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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.expressions-module.html">Package expressions</a> ::
Module genbank
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<h1 class="epydoc">Source Code for <a href="Bio.expressions.genbank-module.html">Module Bio.expressions.genbank</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""Martel based parser to read GenBank formatted files.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">This is a huge regular regular expression for GenBank, built using</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">the 'regular expressions on steroids' capabilities of Martel.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">Documentation for GenBank format that I found:</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">o GenBank/EMBL feature tables are described at:</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">o There are also descriptions of different GenBank lines at:</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">http://www.ibc.wustl.edu/standards/gbrel.txt</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"Bio.expressions was deprecated, as it does not work with recent versions of mxTextTools. If you want to continue to use this module, please get in contact with the Biopython developers at biopython-dev@biopython.org to avoid permanent removal of this module from Biopython"</tt><tt class="py-op">,</tt> <tt class="py-name">DeprecationWarning</tt><tt class="py-op">)</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-comment"># Martel</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-1', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module Martel.RecordReader=Martel.RecordReader-module.html,Class Martel.RecordReader.RecordReader=Martel.RecordReader.RecordReader-class.html"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-2', 'RecordReader', 'link-2');">RecordReader</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-comment"># identify certain items as important for format converters</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-3', 'Bio', 'link-3');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Module Bio.Std=Bio.Std-module.html"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-4', 'Std', 'link-4');">Std</a></tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-comment"># --- first set up some helper constants and functions</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-comment"># - useful constants for dealing with the blank space in GenBank documents</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># this is useful since blank space can be significant in GenBank flat files.</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-5" class="py-name" targets="Variable Bio.LocusLink.locus_format.INDENT=Bio.LocusLink.locus_format-module.html#INDENT,Variable Bio.expressions.genbank.INDENT=Bio.expressions.genbank-module.html#INDENT"><a title="Bio.LocusLink.locus_format.INDENT
Bio.expressions.genbank.INDENT" class="py-name" href="#" onclick="return doclink('link-5', 'INDENT', 'link-5');">INDENT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">12</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt id="link-6" class="py-name" targets="Variable Bio.GenBank.FEATURE_KEY_INDENT=Bio.GenBank-module.html#FEATURE_KEY_INDENT,Variable Bio.expressions.genbank.FEATURE_KEY_INDENT=Bio.expressions.genbank-module.html#FEATURE_KEY_INDENT"><a title="Bio.GenBank.FEATURE_KEY_INDENT
Bio.expressions.genbank.FEATURE_KEY_INDENT" class="py-name" href="#" onclick="return doclink('link-6', 'FEATURE_KEY_INDENT', 'link-6');">FEATURE_KEY_INDENT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">5</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable Bio.GenBank.FEATURE_QUALIFIER_INDENT=Bio.GenBank-module.html#FEATURE_QUALIFIER_INDENT,Variable Bio.GenBank.Scanner.EmblScanner.FEATURE_QUALIFIER_INDENT=Bio.GenBank.Scanner.EmblScanner-class.html#FEATURE_QUALIFIER_INDENT,Variable Bio.GenBank.Scanner.GenBankScanner.FEATURE_QUALIFIER_INDENT=Bio.GenBank.Scanner.GenBankScanner-class.html#FEATURE_QUALIFIER_INDENT,Variable Bio.GenBank.Scanner.InsdcScanner.FEATURE_QUALIFIER_INDENT=Bio.GenBank.Scanner.InsdcScanner-class.html#FEATURE_QUALIFIER_INDENT,Variable Bio.expressions.genbank.FEATURE_QUALIFIER_INDENT=Bio.expressions.genbank-module.html#FEATURE_QUALIFIER_INDENT"><a title="Bio.GenBank.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.EmblScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.GenBankScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.InsdcScanner.FEATURE_QUALIFIER_INDENT
Bio.expressions.genbank.FEATURE_QUALIFIER_INDENT" class="py-name" href="#" onclick="return doclink('link-7', 'FEATURE_QUALIFIER_INDENT', 'link-7');">FEATURE_QUALIFIER_INDENT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">21</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt id="link-8" class="py-name" targets="Variable Bio.MetaTool.metatool_format.blank_space=Bio.MetaTool.metatool_format-module.html#blank_space,Variable Bio.expressions.genbank.blank_space=Bio.expressions.genbank-module.html#blank_space"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-8', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">=</tt> <tt id="link-9" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-9', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Function Martel.Spaces()=Martel-module.html#Spaces"><a title="Martel.Spaces" class="py-name" href="#" onclick="return doclink('link-10', 'Spaces', 'link-10');">Spaces</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable Bio.expressions.genbank.small_indent_space=Bio.expressions.genbank-module.html#small_indent_space"><a title="Bio.expressions.genbank.small_indent_space" class="py-name" href="#" onclick="return doclink('link-11', 'small_indent_space', 'link-11');">small_indent_space</a></tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-12', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-13', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Variable Bio.expressions.genbank.big_indent_space=Bio.expressions.genbank-module.html#big_indent_space"><a title="Bio.expressions.genbank.big_indent_space" class="py-name" href="#" onclick="return doclink('link-14', 'big_indent_space', 'link-14');">big_indent_space</a></tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-15', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-16', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt id="link-17" class="py-name"><a title="Bio.GenBank.FEATURE_KEY_INDENT
Bio.expressions.genbank.FEATURE_KEY_INDENT" class="py-name" href="#" onclick="return doclink('link-17', 'FEATURE_KEY_INDENT', 'link-6');">FEATURE_KEY_INDENT</a></tt><tt class="py-op">)</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt id="link-18" class="py-name" targets="Variable Bio.expressions.genbank.qualifier_space=Bio.expressions.genbank-module.html#qualifier_space"><a title="Bio.expressions.genbank.qualifier_space" class="py-name" href="#" onclick="return doclink('link-18', 'qualifier_space', 'link-18');">qualifier_space</a></tt> <tt class="py-op">=</tt> <tt id="link-19" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-19', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-20', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt id="link-21" class="py-name"><a title="Bio.GenBank.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.EmblScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.GenBankScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.InsdcScanner.FEATURE_QUALIFIER_INDENT
Bio.expressions.genbank.FEATURE_QUALIFIER_INDENT" class="py-name" href="#" onclick="return doclink('link-21', 'FEATURE_QUALIFIER_INDENT', 'link-7');">FEATURE_QUALIFIER_INDENT</a></tt><tt class="py-op">)</tt> <tt class="py-op">|</tt> \ </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt id="link-22" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-22', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-23', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"\t"</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt id="link-24" class="py-name"><a title="Bio.GenBank.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.EmblScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.GenBankScanner.FEATURE_QUALIFIER_INDENT
