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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        <a href="Bio.expressions-module.html">Package&nbsp;expressions</a> ::
        <a href="Bio.expressions.swissprot-module.html">Package&nbsp;swissprot</a> ::
        Module&nbsp;sprot38
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module sprot38</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.expressions.swissprot.sprot38-pysrc.html">source&nbsp;code</a></span></p>
<p>Parser for the SWISS-PROT 38 format.</p>
  <p>You probably want to use the variables 'record' (for a single record) 
  and 'format' (for a set of records).</p>

<!-- ==================== FUNCTIONS ==================== -->
<a name="section-Functions"></a>
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        <td align="left"><span class="table-header">Functions</span></td>
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          <td><span class="summary-sig"><a name="Simple"></a><span class="summary-sig-name">Simple</span>(<span class="summary-sig-arg">tag</span>,
        <span class="summary-sig-arg">tag_data</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.expressions.swissprot.sprot38-pysrc.html#Simple">source&nbsp;code</a></span>
            
          </td>
        </tr>
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</table>
<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Variables</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-Variables"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
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  </td>
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<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#ID" class="summary-name">ID</a> = <code title="Martel.Group(&quot;ID&quot;, Martel.Str(&quot;ID   &quot;)+ Std.dbid(Martel.Word(&quot;entry_na\
me&quot;), {&quot;type&quot;: &quot;primary&quot;, &quot;dbname&quot;: &quot;sp&quot;})+ Martel.Spaces()+ Martel.Wo\
rd(&quot;data_class_table&quot;)+ Martel.Str(&quot;;&quot;)+ Martel.Spaces()+ Martel.Word(\
&quot;molecule_type&quot;)+ Martel.Str(&quot;;&quot;)+ Martel.Spaces()+ Martel.Digits(&quot;seq\
uence_length&quot;)+ Martel.Str(&quot; AA.&quot;)+ Martel.AnyEol())">Martel.Group(&quot;ID&quot;, Martel.Str(&quot;ID   &quot;)+ Std.dbid(Martel.W<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#AC" class="summary-name">AC</a> = <code title="Martel.Group(&quot;AC&quot;, Martel.Str(&quot;AC   &quot;)+ Std.dbid(Martel.Word(&quot;ac_numbe\
r&quot;), {&quot;type&quot;: &quot;accession&quot;, &quot;dbname&quot;: &quot;sp&quot;})+ Martel.Str(&quot;;&quot;)+ Martel.R\
ep(Martel.Str(&quot; &quot;)+ Std.dbid(Martel.Word(&quot;ac_number&quot;), {&quot;type&quot;: &quot;acces\
sion&quot;})+ Martel.Str(&quot;;&quot;))+ Martel.AnyEol())">Martel.Group(&quot;AC&quot;, Martel.Str(&quot;AC   &quot;)+ Std.dbid(Martel.W<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="AC_block"></a><span class="summary-name">AC_block</span> = <code title="Martel.Group(&quot;AC_block&quot;, Martel.Rep1(AC))">Martel.Group(&quot;AC_block&quot;, Martel.Rep1(AC))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DT_created" class="summary-name">DT_created</a> = <code title="Martel.Group(&quot;DT_created&quot;, Martel.Str(&quot;DT   &quot;)+ Time.make_expression(&quot;\
%(DD)-%(Jan)-%(YYYY)&quot;)+ Martel.Re(&quot; \(Rel. (?P&lt;release&gt;\d\d), Created\\
)\R&quot;))">Martel.Group(&quot;DT_created&quot;, Martel.Str(&quot;DT   &quot;)+ T<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DT_seq_update" class="summary-name">DT_seq_update</a> = <code title="Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month\
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last sequence upda\
te\)\R&quot;))">Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT  <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DT_ann_update" class="summary-name">DT_ann_update</a> = <code title="Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month\
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last annotation up\
date\)\R&quot;))">Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT  <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DE" class="summary-name">DE</a> = <code title="Martel.Group(&quot;DE&quot;, Martel.Str(&quot;DE   &quot;)+ Std.description(Martel.UntilEo\
l(&quot;description&quot;))+ Martel.AnyEol())">Martel.Group(&quot;DE&quot;, Martel.Str(&quot;DE   &quot;)+ Std.description(M<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DE_block" class="summary-name">DE_block</a> = <code title="Std.description_block(Martel.Group(&quot;DE_block&quot;, Martel.Rep1(DE)))">Std.description_block(Martel.Group(&quot;DE_block&quot;, Mart<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="GN"></a><span class="summary-name">GN</span> = <code title="Simple(&quot;GN&quot;, &quot;gene_names&quot;)">Simple(&quot;GN&quot;, &quot;gene_names&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="GN_block"></a><span class="summary-name">GN_block</span> = <code title="Martel.Group(&quot;GN_block&quot;, Martel.Rep1(GN))">Martel.Group(&quot;GN_block&quot;, Martel.Rep1(GN))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OS"></a><span class="summary-name">OS</span> = <code