'link-448');">SQ</a></tt> <tt class="py-op">=</tt> <tt id="link-449" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-449', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-450" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-450', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"SQ"</tt><tt class="py-op">,</tt> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt id="link-451" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-451', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-452" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-452', 'Re', 'link-80');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"SQ SEQUENCE +(?P<sequence_length>\d+) AA;"</tt> \ </tt>
<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt class="py-string">" +(?P<molecular_weight>\d+) MW;"</tt> \ </tt>
<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-string">" +(?P<crc?type=32>\w+) CRC32;\R"</tt><tt class="py-op">)</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"><tt class="py-comment">##SQ_data = Martel.Group("SQ_data",</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## Martel.Re(" (?P<sequence>[^\R]*)\R"))</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-453" class="py-name" targets="Variable Bio.expressions.embl.embl65.SQ_data=Bio.expressions.embl.embl65-module.html#SQ_data,Variable Bio.expressions.swissprot.sprot38.SQ_data=Bio.expressions.swissprot.sprot38-module.html#SQ_data,Variable Martel.test.test_swissprot38.SQ_data=Martel.test.test_swissprot38-module.html#SQ_data,Variable Martel.test.testformats.swissprot38.SQ_data=Martel.test.testformats.swissprot38-module.html#SQ_data"><a title="Bio.expressions.embl.embl65.SQ_data
Bio.expressions.swissprot.sprot38.SQ_data
Martel.test.test_swissprot38.SQ_data
Martel.test.testformats.swissprot38.SQ_data" class="py-name" href="#" onclick="return doclink('link-453', 'SQ_data', 'link-453');">SQ_data</a></tt> <tt class="py-op">=</tt> <tt id="link-454" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-454', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-455" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-455', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt id="link-456" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-456', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-457" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.sequence()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence,Variable Bio.Emboss.primer3_format.sequence=Bio.Emboss.primer3_format-module.html#sequence,Method Bio.FSSP.FSSPAlignDict.sequence()=Bio.FSSP.FSSPAlignDict-class.html#sequence,Method Bio.GenBank._FeatureConsumer.sequence()=Bio.GenBank._FeatureConsumer-class.html#sequence,Method Bio.GenBank._RecordConsumer.sequence()=Bio.GenBank._RecordConsumer-class.html#sequence,Method Bio.IntelliGenetics._RecordConsumer.sequence()=Bio.IntelliGenetics._RecordConsumer-class.html#sequence,Method Bio.Rebase._RecordConsumer.sequence()=Bio.Rebase._RecordConsumer-class.html#sequence,Function Bio.Std.sequence()=Bio.Std-module.html#sequence,Module Bio.builders.SeqRecord.sequence=Bio.builders.SeqRecord.sequence-module.html,Variable Bio.expressions.fasta.sequence=Bio.expressions.fasta-module.html#sequence,Variable Bio.expressions.genbank.sequence=Bio.expressions.genbank-module.html#sequence,Variable Bio.expressions.swissprot.sprot38.sequence=Bio.expressions.swissprot.sprot38-module.html#sequence,Module Bio.formatdefs.sequence=Bio.formatdefs.sequence-module.html,Variable Bio.formatdefs.sequence.sequence=Bio.formatdefs.sequence-module.html#sequence,Variable Martel.test.test_swissprot38.sequence=Martel.test.test_swissprot38-module.html#sequence,Variable Martel.test.testformats.swissprot38.sequence=Martel.test.testformats.swissprot38-module.html#sequence"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-457', 'sequence', 'link-457');">sequence</a></tt><tt class="py-op">(</tt><tt id="link-458" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-458', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-459" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-459', 'UntilEol', 'link-99');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> <tt id="link-460" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-460', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-461" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-461', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> </tt>