Bio.GenBank.Scanner.InsdcScanner.FEATURE_QUALIFIER_INDENT
Bio.expressions.genbank.FEATURE_QUALIFIER_INDENT" class="py-name" href="#" onclick="return doclink('link-24', 'FEATURE_QUALIFIER_INDENT', 'link-7');">FEATURE_QUALIFIER_INDENT</a></tt> <tt class="py-op">-</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt class="py-comment"># - useful functions</tt> </tt>
<a name="define_block"></a><div id="define_block-def"><a name="L41"></a><tt class="py-lineno"> 41</tt> <a class="py-toggle" href="#" id="define_block-toggle" onclick="return toggle('define_block');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.expressions.genbank-module.html#define_block">define_block</a><tt class="py-op">(</tt><tt class="py-param">identifier</tt><tt class="py-op">,</tt> <tt class="py-param">block_tag</tt><tt class="py-op">,</tt> <tt class="py-param">block_data</tt><tt class="py-op">,</tt> <tt class="py-param">std_block_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-param">std_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="define_block-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="define_block-expanded"><a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-docstring">"""Define a Martel grouping which can parse a block of text.</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt class="py-docstring"> Many of the GenBank lines we'll want to process are grouped into</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-docstring"> a block like:</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-docstring"> IDENTIFIER Blah blah blah</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt class="py-docstring"> Where blah blah blah can wrap for multiple lines. This function makes</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"><tt class="py-docstring"> it easy to consistently define a definition for these blocks.</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-docstring"> Arguments:</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-docstring"> o identifier - The identifier that begins the block (like DEFINITION).</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-docstring"> o block_tag - A callback tag for the entire block.</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-docstring"> o block_data - A callback tag for the data in the block (ie. the</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt class="py-docstring"> stuff you are interested in).</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"><tt class="py-docstring"> o std_block_tag - A Bio.Std Martel tag used to register the entire</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt class="py-docstring"> block as having being a "standard" type of information.</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt class="py-docstring"> o std_tag - A Bio.Std Martel tag used to register just the information</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"><tt class="py-docstring"> in the block as being "standard"</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">diff</tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Bio.LocusLink.locus_format.INDENT
Bio.expressions.genbank.INDENT" class="py-name" href="#" onclick="return doclink('link-25', 'INDENT', 'link-5');">INDENT</a></tt> <tt class="py-op">-</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-26" class="py-name" targets="Variable Bio.expressions.blocks.identifier=Bio.expressions.blocks-module.html#identifier"><a title="Bio.expressions.blocks.identifier" class="py-name" href="#" onclick="return doclink('link-26', 'identifier', 'link-26');">identifier</a></tt><tt class="py-op">)</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">diff</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">diff</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-comment"># if no std_tag info is defined, just make std_tag a no-op function</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">std_tag</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">do_nothing</tt><tt class="py-op">(</tt><tt class="py-param">martel_info</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">martel_info</tt> </tt>
</div><a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">std_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">do_nothing</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">identifier_and_text</tt> <tt class="py-op">=</tt> <tt id="link-27" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-27', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-28', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt id="link-29" class="py-name"><a title="Bio.expressions.blocks.identifier" class="py-name" href="#" onclick="return doclink('link-29', 'identifier', 'link-26');">identifier</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt id="link-30" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-30', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-31" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-31', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-32" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-32', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-33', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">std_tag</tt><tt class="py-op">(</tt><tt id="link-34" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-34', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-35" class="py-name" targets="Function Martel.UntilEol()=Martel-module.html#UntilEol"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-35', 'UntilEol', 'link-35');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-name">block_data</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt id="link-36" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-36', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-37" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-37', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">indented_text</tt> <tt class="py-op">=</tt> <tt id="link-38" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-38', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-39', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">*</tt><tt id="link-40" class="py-name"><a title="Bio.LocusLink.locus_format.INDENT
Bio.expressions.genbank.INDENT" class="py-name" href="#" onclick="return doclink('link-40', 'INDENT', 'link-5');">INDENT</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-name">std_tag</tt><tt class="py-op">(</tt><tt id="link-41" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-41', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-42', 'UntilEol', 'link-35');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-name">block_data</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-43', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-44', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">block_info</tt> <tt class="py-op">=</tt> <tt id="link-45" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-45', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-46" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-46', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">block_tag</tt><tt class="py-op">,</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">identifier_and_text</tt> <tt class="py-op">+</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-47" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-47', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-48', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-49" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-49', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Function Martel.Alt()=Martel-module.html#Alt,Class Martel.Expression.Alt=Martel.Expression.Alt-class.html"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-50', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt id="link-51" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-51', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-52', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">indented_text</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-comment"># tag the info as some standard Martel element if specified</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">std_block_tag</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">block_info</tt> <tt class="py-op">=</tt> <tt class="py-name">std_block_tag</tt><tt class="py-op">(</tt><tt class="py-name">block_info</tt><tt class="py-op">)</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">block_info</tt> </tt>