title="Simple(&quot;OS&quot;, &quot;organism_species&quot;)">Simple(&quot;OS&quot;, &quot;organism_species&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OS_block"></a><span class="summary-name">OS_block</span> = <code title="sprot38.OS_block">sprot38.OS_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OG"></a><span class="summary-name">OG</span> = <code title="Simple(&quot;OG&quot;, &quot;organelle&quot;)">Simple(&quot;OG&quot;, &quot;organelle&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OG_block"></a><span class="summary-name">OG_block</span> = <code title="sprot38.OG_block">sprot38.OG_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OC"></a><span class="summary-name">OC</span> = <code title="Simple(&quot;OC&quot;, &quot;organism_classification&quot;)">Simple(&quot;OC&quot;, &quot;organism_classification&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="OC_block"></a><span class="summary-name">OC_block</span> = <code title="sprot38.OC_block">sprot38.OC_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RN"></a><span class="summary-name">RN</span> = <code title="sprot38.RN">sprot38.RN</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RP"></a><span class="summary-name">RP</span> = <code title="sprot38.RP">sprot38.RP</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RC"></a><span class="summary-name">RC</span> = <code title="Simple(&quot;RC&quot;, &quot;reference_comment&quot;)">Simple(&quot;RC&quot;, &quot;reference_comment&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RC_block"></a><span class="summary-name">RC_block</span> = <code title="sprot38.RC_block">sprot38.RC_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RX"></a><span class="summary-name">RX</span> = <code title="sprot38.RX">sprot38.RX</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RA"></a><span class="summary-name">RA</span> = <code title="Simple(&quot;RA&quot;, &quot;reference_author&quot;)">Simple(&quot;RA&quot;, &quot;reference_author&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RA_block"></a><span class="summary-name">RA_block</span> = <code title="sprot38.RA_block">sprot38.RA_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RT"></a><span class="summary-name">RT</span> = <code title="Simple(&quot;RT&quot;, &quot;reference_title&quot;)">Simple(&quot;RT&quot;, &quot;reference_title&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RT_block"></a><span class="summary-name">RT_block</span> = <code title="sprot38.RT_block">sprot38.RT_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RL"></a><span class="summary-name">RL</span> = <code title="Simple(&quot;RL&quot;, &quot;reference_location&quot;)">Simple(&quot;RL&quot;, &quot;reference_location&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="RL_block"></a><span class="summary-name">RL_block</span> = <code title="sprot38.RL_block">sprot38.RL_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#reference" class="summary-name">reference</a> = <code title="Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_block)+ Martel.Opt(RX)\
+ RA_block+ Martel.Opt(RT_block)+ RL_block)">Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_bl<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#CC_begin" class="summary-name">CC_begin</a> = <code title="Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.ToEol(&quot;comment_text&quot;\
))">Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.T<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#CC" class="summary-name">CC</a> = <code title="Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;comment_text&quot;\
))">Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#single_comment" class="summary-name">single_comment</a> = <code title="Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(CC))">Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright_begin" class="summary-name">CC_copyright_begin</a> = <code title="Martel.Group(&quot;CC_copyright_begin&quot;, Martel.Re(&quot;CC   -+\R&quot;))">Martel.Group(&quot;CC_copyright_begin&quot;, Martel<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright" class="summary-name">CC_copyright</a> = <code title="Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?!-+\R)&quot;)+ Martel.ToEol(\
&quot;copyright&quot;))">Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#CC_copyright_end" class="summary-name">CC_copyright_end</a> = <code title="Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(&quot;CC   -+\R&quot;))">Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#bogus_DR_group" class="summary-name">bogus_DR_group</a> = <code title="Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?P&lt;DR&gt;DR   (?P&lt;database_id\
entifier&gt;MIM); &quot; r&quot;(?P&lt;primary_identifier&gt;601385); &quot; r&quot;(?P&lt;secondary_i\
dentifier&gt;-).\R)&quot;))">Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#comment" class="summary-name">comment</a> = <code title="Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comment)+ Martel.Opt(b\
ogus_DR_group)+ Martel.Opt(CC_copyright_begin+ Martel.Rep(CC_copyright\
)+ CC_copyright_end))">Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comm<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr class="private">