<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"><tt class="py-comment">##sequence = Martel.Group("sequence_block", Martel.Group("SQ_data_block",</tt> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## SQ + Martel.Rep(SQ_data)))</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-462" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-462', 'sequence', 'link-457');">sequence</a></tt> <tt class="py-op">=</tt> <tt id="link-463" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-463', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-464" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_block=Bio.CDD.cdd_format-module.html#sequence_block,Variable Bio.NBRF.nbrf_format.sequence_block=Bio.NBRF.nbrf_format-module.html#sequence_block,Function Bio.Std.sequence_block()=Bio.Std-module.html#sequence_block"><a title="Bio.CDD.cdd_format.sequence_block
Bio.NBRF.nbrf_format.sequence_block
Bio.Std.sequence_block" class="py-name" href="#" onclick="return doclink('link-464', 'sequence_block', 'link-464');">sequence_block</a></tt><tt class="py-op">(</tt><tt id="link-465" class="py-name"><a title="Bio.expressions.swissprot.sprot38.SQ
Martel.test.test_swissprot38.SQ
Martel.test.testformats.swissprot38.SQ" class="py-name" href="#" onclick="return doclink('link-465', 'SQ', 'link-448');">SQ</a></tt> <tt class="py-op">+</tt> <tt id="link-466" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-466', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-467" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-467', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-468" class="py-name"><a title="Bio.expressions.embl.embl65.SQ_data
Bio.expressions.swissprot.sprot38.SQ_data
Martel.test.test_swissprot38.SQ_data
Martel.test.testformats.swissprot38.SQ_data" class="py-name" href="#" onclick="return doclink('link-468', 'SQ_data', 'link-453');">SQ_data</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"alphabet"</tt><tt class="py-op">:</tt> <tt class="py-string">"iupac-ambiguous-protein"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"><tt class="py-comment">#--- //</tt> </tt>
<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"><tt id="link-469" class="py-name" targets="Method Bio.GFF.easy.Location.end()=Bio.GFF.easy.Location-class.html#end,Method Bio.Prosite.Pattern.PrositeMatch.end()=Bio.Prosite.Pattern.PrositeMatch-class.html#end,Variable Bio.expressions.blocks.end=Bio.expressions.blocks-module.html#end,Variable Bio.expressions.embl.embl65.end=Bio.expressions.embl.embl65-module.html#end,Variable Bio.expressions.swissprot.sprot38.end=Bio.expressions.swissprot.sprot38-module.html#end,Method Martel.LAX.LAX.end()=Martel.LAX.LAX-class.html#end,Variable Martel.test.test_swissprot38.end=Martel.test.test_swissprot38-module.html#end,Variable Martel.test.testformats.swissprot38.end=Martel.test.testformats.swissprot38-module.html#end"><a title="Bio.GFF.easy.Location.end
Bio.Prosite.Pattern.PrositeMatch.end
Bio.expressions.blocks.end
Bio.expressions.embl.embl65.end
Bio.expressions.swissprot.sprot38.end
Martel.LAX.LAX.end
Martel.test.test_swissprot38.end
Martel.test.testformats.swissprot38.end" class="py-name" href="#" onclick="return doclink('link-469', 'end', 'link-469');">end</a></tt> <tt class="py-op">=</tt> <tt id="link-470" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-470', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-471" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-471', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"END"</tt><tt class="py-op">,</tt> <tt id="link-472" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-472', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-473" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-473', 'Str', 'link-10');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"//"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-474" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-474', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-475" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-475', 'AnyEol', 'link-42');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"><tt class="py-comment">####################### put it all together</tt> </tt>
<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"><tt id="link-476" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-476', 'record', 'link-476');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-477" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-477', 'Std', 'link-5');">Std</a></tt><tt class="py-op">.</tt><tt id="link-478" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-478', 'record', 'link-476');">record</a></tt><tt class="py-op">(</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt id="link-479" class="py-name"><a title="Bio.EUtils.POM.ID
Bio.UniGene._RecordConsumer.ID
Bio.expressions.blocks.ID
Bio.expressions.swissprot.sprot38.ID