</div><a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"><tt class="py-comment"># first line</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># LOCUS AC007323 86436 bp DNA PLN 19-JAN-2000</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-53" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.locus()=Bio.GenBank._FeatureConsumer-class.html#locus,Method Bio.GenBank._RecordConsumer.locus()=Bio.GenBank._RecordConsumer-class.html#locus,Variable Bio.expressions.genbank.locus=Bio.expressions.genbank-module.html#locus"><a title="Bio.GenBank._FeatureConsumer.locus
Bio.GenBank._RecordConsumer.locus
Bio.expressions.genbank.locus" class="py-name" href="#" onclick="return doclink('link-53', 'locus', 'link-53');">locus</a></tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-54', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-55', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"locus"</tt><tt class="py-op">,</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt id="link-56" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-56', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Function Martel.Re()=Martel-module.html#Re"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-57', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"[\w\-]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt id="link-58" class="py-name" targets="Method Bio.Affy.CelFile.CelRecord.size()=Bio.Affy.CelFile.CelRecord-class.html#size,Variable Bio.Alphabet.Alphabet.size=Bio.Alphabet.Alphabet-class.html#size,Variable Bio.Alphabet.Reduced.HPModel.size=Bio.Alphabet.Reduced.HPModel-class.html#size,Variable Bio.Alphabet.Reduced.Murphy10.size=Bio.Alphabet.Reduced.Murphy10-class.html#size,Variable Bio.Alphabet.Reduced.Murphy15.size=Bio.Alphabet.Reduced.Murphy15-class.html#size,Variable Bio.Alphabet.Reduced.Murphy4.size=Bio.Alphabet.Reduced.Murphy4-class.html#size,Variable Bio.Alphabet.Reduced.Murphy8.size=Bio.Alphabet.Reduced.Murphy8-class.html#size,Variable Bio.Alphabet.Reduced.PC5.size=Bio.Alphabet.Reduced.PC5-class.html#size,Variable Bio.Alphabet.SingleLetterAlphabet.size=Bio.Alphabet.SingleLetterAlphabet-class.html#size,Variable Bio.Alphabet.ThreeLetterProtein.size=Bio.Alphabet.ThreeLetterProtein-class.html#size,Method Bio.GenBank._FeatureConsumer.size()=Bio.GenBank._FeatureConsumer-class.html#size,Method Bio.GenBank._RecordConsumer.size()=Bio.GenBank._RecordConsumer-class.html#size,Variable Bio.expressions.genbank.size=Bio.expressions.genbank-module.html#size"><a title="Bio.Affy.CelFile.CelRecord.size
Bio.Alphabet.Alphabet.size
Bio.Alphabet.Reduced.HPModel.size
Bio.Alphabet.Reduced.Murphy10.size
Bio.Alphabet.Reduced.Murphy15.size
Bio.Alphabet.Reduced.Murphy4.size
Bio.Alphabet.Reduced.Murphy8.size
Bio.Alphabet.Reduced.PC5.size
Bio.Alphabet.SingleLetterAlphabet.size
Bio.Alphabet.ThreeLetterProtein.size
Bio.GenBank._FeatureConsumer.size
Bio.GenBank._RecordConsumer.size
Bio.expressions.genbank.size" class="py-name" href="#" onclick="return doclink('link-58', 'size', 'link-58');">size</a></tt> <tt class="py-op">=</tt> <tt id="link-59" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-59', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-60', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"size"</tt><tt class="py-op">,</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-61', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-62" class="py-name" targets="Function Martel.Rep1()=Martel-module.html#Rep1"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-62', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-63" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-63', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-64" class="py-name" targets="Class Bio.Decode.Integer=Bio.Decode.Integer-class.html,Class Bio.GenBank.LocationParser.Integer=Bio.GenBank.LocationParser.Integer-class.html,Function Martel.Integer()=Martel-module.html#Integer"><a title="Bio.Decode.Integer
Bio.GenBank.LocationParser.Integer
Martel.Integer" class="py-name" href="#" onclick="return doclink('link-64', 'Integer', 'link-64');">Integer</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-comment"># deal with the different kinds of residues we can have</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-65" class="py-name" targets="Variable Bio.expressions.genbank.valid_residue_prefixes=Bio.expressions.genbank-module.html#valid_residue_prefixes"><a title="Bio.expressions.genbank.valid_residue_prefixes" class="py-name" href="#" onclick="return doclink('link-65', 'valid_residue_prefixes', 'link-65');">valid_residue_prefixes</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"ss-"</tt><tt class="py-op">,</tt> <tt class="py-string">"ds-"</tt><tt class="py-op">,</tt> <tt class="py-string">"ms-"</tt><tt class="py-op">]</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt id="link-66" class="py-name" targets="Variable Bio.expressions.genbank.valid_residue_types=Bio.expressions.genbank-module.html#valid_residue_types"><a title="Bio.expressions.genbank.valid_residue_types" class="py-name" href="#" onclick="return doclink('link-66', 'valid_residue_types', 'link-66');">valid_residue_types</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"DNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"RNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"mRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"tRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"rRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"uRNA"</tt><tt class="py-op">,</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-string">"scRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"snRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"snoRNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"PROTEIN"</tt><tt class="py-op">]</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt id="link-67" class="py-name" targets="Variable Bio.expressions.genbank.residue_prefixes=Bio.expressions.genbank-module.html#residue_prefixes"><a title="Bio.expressions.genbank.residue_prefixes" class="py-name" href="#" onclick="return doclink('link-67', 'residue_prefixes', 'link-67');">residue_prefixes</a></tt> <tt class="py-op">=</tt> <tt id="link-68" class="py-name" targets="Method Bio.GFF.FeatureAggregate.map()=Bio.GFF.FeatureAggregate-class.html#map"><a title="Bio.GFF.FeatureAggregate.map" class="py-name" href="#" onclick="return doclink('link-68', 'map', 'link-68');">map</a></tt><tt class="py-op">(</tt><tt id="link-69" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-69', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-70', 'Str', 'link-13');">Str</a></tt><tt class="py-op">,</tt> <tt id="link-71" class="py-name"><a title="Bio.expressions.genbank.valid_residue_prefixes" class="py-name" href="#" onclick="return doclink('link-71', 'valid_residue_prefixes', 'link-65');">valid_residue_prefixes</a></tt><tt class="py-op">)</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"><tt id="link-72" class="py-name" targets="Variable Bio.expressions.genbank.residue_types=Bio.expressions.genbank-module.html#residue_types"><a title="Bio.expressions.genbank.residue_types" class="py-name" href="#" onclick="return doclink('link-72', 'residue_types', 'link-72');">residue_types</a></tt> <tt class="py-op">=</tt> <tt id="link-73" class="py-name"><a title="Bio.GFF.FeatureAggregate.map" class="py-name" href="#" onclick="return doclink('link-73', 'map', 'link-68');">map</a></tt><tt class="py-op">(</tt><tt id="link-74" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-74', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-75', 'Str', 'link-13');">Str</a></tt><tt class="py-op">,</tt> <tt id="link-76" class="py-name"><a title="Bio.expressions.genbank.valid_residue_types" class="py-name" href="#" onclick="return doclink('link-76', 'valid_residue_types', 'link-66');">valid_residue_types</a></tt><tt class="py-op">)</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt id="link-77" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.residue_type()=Bio.GenBank._FeatureConsumer-class.html#residue_type,Method Bio.GenBank._RecordConsumer.residue_type()=Bio.GenBank._RecordConsumer-class.html#residue_type,Variable Bio.expressions.genbank.residue_type=Bio.expressions.genbank-module.html#residue_type"><a title="Bio.GenBank._FeatureConsumer.residue_type