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="_to_secondary_end"></a><span class="summary-name">_to_secondary_end</span> = <code title="Martel.Re(r&quot;([^.\R]|(?!.\R)\.)+&quot;)">Martel.Re(r&quot;([^.\R]|(?!.\R)\.)+&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#database_id" class="summary-name">database_id</a> = <code title="Std.dbxref_dbname(Martel.UntilSep(&quot;database_identifier&quot;, &quot;;&quot;), {&quot;style\
&quot;: &quot;sp&quot;})">Std.dbxref_dbname(Martel.UntilSep(&quot;database_iden<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#primary_id" class="summary-name">primary_id</a> = <code title="Std.dbxref_dbid(Martel.UntilSep(&quot;primary_identifier&quot;, &quot;;&quot;), {&quot;type&quot;: &quot;\
primary&quot;})">Std.dbxref_dbid(Martel.UntilSep(&quot;primary_identifi<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#secondary_id" class="summary-name">secondary_id</a> = <code title="Std.dbxref_dbid(Martel.Group(&quot;secondary_identifier&quot;, _to_secondary_end\
), {&quot;type&quot;: &quot;accession&quot;})">Std.dbxref_dbid(Martel.Group(&quot;secondary_identif<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#real_DR_general" class="summary-name">real_DR_general</a> = <code title="Std.dbxref(database_id+ Martel.Str(&quot;; &quot;)+ primary_id+ Martel.Str(&quot;; &quot;)\
+ secondary_id,)">Std.dbxref(database_id+ Martel.Str(&quot;; &quot;)+ pr<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#fast_DR_general" class="summary-name">fast_DR_general</a> = <code title="Std.fast_dbxref(real_DR_general, {&quot;style&quot;: &quot;sp-general&quot;})">Std.fast_dbxref(real_DR_general, {&quot;style&quot;: &quot;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DR_general" class="summary-name">DR_general</a> = <code title="Martel.FastFeature(fast_DR_general, &quot;fast-sp-dbxref&quot;, real_DR_general.\
group_names())">Martel.FastFeature(fast_DR_general, &quot;fast-sp-dbxr<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#real_DR_prosite" class="summary-name">real_DR_prosite</a> = <code title="Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;database_identifier&quot;, Marte\
l.Str(&quot;PROSITE&quot;, &quot;PFAM&quot;)), {&quot;style&quot;: &quot;sp&quot;})+ Martel.Str(&quot;; &quot;)+ primary\
_id+ Martel.Str(&quot;; &quot;)+ Std.dbxref_dbid(Martel.UntilSep(sep= &quot;;&quot;), {&quot;ty\
pe&quot;: &quot;accession&quot;})+ Martel.Str(&quot;; &quot;)+ Martel.UntilSep(&quot;status_identifi\
er&quot;, &quot;.&quot;),)">Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;d<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#fast_DR_prosite" class="summary-name">fast_DR_prosite</a> = <code title="Std.fast_dbxref(real_DR_prosite, {&quot;style&quot;: &quot;sp-prosite&quot;})">Std.fast_dbxref(real_DR_prosite, {&quot;style&quot;: &quot;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DR_prosite" class="summary-name">DR_prosite</a> = <code title="Martel.FastFeature(fast_DR_prosite, &quot;fast-sp-dbxref&quot;, real_DR_prosite.\
group_names())">Martel.FastFeature(fast_DR_prosite, &quot;fast-sp-dbxr<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#real_DR_embl" class="summary-name">real_DR_embl</a> = <code title="Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;database_identifier&quot;, Marte\
l.Str(&quot;EMBL&quot;)), {&quot;style&quot;: &quot;sp&quot;})+ Martel.Str(&quot;; &quot;)+ primary_id+ Martel\
.Str(&quot;; &quot;)+ Std.dbxref_dbid(Martel.UntilSep(&quot;secondary_identifier&quot;, &quot;;\
&quot;), {&quot;type&quot;: &quot;accession&quot;})+ Martel.Str(&quot;; &quot;)+ Martel.UntilSep(&quot;status_\
identifier&quot;, &quot;.&quot;),)">Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;data<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#fast_DR_embl" class="summary-name">fast_DR_embl</a> = <code title="Std.fast_dbxref(real_DR_embl, {&quot;style&quot;: &quot;sp-embl&quot;})">Std.fast_dbxref(real_DR_embl, {&quot;style&quot;: &quot;sp-emb<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DR_embl" class="summary-name">DR_embl</a> = <code title="Martel.FastFeature(fast_DR_embl, &quot;fast-sp-dbxref&quot;, real_DR_embl.group_\
names())">Martel.FastFeature(fast_DR_embl, &quot;fast-sp-dbxref&quot;, r<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#DR" class="summary-name">DR</a> = <code title="Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;database_referen\
ce&quot;, DR_embl | DR_prosite | DR_general)+ Martel.Str(&quot;.&quot;)+ Martel.AnyEo\
l())">Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;dat<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="DR_block"></a><span class="summary-name">DR_block</span> = <code title="sprot38.DR_block">sprot38.DR_block</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="KW"></a><span class="summary-name">KW</span> = <code title="Simple(&quot;KW&quot;, &quot;keyword&quot;)">Simple(&quot;KW&quot;, &quot;keyword&quot;)</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="KW_block"></a><span class="summary-name">KW_block</span> = <code title="Martel.Group(&quot;KW_block&quot;, Martel.Rep1(KW))">Martel.Group(&quot;KW_block&quot;, Martel.Rep1(KW))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="FT_name"></a><span class="summary-name">FT_name</span> = <code title="Std.feature_name(Martel.Re(r&quot;.{8}&quot;))">Std.feature_name(Martel.Re(r&quot;.