Martel.test.test_swissprot38.ID
Martel.test.testformats.swissprot38.ID" class="py-name" href="#" onclick="return doclink('link-479', 'ID', 'link-14');">ID</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt id="link-480" class="py-name"><a title="Bio.expressions.embl.embl65.AC_block
Bio.expressions.swissprot.sprot38.AC_block
Martel.test.test_swissprot38.AC_block
Martel.test.testformats.swissprot38.AC_block" class="py-name" href="#" onclick="return doclink('link-480', 'AC_block', 'link-66');">AC_block</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt id="link-481" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DT_created
Martel.test.test_swissprot38.DT_created
Martel.test.testformats.swissprot38.DT_created" class="py-name" href="#" onclick="return doclink('link-481', 'DT_created', 'link-72');">DT_created</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt id="link-482" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DT_seq_update
Martel.test.test_swissprot38.DT_seq_update
Martel.test.testformats.swissprot38.DT_seq_update" class="py-name" href="#" onclick="return doclink('link-482', 'DT_seq_update', 'link-81');">DT_seq_update</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt id="link-483" class="py-name"><a title="Bio.expressions.swissprot.sprot38.DT_ann_update
Martel.test.test_swissprot38.DT_ann_update
Martel.test.testformats.swissprot38.DT_ann_update" class="py-name" href="#" onclick="return doclink('link-483', 'DT_ann_update', 'link-86');">DT_ann_update</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt id="link-484" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-484', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-485" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-485', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-486" class="py-name"><a title="Bio.expressions.embl.embl65.DE_block
Bio.expressions.swissprot.sprot38.DE_block
Martel.test.test_swissprot38.DE_block
Martel.test.testformats.swissprot38.DE_block" class="py-name" href="#" onclick="return doclink('link-486', 'DE_block', 'link-102');">DE_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt id="link-487" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-487', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-488" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-488', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-489" class="py-name"><a title="Bio.expressions.swissprot.sprot38.GN_block
Martel.test.test_swissprot38.GN_block
Martel.test.testformats.swissprot38.GN_block" class="py-name" href="#" onclick="return doclink('link-489', 'GN_block', 'link-112');">GN_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt id="link-490" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-490', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-491" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-491', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-492" class="py-name"><a title="Bio.expressions.embl.embl65.OS_block
Bio.expressions.swissprot.sprot38.OS_block
Martel.test.test_swissprot38.OS_block
Martel.test.testformats.swissprot38.OS_block" class="py-name" href="#" onclick="return doclink('link-492', 'OS_block', 'link-120');">OS_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt id="link-493" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-493', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-494" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-494', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-495" class="py-name"><a title="Bio.expressions.embl.embl65.OG_block
Bio.expressions.swissprot.sprot38.OG_block
Martel.test.test_swissprot38.OG_block
Martel.test.testformats.swissprot38.OG_block" class="py-name" href="#" onclick="return doclink('link-495', 'OG_block', 'link-128');">OG_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt id="link-496" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-496', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-497" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-497', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-498" class="py-name"><a title="Bio.expressions.embl.embl65.OC_block
Bio.expressions.swissprot.sprot38.OC_block
Martel.test.test_swissprot38.OC_block