Bio.GenBank._RecordConsumer.residue_type
Bio.expressions.genbank.residue_type" class="py-name" href="#" onclick="return doclink('link-77', 'residue_type', 'link-77');">residue_type</a></tt> <tt class="py-op">=</tt> <tt id="link-78" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-78', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-79', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"residue_type"</tt><tt class="py-op">,</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-80" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-80', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-81" class="py-name" targets="Function Martel.Opt()=Martel-module.html#Opt"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-81', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-82" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-82', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-83', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt id="link-84" class="py-name"><a title="Bio.expressions.genbank.residue_prefixes" class="py-name" href="#" onclick="return doclink('link-84', 'residue_prefixes', 'link-67');">residue_prefixes</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt id="link-85" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-85', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-86', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-87" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-87', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-88', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt id="link-89" class="py-name"><a title="Bio.expressions.genbank.residue_types" class="py-name" href="#" onclick="return doclink('link-89', 'residue_types', 'link-72');">residue_types</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-90" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-90', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-91', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-92" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-92', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-93', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-94" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-94', 'blank_space', 'link-8');">blank_space</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt id="link-95" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-95', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-96', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-97', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-98', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"circular"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt id="link-99" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-99', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-100', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"linear"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt id="link-101" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.date()=Bio.GenBank._FeatureConsumer-class.html#date,Method Bio.GenBank._RecordConsumer.date()=Bio.GenBank._RecordConsumer-class.html#date,Method Bio.Prosite._RecordConsumer.date()=Bio.Prosite._RecordConsumer-class.html#date,Method Bio.SwissProt.SProt._RecordConsumer.date()=Bio.SwissProt.SProt._RecordConsumer-class.html#date,Method Bio.SwissProt.SProt._SequenceConsumer.date()=Bio.SwissProt.SProt._SequenceConsumer-class.html#date,Variable Bio.expressions.embl.embl65.date=Bio.expressions.embl.embl65-module.html#date,Variable Bio.expressions.genbank.date=Bio.expressions.genbank-module.html#date"><a title="Bio.GenBank._FeatureConsumer.date
Bio.GenBank._RecordConsumer.date
Bio.Prosite._RecordConsumer.date
Bio.SwissProt.SProt._RecordConsumer.date
Bio.SwissProt.SProt._SequenceConsumer.date
Bio.expressions.embl.embl65.date
Bio.expressions.genbank.date" class="py-name" href="#" onclick="return doclink('link-101', 'date', 'link-101');">date</a></tt> <tt class="py-op">=</tt> <tt id="link-102" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-102', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-103', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"date"</tt><tt class="py-op">,</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt id="link-104" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-104', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-105', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[-\w]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-comment"># the PLN, etc stuff indicates data file divisions</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-106" class="py-name" targets="Variable Bio.expressions.genbank.valid_divisions=Bio.expressions.genbank-module.html#valid_divisions"><a title="Bio.expressions.genbank.valid_divisions" class="py-name" href="#" onclick="return doclink('link-106', 'valid_divisions', 'link-106');">valid_divisions</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"PRI"</tt><tt class="py-op">,</tt> <tt class="py-string">"ROD"</tt><tt class="py-op">,</tt> <tt class="py-string">"MAM"</tt><tt class="py-op">,</tt> <tt class="py-string">"VRT"</tt><tt class="py-op">,</tt> <tt class="py-string">"INV"</tt><tt class="py-op">,</tt> <tt class="py-string">"PLN"</tt><tt class="py-op">,</tt> <tt class="py-string">"BCT"</tt><tt class="py-op">,</tt> <tt class="py-string">"RNA"</tt><tt class="py-op">,</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-string">"VRL"</tt><tt class="py-op">,</tt> <tt class="py-string">"PHG"</tt><tt class="py-op">,</tt> <tt class="py-string">"SYN"</tt><tt class="py-op">,</tt> <tt class="py-string">"UNA"</tt><tt class="py-op">,</tt> <tt class="py-string">"EST"</tt><tt class="py-op">,</tt> <tt class="py-string">"PAT"</tt><tt class="py-op">,</tt> <tt class="py-string">"STS"</tt><tt class="py-op">,</tt> <tt class="py-string">"GSS"</tt><tt class="py-op">,</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-string">"HTG"</tt><tt class="py-op">,</tt> <tt class="py-string">"HTC"</tt><tt class="py-op">,</tt> <tt class="py-string">"CON"</tt><tt class="py-op">,</tt> <tt class="py-string">"ENV"</tt><tt class="py-op">]</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"><tt id="link-107" class="py-name" targets="Variable Bio.expressions.embl.embl65.divisions=Bio.expressions.embl.embl65-module.html#divisions,Variable Bio.expressions.genbank.divisions=Bio.expressions.genbank-module.html#divisions"><a title="Bio.expressions.embl.embl65.divisions
Bio.expressions.genbank.divisions" class="py-name" href="#" onclick="return doclink('link-107', 'divisions', 'link-107');">divisions</a></tt> <tt class="py-op">=</tt> <tt id="link-108" class="py-name"><a title="Bio.GFF.FeatureAggregate.map" class="py-name" href="#" onclick="return doclink('link-108', 'map', 'link-68');">map</a></tt><tt class="py-op">(</tt><tt id="link-109" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-109', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-110', 'Str', 'link-13');">Str</a></tt><tt class="py-op">,</tt> <tt id="link-111" class="py-name"><a title="Bio.expressions.genbank.valid_divisions" class="py-name" href="#" onclick="return doclink('link-111', 'valid_divisions', 'link-106');">valid_divisions</a></tt><tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt id="link-112" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.data_file_division()=Bio.GenBank._FeatureConsumer-class.html#data_file_division,Method Bio.GenBank._RecordConsumer.data_file_division()=Bio.GenBank._RecordConsumer-class.html#data_file_division,Variable Bio.expressions.genbank.data_file_division=Bio.expressions.genbank-module.html#data_file_division"><a title="Bio.GenBank._FeatureConsumer.data_file_division
Bio.GenBank._RecordConsumer.data_file_division
Bio.expressions.genbank.data_file_division" class="py-name" href="#" onclick="return doclink('link-112', 'data_file_division', 'link-112');">data_file_division</a></tt> <tt class="py-op">=</tt> <tt id="link-113" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-113', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-114', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"data_file_division"</tt><tt class="py-op">,</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt id="link-115" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-115', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-116', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt id="link-117" class="py-name"><a title="Bio.expressions.embl.embl65.divisions