{8}&quot;))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="FT_start"></a><span class="summary-name">FT_start</span> = <code title="Std.feature_location_start(Martel.Re(r&quot;.{6}&quot;))">Std.feature_location_start(Martel.Re(r&quot;.{6}&quot;))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="FT_end"></a><span class="summary-name">FT_end</span> = <code title="Std.feature_location_end(Martel.Re(r&quot;.{6}&quot;))">Std.feature_location_end(Martel.Re(r&quot;.{6}&quot;))</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="FT_desc"></a><span class="summary-name">FT_desc</span> = <code title="Std.feature_description(Martel.UntilEol())">Std.feature_description(Martel.UntilEol())</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#FT_range" class="summary-name">FT_range</a> = <code title="Martel.Str(&quot;FT   &quot;)+ FT_name+ Martel.Str(&quot; &quot;)+ FT_start+ Martel.Str(&quot; \
&quot;)+ FT_end+ Martel.Opt(Martel.Str(&quot;       &quot;)+ FT_desc)+ Martel.AnyEol(\
)">Martel.Str(&quot;FT   &quot;)+ FT_name+ Martel.Str(&quot; &quot;)+ FT_s<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#FT_continuation" class="summary-name">FT_continuation</a> = <code title="Martel.Str(&quot;FT                                &quot;)+ FT_desc+ Martel.AnyE\
ol()">Martel.Str(&quot;FT                              <code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#FT" class="summary-name">FT</a> = <code title="Std.feature(FT_range+ Martel.Rep(FT_continuation), {&quot;location-style&quot;: \
&quot;sp&quot;})">Std.feature(FT_range+ Martel.Rep(FT_continuation), {&quot;loca<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#feature_block" class="summary-name">feature_block</a> = <code title="Std.feature_block(Martel.Rep1(FT), {&quot;style&quot;: &quot;swissprot&quot;})">Std.feature_block(Martel.Rep1(FT), {&quot;style&quot;: &quot;<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#SQ" class="summary-name">SQ</a> = <code title="Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence_length&gt;\d+) \
AA;&quot; &quot; +(?P&lt;molecular_weight&gt;\d+) MW;&quot; &quot; +(?P&lt;crc?type=32&gt;\w+) CRC32;\\
R&quot;))">Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#SQ_data" class="summary-name">SQ_data</a> = <code title="Martel.Str(&quot;     &quot;)+ Std.sequence(Martel.UntilEol())+ Martel.AnyEol()">Martel.Str(&quot;     &quot;)+ Std.sequence(Martel.UntilEol())<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#sequence" class="summary-name">sequence</a> = <code title="Std.sequence_block(SQ+ Martel.Rep(SQ_data), {&quot;alphabet&quot;: &quot;iupac-ambigu\
ous-protein&quot;})">Std.sequence_block(SQ+ Martel.Rep(SQ_data), {&quot;alpha<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="end"></a><span class="summary-name">end</span> = <code title="Martel.Group(&quot;END&quot;, Martel.Str(&quot;//&quot;)+ Martel.AnyEol())">Martel.Group(&quot;END&quot;, Martel.Str(&quot;//&quot;)+ Martel.AnyEol())</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#record" class="summary-name">record</a> = <code title="Std.record(ID+ AC_block+ DT_created+ DT_seq_update+ DT_ann_update+ Mar\
tel.Opt(DE_block)+ Martel.Opt(GN_block)+ Martel.Opt(OS_block)+ Martel.\
Opt(OG_block)+ Martel.Opt(OC_block)+ Martel.Group(&quot;OX_block&quot;, Martel.N\
ullOp())+ Martel.Group(&quot;reference_block&quot;, Martel.Rep(reference))+ comm\
ent+ Martel.Opt(DR_block)+ Martel.Opt(KW_block)+ Martel.Opt(feature_bl\
ock)+ sequence+ end, {&quot;format&quot;: &quot;swissprot/38&quot;})">Std.record(ID+ AC_block+ DT_created+ DT_seq_update+ D<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#format_expression" class="summary-name">format_expression</a> = <code title="Martel.Group(&quot;dataset&quot;, Martel.Rep1(record), {&quot;format&quot;: &quot;swissprot/38&quot;\
})">Martel.Group(&quot;dataset&quot;, Martel.Rep1(record<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#format" class="summary-name">format</a> = <code title="Martel.ParseRecords(&quot;dataset&quot;, {&quot;format&quot;: &quot;swissprot/38&quot;}, record, Rec\
ordReader.EndsWith, (&quot;//\n&quot;,))">Martel.ParseRecords(&quot;dataset&quot;, {&quot;format&quot;: &quot;swissprot/<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.expressions.swissprot.sprot38-module.html#__warningregistry__" class="summary-name">__warningregistry__</a> = <code title="{('Bio.expressions was deprecated, as it does not work with recent ver\
sions of mxTextTools. If you want to continue to use this module, plea\
se get in contact with the Biopython developers at biopython-dev@biopy\
thon.org to avoid permanent removal of this module from Biopython',
  &lt;type 'exceptions.DeprecationWarning'&gt;,
  9): 1}"><code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">Bio.expressions was deprecated, as it</code><code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
</table>
<!-- ==================== VARIABLES DETAILS ==================== -->
<a name="section-VariablesDetails"></a>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Variables Details</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-VariablesDetails"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
      </tr>
    </table>
  </td>
</tr>
</table>