Martel.test.testformats.swissprot38.OC_block" class="py-name" href="#" onclick="return doclink('link-498', 'OC_block', 'link-136');">OC_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt id="link-499" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-499', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-500" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-500', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"OX_block"</tt><tt class="py-op">,</tt> <tt id="link-501" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-501', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-502" class="py-name" targets="Class Martel.Expression.NullOp=Martel.Expression.NullOp-class.html"><a title="Martel.Expression.NullOp" class="py-name" href="#" onclick="return doclink('link-502', 'NullOp', 'link-502');">NullOp</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt id="link-503" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-503', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-504" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-504', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference_block"</tt><tt class="py-op">,</tt> <tt id="link-505" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-505', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-506" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-506', 'Rep', 'link-55');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-507" class="py-name"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-507', 'reference', 'link-186');">reference</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt id="link-508" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-508', 'comment', 'link-245');">comment</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt id="link-509" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-509', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-510" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-510', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-511" class="py-name"><a title="Bio.expressions.embl.embl65.DR_block
Bio.expressions.swissprot.sprot38.DR_block
Martel.test.test_swissprot38.DR_block
Martel.test.testformats.swissprot38.DR_block" class="py-name" href="#" onclick="return doclink('link-511', 'DR_block', 'link-378');">DR_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> <tt id="link-512" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-512', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-513" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-513', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-514" class="py-name"><a title="Bio.expressions.embl.embl65.KW_block
Bio.expressions.swissprot.sprot38.KW_block
Martel.test.test_swissprot38.KW_block
Martel.test.testformats.swissprot38.KW_block" class="py-name" href="#" onclick="return doclink('link-514', 'KW_block', 'link-386');">KW_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt id="link-515" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-515', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-516" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-516', 'Opt', 'link-192');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-517" class="py-name"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-517', 'feature_block', 'link-442');">feature_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt id="link-518" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-518', 'sequence', 'link-457');">sequence</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt id="link-519" class="py-name"><a title="Bio.GFF.easy.Location.end
Bio.Prosite.Pattern.PrositeMatch.end
Bio.expressions.blocks.end
Bio.expressions.embl.embl65.end
Bio.expressions.swissprot.sprot38.end
Martel.LAX.LAX.end
Martel.test.test_swissprot38.end
Martel.test.testformats.swissprot38.end" class="py-name" href="#" onclick="return doclink('link-519', 'end', 'link-469');">end</a></tt><tt class="py-op">,</tt> </tt>
<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"format"</tt><tt class="py-op">:</tt> <tt class="py-string">"swissprot/38"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"><tt id="link-520" class="py-name" targets="Variable Bio.expressions.blocks.format_expression=Bio.expressions.blocks-module.html#format_expression,Variable Bio.expressions.embl.embl65.format_expression=Bio.expressions.embl.embl65-module.html#format_expression,Variable Bio.expressions.swissprot.ipi.format_expression=Bio.expressions.swissprot.ipi-module.html#format_expression,Variable Bio.expressions.swissprot.sprot38.format_expression=Bio.expressions.swissprot.sprot38-module.html#format_expression,Variable Bio.expressions.swissprot.sprot40.format_expression=Bio.expressions.swissprot.sprot40-module.html#format_expression,Variable Martel.test.test_swissprot38.format_expression=Martel.test.test_swissprot38-module.html#format_expression,Variable Martel.test.testformats.swissprot38.format_expression=Martel.test.testformats.swissprot38-module.html#format_expression"><a title="Bio.expressions.blocks.format_expression
Bio.expressions.embl.embl65.format_expression