Bio.expressions.genbank.divisions" class="py-name" href="#" onclick="return doclink('link-117', 'divisions', 'link-107');">divisions</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt id="link-118" class="py-name" targets="Variable Bio.LocusLink.locus_format.locus_line=Bio.LocusLink.locus_format-module.html#locus_line,Variable Bio.expressions.genbank.locus_line=Bio.expressions.genbank-module.html#locus_line"><a title="Bio.LocusLink.locus_format.locus_line
Bio.expressions.genbank.locus_line" class="py-name" href="#" onclick="return doclink('link-118', 'locus_line', 'link-118');">locus_line</a></tt> <tt class="py-op">=</tt> <tt id="link-119" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-119', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-120', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"locus_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-121" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-121', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-122', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"LOCUS"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-123" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-123', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt id="link-124" class="py-name"><a title="Bio.GenBank._FeatureConsumer.locus
Bio.GenBank._RecordConsumer.locus
Bio.expressions.genbank.locus" class="py-name" href="#" onclick="return doclink('link-124', 'locus', 'link-53');">locus</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt id="link-125" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-125', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt id="link-126" class="py-name"><a title="Bio.Affy.CelFile.CelRecord.size
Bio.Alphabet.Alphabet.size
Bio.Alphabet.Reduced.HPModel.size
Bio.Alphabet.Reduced.Murphy10.size
Bio.Alphabet.Reduced.Murphy15.size
Bio.Alphabet.Reduced.Murphy4.size
Bio.Alphabet.Reduced.Murphy8.size
Bio.Alphabet.Reduced.PC5.size
Bio.Alphabet.SingleLetterAlphabet.size
Bio.Alphabet.ThreeLetterProtein.size
Bio.GenBank._FeatureConsumer.size
Bio.GenBank._RecordConsumer.size
Bio.expressions.genbank.size" class="py-name" href="#" onclick="return doclink('link-126', 'size', 'link-58');">size</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt id="link-127" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-127', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt id="link-128" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-128', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-129" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-129', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"bp|aa"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt id="link-130" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-130', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt id="link-131" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-131', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-132', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-133" class="py-name"><a title="Bio.GenBank._FeatureConsumer.residue_type
Bio.GenBank._RecordConsumer.residue_type
Bio.expressions.genbank.residue_type" class="py-name" href="#" onclick="return doclink('link-133', 'residue_type', 'link-77');">residue_type</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt id="link-134" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-134', 'blank_space', 'link-8');">blank_space</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt id="link-135" class="py-name"><a title="Bio.GenBank._FeatureConsumer.data_file_division
Bio.GenBank._RecordConsumer.data_file_division
Bio.expressions.genbank.data_file_division" class="py-name" href="#" onclick="return doclink('link-135', 'data_file_division', 'link-112');">data_file_division</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt id="link-136" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-136', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt id="link-137" class="py-name"><a title="Bio.GenBank._FeatureConsumer.date
Bio.GenBank._RecordConsumer.date
Bio.Prosite._RecordConsumer.date
Bio.SwissProt.SProt._RecordConsumer.date
Bio.SwissProt.SProt._SequenceConsumer.date
Bio.expressions.embl.embl65.date
Bio.expressions.genbank.date" class="py-name" href="#" onclick="return doclink('link-137', 'date', 'link-101');">date</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt id="link-138" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-138', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-139" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-139', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt class="py-comment"># definition line</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># DEFINITION Genomic sequence for Arabidopsis thaliana BAC T25K16 from</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># chromosome I, complete sequence.</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-140" class="py-name" targets="Variable Bio.expressions.genbank.definition_block=Bio.expressions.genbank-module.html#definition_block"><a title="Bio.expressions.genbank.definition_block" class="py-name" href="#" onclick="return doclink('link-140', 'definition_block', 'link-140');">definition_block</a></tt> <tt class="py-op">=</tt> <tt id="link-141" class="py-name" targets="Function Bio.expressions.genbank.define_block()=Bio.expressions.genbank-module.html#define_block"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-141', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">"DEFINITION"</tt><tt class="py-op">,</tt> <tt class="py-string">"definition_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-string">"definition"</tt><tt class="py-op">,</tt> <tt id="link-142" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-142', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-143" class="py-name" targets="Variable Bio.CDD.cdd_format.description_block=Bio.CDD.cdd_format-module.html#description_block,Function Bio.Std.description_block()=Bio.Std-module.html#description_block"><a title="Bio.CDD.cdd_format.description_block
Bio.Std.description_block" class="py-name" href="#" onclick="return doclink('link-143', 'description_block', 'link-143');">description_block</a></tt><tt class="py-op">,</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt id="link-144" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-144', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-145" class="py-name" targets="Method Bio.Blast.NCBIStandalone._DescriptionConsumer.description()=Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description,Method Bio.Enzyme._RecordConsumer.description()=Bio.Enzyme._RecordConsumer-class.html#description,Method Bio.Prosite._RecordConsumer.description()=Bio.Prosite._RecordConsumer-class.html#description,Function Bio.Std.description()=Bio.Std-module.html#description,Method Bio.SwissProt.SProt._RecordConsumer.description()=Bio.SwissProt.SProt._RecordConsumer-class.html#description,Method Bio.SwissProt.SProt._SequenceConsumer.description()=Bio.SwissProt.SProt._SequenceConsumer-class.html#description,Variable Martel.setup.run_local_tests.description=Martel.setup.run_local_tests-class.html#description"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-145', 'description', 'link-145');">description</a></tt><tt class="py-op">)</tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt class="py-comment"># accession line</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># ACCESSION AC007323</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># or</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># ACCESSION NC_004353 REGION: 1..1281640</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-146" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.accession()=Bio.GenBank._FeatureConsumer-class.html#accession,Method Bio.GenBank._RecordConsumer.accession()=Bio.GenBank._RecordConsumer-class.html#accession,Method Bio.Prosite.Prodoc._RecordConsumer.accession()=Bio.Prosite.Prodoc._RecordConsumer-class.html#accession,Method Bio.Prosite._RecordConsumer.accession()=Bio.Prosite._RecordConsumer-class.html#accession,Method Bio.SwissProt.SProt._RecordConsumer.accession()=Bio.SwissProt.SProt._RecordConsumer-class.html#accession,Method Bio.SwissProt.SProt._SequenceConsumer.accession()=Bio.SwissProt.SProt._SequenceConsumer-class.html#accession,Variable Bio.expressions.embl.embl65.accession=Bio.expressions.embl.embl65-module.html#accession,Variable Bio.expressions.genbank.accession=Bio.expressions.genbank-module.html#accession"><a title="Bio.GenBank._FeatureConsumer.accession