<a name="ID"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">ID</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;ID&quot;, Martel.Str(&quot;ID   &quot;)+ Std.dbid(Martel.Word(&quot;entry_na<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
me&quot;), {&quot;type&quot;: &quot;primary&quot;, &quot;dbname&quot;: &quot;sp&quot;})+ Martel.Spaces()+ Martel.Wo<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
rd(&quot;data_class_table&quot;)+ Martel.Str(&quot;;&quot;)+ Martel.Spaces()+ Martel.Word(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;molecule_type&quot;)+ Martel.Str(&quot;;&quot;)+ Martel.Spaces()+ Martel.Digits(&quot;seq<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
uence_length&quot;)+ Martel.Str(&quot; AA.&quot;)+ Martel.AnyEol())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="AC"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">AC</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;AC&quot;, Martel.Str(&quot;AC   &quot;)+ Std.dbid(Martel.Word(&quot;ac_numbe<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
r&quot;), {&quot;type&quot;: &quot;accession&quot;, &quot;dbname&quot;: &quot;sp&quot;})+ Martel.Str(&quot;;&quot;)+ Martel.R<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ep(Martel.Str(&quot; &quot;)+ Std.dbid(Martel.Word(&quot;ac_number&quot;), {&quot;type&quot;: &quot;acces<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
sion&quot;})+ Martel.Str(&quot;;&quot;))+ Martel.AnyEol())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_created"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_created</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_created&quot;, Martel.Str(&quot;DT   &quot;)+ Time.make_expression(&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
%(DD)-%(Jan)-%(YYYY)&quot;)+ Martel.Re(&quot; \(Rel. (?P&lt;release&gt;\d\d), Created\<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_seq_update"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_seq_update</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_seq_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last sequence upda<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
te\)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DT_ann_update"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DT_ann_update</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DT_ann_update&quot;, Martel.Re(r&quot;DT   (?P&lt;day&gt;\d\d)-(?P&lt;month<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&gt;...)-(?P&lt;year&gt;\d{4}) \(Rel. &quot; r&quot;(?P&lt;release&gt;\d\d), Last annotation up<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
date\)\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DE"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DE</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DE&quot;, Martel.Str(&quot;DE   &quot;)+ Std.description(Martel.UntilEo<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
l(&quot;description&quot;))+ Martel.AnyEol())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DE_block"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DE_block</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.description_block(Martel.Group(&quot;DE_block&quot;, Martel.Rep1(DE)))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="reference"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">reference</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;reference&quot;, RN+ RP+ Martel.Opt(RC_block)+ Martel.Opt(RX)<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
+ RA_block+ Martel.Opt(RT_block)+ RL_block)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_begin"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_begin</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC   -!- &quot;)+ Martel.ToEol(&quot;comment_text&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC&quot;, Martel.Re(&quot;CC       &quot;)+ Martel.ToEol(&quot;comment_text&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="single_comment"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">single_comment</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment&quot;, CC_begin+ Martel.Rep(CC))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright_begin"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright_begin</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright_begin&quot;, Martel.Re(&quot;CC   -+\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright&quot;, Martel.Re(&quot;CC   (?!-+\R)&quot;)+ Martel.ToEol(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;copyright&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="CC_copyright_end"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">CC_copyright_end</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;CC_copyright_end&quot;, Martel.Re(&quot;CC   -+\R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="bogus_DR_group"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">bogus_DR_group</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;bogus_DR_block&quot;, Martel.Re(r&quot;(?P&lt;DR&gt;DR   (?P&lt;database_id<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
entifier&gt;MIM); &quot; r&quot;(?P&lt;primary_identifier&gt;601385); &quot; r&quot;(?P&lt;secondary_i<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