Bio.expressions.swissprot.ipi.format_expression
Bio.expressions.swissprot.sprot38.format_expression
Bio.expressions.swissprot.sprot40.format_expression
Martel.test.test_swissprot38.format_expression
Martel.test.testformats.swissprot38.format_expression" class="py-name" href="#" onclick="return doclink('link-520', 'format_expression', 'link-520');">format_expression</a></tt> <tt class="py-op">=</tt> <tt id="link-521" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-521', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-522" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-522', 'Group', 'link-7');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt id="link-523" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-523', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-524" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-524', 'Rep1', 'link-70');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-525" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-525', 'record', 'link-476');">record</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"format"</tt><tt class="py-op">:</tt> <tt class="py-string">"swissprot/38"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"><tt id="link-526" class="py-name" targets="Method Bio.Restriction.Restriction.RestrictionBatch.format()=Bio.Restriction.Restriction.RestrictionBatch-class.html#format,Variable Bio.expressions.blast.ncbiblast.format=Bio.expressions.blast.ncbiblast-module.html#format,Variable Bio.expressions.blast.wublast.format=Bio.expressions.blast.wublast-module.html#format,Variable Bio.expressions.blocks.format=Bio.expressions.blocks-module.html#format,Variable Bio.expressions.embl.embl65.format=Bio.expressions.embl.embl65-module.html#format,Variable Bio.expressions.fasta.format=Bio.expressions.fasta-module.html#format,Variable Bio.expressions.genbank.format=Bio.expressions.genbank-module.html#format,Variable Bio.expressions.hmmpfam.format=Bio.expressions.hmmpfam-module.html#format,Variable Bio.expressions.swissprot.ipi.format=Bio.expressions.swissprot.ipi-module.html#format,Variable Bio.expressions.swissprot.speclist.format=Bio.expressions.swissprot.speclist-module.html#format,Variable Bio.expressions.swissprot.sprot38.format=Bio.expressions.swissprot.sprot38-module.html#format,Variable Bio.expressions.swissprot.sprot40.format=Bio.expressions.swissprot.sprot40-module.html#format,Variable Bio.expressions.transfac.format=Bio.expressions.transfac-module.html#format,Variable Martel.test.test_swissprot38.format=Martel.test.test_swissprot38-module.html#format,Variable Martel.test.testformats.swissprot38.format=Martel.test.testformats.swissprot38-module.html#format"><a title="Bio.Restriction.Restriction.RestrictionBatch.format
Bio.expressions.blast.ncbiblast.format
Bio.expressions.blast.wublast.format
Bio.expressions.blocks.format
Bio.expressions.embl.embl65.format
Bio.expressions.fasta.format
Bio.expressions.genbank.format
Bio.expressions.hmmpfam.format
Bio.expressions.swissprot.ipi.format
Bio.expressions.swissprot.speclist.format
Bio.expressions.swissprot.sprot38.format
Bio.expressions.swissprot.sprot40.format
Bio.expressions.transfac.format
Martel.test.test_swissprot38.format
Martel.test.testformats.swissprot38.format" class="py-name" href="#" onclick="return doclink('link-526', 'format', 'link-526');">format</a></tt> <tt class="py-op">=</tt> <tt id="link-527" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-527', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-528" class="py-name" targets="Class Martel.Expression.ParseRecords=Martel.Expression.ParseRecords-class.html"><a title="Martel.Expression.ParseRecords" class="py-name" href="#" onclick="return doclink('link-528', 'ParseRecords', 'link-528');">ParseRecords</a></tt><tt class="py-op">(</tt><tt class="py-string">"dataset"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"format"</tt><tt class="py-op">:</tt> <tt class="py-string">"swissprot/38"</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt id="link-529" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-529', 'record', 'link-476');">record</a></tt><tt class="py-op">,</tt> <tt id="link-530" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-530', 'RecordReader', 'link-2');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-531" class="py-name" targets="Class Martel.RecordReader.EndsWith=Martel.RecordReader.EndsWith-class.html"><a title="Martel.RecordReader.EndsWith" class="py-name" href="#" onclick="return doclink('link-531', 'EndsWith', 'link-531');">EndsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"//\n"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> </tt>