Bio.GenBank._RecordConsumer.accession
Bio.Prosite.Prodoc._RecordConsumer.accession
Bio.Prosite._RecordConsumer.accession
Bio.SwissProt.SProt._RecordConsumer.accession
Bio.SwissProt.SProt._SequenceConsumer.accession
Bio.expressions.embl.embl65.accession
Bio.expressions.genbank.accession" class="py-name" href="#" onclick="return doclink('link-146', 'accession', 'link-146');">accession</a></tt> <tt class="py-op">=</tt> <tt id="link-147" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-147', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-148" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-148', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"accession"</tt><tt class="py-op">,</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt id="link-149" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-149', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-150" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-150', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"><tt id="link-151" class="py-name" targets="Variable Bio.expressions.genbank.region=Bio.expressions.genbank-module.html#region"><a title="Bio.expressions.genbank.region" class="py-name" href="#" onclick="return doclink('link-151', 'region', 'link-151');">region</a></tt> <tt class="py-op">=</tt> <tt id="link-152" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-152', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-153', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"region"</tt><tt class="py-op">,</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt id="link-154" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-154', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-155', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+..[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"><tt id="link-156" class="py-name" targets="Variable Bio.expressions.genbank.accession_block=Bio.expressions.genbank-module.html#accession_block"><a title="Bio.expressions.genbank.accession_block" class="py-name" href="#" onclick="return doclink('link-156', 'accession_block', 'link-156');">accession_block</a></tt> <tt class="py-op">=</tt> <tt id="link-157" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-157', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-158" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-158', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"accession_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt id="link-159" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-159', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-160" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-160', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"ACCESSION"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt id="link-161" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-161', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-162', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-163" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-163', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt id="link-164" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-164', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-165', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-166" class="py-name"><a title="Bio.GenBank._FeatureConsumer.accession
Bio.GenBank._RecordConsumer.accession
Bio.Prosite.Prodoc._RecordConsumer.accession
Bio.Prosite._RecordConsumer.accession
Bio.SwissProt.SProt._RecordConsumer.accession
Bio.SwissProt.SProt._SequenceConsumer.accession
Bio.expressions.embl.embl65.accession
Bio.expressions.genbank.accession" class="py-name" href="#" onclick="return doclink('link-166', 'accession', 'link-146');">accession</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt id="link-167" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-167', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-168', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt id="link-169" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-169', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-170', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-171" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-171', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-172', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt id="link-173" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-173', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-174', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"REGION:"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt id="link-175" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-175', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-176', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-177" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-177', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-178', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt id="link-179" class="py-name"><a title="Bio.expressions.genbank.region" class="py-name" href="#" onclick="return doclink('link-179', 'region', 'link-151');">region</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt id="link-180" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-180', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-181" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-181', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-182" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-182', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-183" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-183', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt id="link-184" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-184', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-185', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"><tt class="py-comment"># accession_block = define_block("ACCESSION", "accession_block", "accession")</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"><tt class="py-comment"># NID g44010</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-186" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.nid()=Bio.GenBank._FeatureConsumer-class.html#nid,Method Bio.GenBank._RecordConsumer.nid()=Bio.GenBank._RecordConsumer-class.html#nid,Variable Bio.expressions.genbank.nid=Bio.expressions.genbank-module.html#nid"><a title="Bio.GenBank._FeatureConsumer.nid
Bio.GenBank._RecordConsumer.nid
Bio.expressions.genbank.nid" class="py-name" href="#" onclick="return doclink('link-186', 'nid', 'link-186');">nid</a></tt> <tt class="py-op">=</tt> <tt id="link-187" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-187', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-188', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"nid"</tt><tt class="py-op">,</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt id="link-189" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-189', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-190" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-190', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"><tt id="link-191" class="py-name" targets="Variable Bio.expressions.genbank.nid_line=Bio.expressions.genbank-module.html#nid_line"><a title="Bio.expressions.genbank.nid_line" class="py-name" href="#" onclick="return doclink('link-191', 'nid_line', 'link-191');">nid_line</a></tt> <tt class="py-op">=</tt> <tt id="link-192" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-192', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-193', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"nid_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt id="link-194" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-194', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-195', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"NID"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt id="link-196" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-196', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt id="link-197" class="py-name"><a title="Bio.GenBank._FeatureConsumer.nid