dentifier&gt;-).\R)&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="comment"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">comment</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment_block&quot;, Martel.Rep(single_comment)+ Martel.Opt(b<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ogus_DR_group)+ Martel.Opt(CC_copyright_begin+ Martel.Rep(CC_copyright<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
)+ CC_copyright_end))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="database_id"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">database_id</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref_dbname(Martel.UntilSep(&quot;database_identifier&quot;, &quot;;&quot;), {&quot;style<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;: &quot;sp&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="primary_id"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">primary_id</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref_dbid(Martel.UntilSep(&quot;primary_identifier&quot;, &quot;;&quot;), {&quot;type&quot;: &quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
primary&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="secondary_id"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">secondary_id</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref_dbid(Martel.Group(&quot;secondary_identifier&quot;, _to_secondary_end<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
), {&quot;type&quot;: &quot;accession&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="real_DR_general"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">real_DR_general</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref(database_id+ Martel.Str(&quot;; &quot;)+ primary_id+ Martel.Str(&quot;; &quot;)<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
+ secondary_id,)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="fast_DR_general"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">fast_DR_general</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.fast_dbxref(real_DR_general, {&quot;style&quot;: &quot;sp-general&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_general"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_general</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.FastFeature(fast_DR_general, &quot;fast-sp-dbxref&quot;, real_DR_general.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
group_names())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="real_DR_prosite"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">real_DR_prosite</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;database_identifier&quot;, Marte<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
l.Str(&quot;PROSITE&quot;, &quot;PFAM&quot;)), {&quot;style&quot;: &quot;sp&quot;})+ Martel.Str(&quot;; &quot;)+ primary<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
_id+ Martel.Str(&quot;; &quot;)+ Std.dbxref_dbid(Martel.UntilSep(sep= &quot;;&quot;), {&quot;ty<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
pe&quot;: &quot;accession&quot;})+ Martel.Str(&quot;; &quot;)+ Martel.UntilSep(&quot;status_identifi<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
er&quot;, &quot;.&quot;),)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="fast_DR_prosite"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">fast_DR_prosite</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.fast_dbxref(real_DR_prosite, {&quot;style&quot;: &quot;sp-prosite&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_prosite"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_prosite</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.FastFeature(fast_DR_prosite, &quot;fast-sp-dbxref&quot;, real_DR_prosite.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
group_names())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="real_DR_embl"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">real_DR_embl</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.dbxref(Std.dbxref_dbname(Martel.Group(&quot;database_identifier&quot;, Marte<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
l.Str(&quot;EMBL&quot;)), {&quot;style&quot;: &quot;sp&quot;})+ Martel.Str(&quot;; &quot;)+ primary_id+ Martel<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
.Str(&quot;; &quot;)+ Std.dbxref_dbid(Martel.UntilSep(&quot;secondary_identifier&quot;, &quot;;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;), {&quot;type&quot;: &quot;accession&quot;})+ Martel.Str(&quot;; &quot;)+ Martel.UntilSep(&quot;status_<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
identifier&quot;, &quot;.&quot;),)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="fast_DR_embl"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">fast_DR_embl</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.fast_dbxref(real_DR_embl, {&quot;style&quot;: &quot;sp-embl&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR_embl"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR_embl</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.FastFeature(fast_DR_embl, &quot;fast-sp-dbxref&quot;, real_DR_embl.group_<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