<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt id="link-532" class="py-name" targets="Variable Bio.Affy.CelFile.exp=Bio.Affy.CelFile-module.html#exp,Variable Bio.LogisticRegression.exp=Bio.LogisticRegression-module.html#exp,Variable Bio.MarkovModel.exp=Bio.MarkovModel-module.html#exp,Variable Bio.MaxEntropy.exp=Bio.MaxEntropy-module.html#exp,Variable Bio.NaiveBayes.exp=Bio.NaiveBayes-module.html#exp,Variable Bio.Statistics.lowess.exp=Bio.Statistics.lowess-module.html#exp,Variable Bio.distance.exp=Bio.distance-module.html#exp,Variable Bio.kNN.exp=Bio.kNN-module.html#exp"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-532', 'exp', 'link-532');">exp</a></tt> <tt class="py-op">=</tt> <tt id="link-533" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-533', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-534" class="py-name" targets="Function Martel.select_names()=Martel-module.html#select_names"><a title="Martel.select_names" class="py-name" href="#" onclick="return doclink('link-534', 'select_names', 'link-534');">select_names</a></tt><tt class="py-op">(</tt><tt id="link-535" class="py-name"><a title="Bio.Restriction.Restriction.RestrictionBatch.format
Bio.expressions.blast.ncbiblast.format
Bio.expressions.blast.wublast.format
Bio.expressions.blocks.format
Bio.expressions.embl.embl65.format
Bio.expressions.fasta.format
Bio.expressions.genbank.format
Bio.expressions.hmmpfam.format
Bio.expressions.swissprot.ipi.format
Bio.expressions.swissprot.speclist.format
Bio.expressions.swissprot.sprot38.format
Bio.expressions.swissprot.sprot40.format
Bio.expressions.transfac.format
Martel.test.test_swissprot38.format
Martel.test.testformats.swissprot38.format" class="py-name" href="#" onclick="return doclink('link-535', 'format', 'link-526');">format</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"entry_name"</tt><tt class="py-op">,</tt> <tt class="py-string">"sequence"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt class="py-name">parser</tt> <tt class="py-op">=</tt> <tt id="link-536" class="py-name"><a title="Bio.Affy.CelFile.exp
Bio.LogisticRegression.exp
Bio.MarkovModel.exp
Bio.MaxEntropy.exp
Bio.NaiveBayes.exp
Bio.Statistics.lowess.exp
Bio.distance.exp
Bio.kNN.exp" class="py-name" href="#" onclick="return doclink('link-536', 'exp', 'link-532');">exp</a></tt><tt class="py-op">.</tt><tt id="link-537" class="py-name" targets="Method Bio.config.FormatRegistry.FormatObject.make_parser()=Bio.config.FormatRegistry.FormatObject-class.html#make_parser,Method Bio.config._support.make_cached_expression.make_parser()=Bio.config._support.make_cached_expression-class.html#make_parser,Method Martel.Expression.Expression.make_parser()=Martel.Expression.Expression-class.html#make_parser,Method Martel.Expression.HeaderFooter.make_parser()=Martel.Expression.HeaderFooter-class.html#make_parser,Method Martel.Expression.ParseRecords.make_parser()=Martel.Expression.ParseRecords-class.html#make_parser"><a title="Bio.config.FormatRegistry.FormatObject.make_parser
Bio.config._support.make_cached_expression.make_parser
Martel.Expression.Expression.make_parser
Martel.Expression.HeaderFooter.make_parser
Martel.Expression.ParseRecords.make_parser" class="py-name" href="#" onclick="return doclink('link-537', 'make_parser', 'link-537');">make_parser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt class="py-name">parser</tt><tt class="py-op">.</tt><tt id="link-538" class="py-name" targets="Method Bio.EUtils.POM.POMDocument.parseFile()=Bio.EUtils.POM.POMDocument-class.html#parseFile,Method Martel.Parser.HeaderFooterParser.parseFile()=Martel.Parser.HeaderFooterParser-class.html#parseFile,Method Martel.Parser.Parser.parseFile()=Martel.Parser.Parser-class.html#parseFile,Method Martel.Parser.RecordParser.parseFile()=Martel.Parser.RecordParser-class.html#parseFile"><a title="Bio.EUtils.POM.POMDocument.parseFile
Martel.Parser.HeaderFooterParser.parseFile
Martel.Parser.Parser.parseFile
Martel.Parser.RecordParser.parseFile" class="py-name" href="#" onclick="return doclink('link-538', 'parseFile', 'link-538');">parseFile</a></tt><tt class="py-op">(</tt><tt id="link-539" class="py-name" targets="Function Bio.Mindy.FlatDB.open()=Bio.Mindy.FlatDB-module.html#open,Function Bio.Mindy.open()=Bio.Mindy-module.html#open"><a title="Bio.Mindy.FlatDB.open
Bio.Mindy.open" class="py-name" href="#" onclick="return doclink('link-539', 'open', 'link-539');">open</a></tt><tt class="py-op">(</tt><tt class="py-string">"/home/dalke/ftps/swissprot/sprot38.dat"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> </tt><script type="text/javascript">
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