Bio.GenBank._RecordConsumer.nid
Bio.expressions.genbank.nid" class="py-name" href="#" onclick="return doclink('link-197', 'nid', 'link-186');">nid</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt id="link-198" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-198', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-199', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"><tt class="py-comment"># PID g6754304</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-200" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.pid()=Bio.GenBank._FeatureConsumer-class.html#pid,Method Bio.GenBank._RecordConsumer.pid()=Bio.GenBank._RecordConsumer-class.html#pid,Variable Bio.expressions.genbank.pid=Bio.expressions.genbank-module.html#pid"><a title="Bio.GenBank._FeatureConsumer.pid
Bio.GenBank._RecordConsumer.pid
Bio.expressions.genbank.pid" class="py-name" href="#" onclick="return doclink('link-200', 'pid', 'link-200');">pid</a></tt> <tt class="py-op">=</tt> <tt id="link-201" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-201', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-202" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-202', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"pid"</tt><tt class="py-op">,</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt id="link-203" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-203', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-204', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"><tt id="link-205" class="py-name" targets="Variable Bio.expressions.genbank.pid_line=Bio.expressions.genbank-module.html#pid_line"><a title="Bio.expressions.genbank.pid_line" class="py-name" href="#" onclick="return doclink('link-205', 'pid_line', 'link-205');">pid_line</a></tt> <tt class="py-op">=</tt> <tt id="link-206" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-206', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-207" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-207', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"pid_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt id="link-208" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-208', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-209', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"PID"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt id="link-210" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-210', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt id="link-211" class="py-name"><a title="Bio.GenBank._FeatureConsumer.pid
Bio.GenBank._RecordConsumer.pid
Bio.expressions.genbank.pid" class="py-name" href="#" onclick="return doclink('link-211', 'pid', 'link-200');">pid</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt id="link-212" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-212', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-213" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-213', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"><tt class="py-comment"># version and GI line</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># VERSION AC007323.5 GI:6587720</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-214" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.version()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#version,Method Bio.Blast.NCBIStandalone._HeaderConsumer.version()=Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version,Method Bio.GenBank._FeatureConsumer.version()=Bio.GenBank._FeatureConsumer-class.html#version,Method Bio.GenBank._RecordConsumer.version()=Bio.GenBank._RecordConsumer-class.html#version,Variable Bio.MetaTool.metatool_format.version=Bio.MetaTool.metatool_format-module.html#version,Variable Bio.expressions.genbank.version=Bio.expressions.genbank-module.html#version"><a title="Bio.AlignAce.Parser.AlignAceConsumer.version
Bio.Blast.NCBIStandalone._HeaderConsumer.version
Bio.GenBank._FeatureConsumer.version
Bio.GenBank._RecordConsumer.version
Bio.MetaTool.metatool_format.version
Bio.expressions.genbank.version" class="py-name" href="#" onclick="return doclink('link-214', 'version', 'link-214');">version</a></tt> <tt class="py-op">=</tt> <tt id="link-215" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-215', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-216" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-216', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"version"</tt><tt class="py-op">,</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt id="link-217" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-217', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-218" class="py-name" targets="Function Bio.Std.dbid()=Bio.Std-module.html#dbid"><a title="Bio.Std.dbid" class="py-name" href="#" onclick="return doclink('link-218', 'dbid', 'link-218');">dbid</a></tt><tt class="py-op">(</tt><tt id="link-219" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-219', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-220" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-220', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w\d\.]+"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt> <tt class="py-op">:</tt> <tt class="py-string">"primary"</tt><tt class="py-op">,</tt> <tt class="py-string">"dbname"</tt> <tt class="py-op">:</tt> <tt class="py-string">"genbank"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"><tt id="link-221" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.gi()=Bio.GenBank._FeatureConsumer-class.html#gi,Method Bio.GenBank._RecordConsumer.gi()=Bio.GenBank._RecordConsumer-class.html#gi,Variable Bio.expressions.genbank.gi=Bio.expressions.genbank-module.html#gi"><a title="Bio.GenBank._FeatureConsumer.gi
Bio.GenBank._RecordConsumer.gi
Bio.expressions.genbank.gi" class="py-name" href="#" onclick="return doclink('link-221', 'gi', 'link-221');">gi</a></tt> <tt class="py-op">=</tt> <tt id="link-222" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-222', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-223" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-223', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"gi"</tt><tt class="py-op">,</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt id="link-224" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-224', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-225" class="py-name"><a title="Bio.Std.dbid" class="py-name" href="#" onclick="return doclink('link-225', 'dbid', 'link-218');">dbid</a></tt><tt class="py-op">(</tt><tt id="link-226" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-226', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-227', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"type"</tt> <tt class="py-op">:</tt> <tt class="py-string">"secondary"</tt><tt class="py-op">,</tt> <tt class="py-string">"dbname"</tt> <tt class="py-op">:</tt> <tt class="py-string">"genbank"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt id="link-228" class="py-name" targets="Variable Bio.expressions.genbank.version_line=Bio.expressions.genbank-module.html#version_line"><a title="Bio.expressions.genbank.version_line" class="py-name" href="#" onclick="return doclink('link-228', 'version_line', 'link-228');">version_line</a></tt> <tt class="py-op">=</tt> <tt id="link-229" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-229', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-230', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"version_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt id="link-231" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-231', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-232', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"VERSION"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt id="link-233" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-233', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt id="link-234" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.version
Bio.Blast.NCBIStandalone._HeaderConsumer.version
Bio.GenBank._FeatureConsumer.version
Bio.GenBank._RecordConsumer.version