names())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="DR"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">DR</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;DR&quot;, Martel.Str(&quot;DR   &quot;)+ Martel.Group(&quot;database_referen<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ce&quot;, DR_embl | DR_prosite | DR_general)+ Martel.Str(&quot;.&quot;)+ Martel.AnyEo<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
l())
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT_range"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT_range</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Str(&quot;FT   &quot;)+ FT_name+ Martel.Str(&quot; &quot;)+ FT_start+ Martel.Str(&quot; <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;)+ FT_end+ Martel.Opt(Martel.Str(&quot;       &quot;)+ FT_desc)+ Martel.AnyEol(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT_continuation"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT_continuation</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Str(&quot;FT                                &quot;)+ FT_desc+ Martel.AnyE<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ol()
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="FT"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">FT</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.feature(FT_range+ Martel.Rep(FT_continuation), {&quot;location-style&quot;: <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;sp&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="feature_block"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">feature_block</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.feature_block(Martel.Rep1(FT), {&quot;style&quot;: &quot;swissprot&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="SQ"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">SQ</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;SQ&quot;, Martel.Re(&quot;SQ   SEQUENCE +(?P&lt;sequence_length&gt;\d+) <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
AA;&quot; &quot; +(?P&lt;molecular_weight&gt;\d+) MW;&quot; &quot; +(?P&lt;crc?type=32&gt;\w+) CRC32;\<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
R&quot;))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="SQ_data"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">SQ_data</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Str(&quot;     &quot;)+ Std.sequence(Martel.UntilEol())+ Martel.AnyEol()
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="sequence"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">sequence</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.sequence_block(SQ+ Martel.Rep(SQ_data), {&quot;alphabet&quot;: &quot;iupac-ambigu<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ous-protein&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="record"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">record</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Std.record(ID+ AC_block+ DT_created+ DT_seq_update+ DT_ann_update+ Mar<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
tel.Opt(DE_block)+ Martel.Opt(GN_block)+ Martel.Opt(OS_block)+ Martel.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Opt(OG_block)+ Martel.Opt(OC_block)+ Martel.Group(&quot;OX_block&quot;, Martel.N<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ullOp())+ Martel.Group(&quot;reference_block&quot;, Martel.Rep(reference))+ comm<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ent+ Martel.Opt(DR_block)+ Martel.Opt(KW_block)+ Martel.Opt(feature_bl<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ock)+ sequence+ end, {&quot;format&quot;: &quot;swissprot/38&quot;})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="format_expression"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">format_expression</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;dataset&quot;, Martel.Rep1(record), {&quot;format&quot;: &quot;swissprot/38&quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
})
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="format"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">format</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.ParseRecords(&quot;dataset&quot;, {&quot;format&quot;: &quot;swissprot/38&quot;}, record, Rec<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ordReader.EndsWith, (&quot;//\n&quot;,))
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="__warningregistry__"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">__warningregistry__</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">Bio.expressions was deprecated, as it does not work with recent ver</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
<code class="variable-string">sions of mxTextTools. If you want to continue to use this module, plea</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
<code class="variable-string">se get in contact with the Biopython developers at biopython-dev@biopy</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
<code class="variable-string">thon.org to avoid permanent removal of this module from Biopython</code><code class="variable-quote">'</code><code class="variable-op">,</code>
  &lt;type 'exceptions.DeprecationWarning'&gt;<code class="variable-op">,</code>
  9<code class="variable-group">)</code><code class="variable-op">: </code>1<code class="variable-group">}</code>
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
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