Bio.MetaTool.metatool_format.version
Bio.expressions.genbank.version" class="py-name" href="#" onclick="return doclink('link-234', 'version', 'link-214');">version</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt id="link-235" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-235', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-236" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-236', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-237" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-237', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt id="link-238" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-238', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-239" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-239', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"GI:"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt id="link-240" class="py-name"><a title="Bio.GenBank._FeatureConsumer.gi
Bio.GenBank._RecordConsumer.gi
Bio.expressions.genbank.gi" class="py-name" href="#" onclick="return doclink('link-240', 'gi', 'link-221');">gi</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt id="link-241" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-241', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-242', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"><tt class="py-comment"># DBSOURCE REFSEQ: accession NM_010510.1</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-243" class="py-name" targets="Variable Bio.expressions.genbank.db_source_block=Bio.expressions.genbank-module.html#db_source_block"><a title="Bio.expressions.genbank.db_source_block" class="py-name" href="#" onclick="return doclink('link-243', 'db_source_block', 'link-243');">db_source_block</a></tt> <tt class="py-op">=</tt> <tt id="link-244" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-244', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">"DBSOURCE"</tt><tt class="py-op">,</tt> <tt class="py-string">"db_source_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"db_source"</tt><tt class="py-op">)</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"><tt class="py-comment"># keywords line</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># KEYWORDS antifreeze protein homology; cold-regulated gene; cor6.6 gene;</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># KIN1 homology.</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-245" class="py-name" targets="Variable Bio.expressions.genbank.keywords_block=Bio.expressions.genbank-module.html#keywords_block"><a title="Bio.expressions.genbank.keywords_block" class="py-name" href="#" onclick="return doclink('link-245', 'keywords_block', 'link-245');">keywords_block</a></tt> <tt class="py-op">=</tt> <tt id="link-246" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-246', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">"KEYWORDS"</tt><tt class="py-op">,</tt> <tt class="py-string">"keywords_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"keywords"</tt><tt class="py-op">)</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"><tt class="py-comment"># SEGMENT 1 of 6</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-247" class="py-name" targets="Method Bio.GFF.Connection.segment()=Bio.GFF.Connection-class.html#segment,Method Bio.GenBank._FeatureConsumer.segment()=Bio.GenBank._FeatureConsumer-class.html#segment,Method Bio.GenBank._RecordConsumer.segment()=Bio.GenBank._RecordConsumer-class.html#segment,Variable Bio.expressions.blocks.segment=Bio.expressions.blocks-module.html#segment,Variable Bio.expressions.genbank.segment=Bio.expressions.genbank-module.html#segment"><a title="Bio.GFF.Connection.segment
Bio.GenBank._FeatureConsumer.segment
Bio.GenBank._RecordConsumer.segment
Bio.expressions.blocks.segment
Bio.expressions.genbank.segment" class="py-name" href="#" onclick="return doclink('link-247', 'segment', 'link-247');">segment</a></tt> <tt class="py-op">=</tt> <tt id="link-248" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-248', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-249', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"segment"</tt><tt class="py-op">,</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt id="link-250" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-250', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-251" class="py-name"><a title="Bio.Decode.Integer
Bio.GenBank.LocationParser.Integer
Martel.Integer" class="py-name" href="#" onclick="return doclink('link-251', 'Integer', 'link-64');">Integer</a></tt><tt class="py-op">(</tt><tt class="py-string">"segment_num"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt id="link-252" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-252', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-253" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-253', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" of "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt id="link-254" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-254', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-255" class="py-name"><a title="Bio.Decode.Integer
Bio.GenBank.LocationParser.Integer
Martel.Integer" class="py-name" href="#" onclick="return doclink('link-255', 'Integer', 'link-64');">Integer</a></tt><tt class="py-op">(</tt><tt class="py-string">"segment_total"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"><tt id="link-256" class="py-name" targets="Variable Bio.expressions.genbank.segment_line=Bio.expressions.genbank-module.html#segment_line"><a title="Bio.expressions.genbank.segment_line" class="py-name" href="#" onclick="return doclink('link-256', 'segment_line', 'link-256');">segment_line</a></tt> <tt class="py-op">=</tt> <tt id="link-257" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-257', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-258', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"segment_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt id="link-259" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-259', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-260" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-260', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"SEGMENT "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-261" class="py-name"><a title="Bio.GFF.Connection.segment
Bio.GenBank._FeatureConsumer.segment
Bio.GenBank._RecordConsumer.segment
Bio.expressions.blocks.segment
Bio.expressions.genbank.segment" class="py-name" href="#" onclick="return doclink('link-261', 'segment', 'link-247');">segment</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt id="link-262" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-262', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-263" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-263', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"><tt class="py-comment"># SOURCE thale cress.</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-264" class="py-name" targets="Variable Bio.CDD.cdd_format.source_block=Bio.CDD.cdd_format-module.html#source_block,Variable Bio.expressions.genbank.source_block=Bio.expressions.genbank-module.html#source_block"><a title="Bio.CDD.cdd_format.source_block
Bio.expressions.genbank.source_block" class="py-name" href="#" onclick="return doclink('link-264', 'source_block', 'link-264');">source_block</a></tt> <tt class="py-op">=</tt> <tt id="link-265" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-265', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">"SOURCE"</tt><tt class="py-op">,</tt> <tt class="py-string">"source_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"source"</tt><tt class="py-op">)</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"><tt class="py-comment"># ORGANISM Arabidopsis thaliana</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Eukaryota; Viridiplantae; Embryophyta; Tracheophyta; Spermatophyta;</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Magnoliophyta; eudicotyledons; core eudicots; Rosidae; eurosids II;</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Brassicales; Brassicaceae; Arabidopsis.</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-266" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.organism()=Bio.GenBank._FeatureConsumer-class.html#organism,Method Bio.GenBank._RecordConsumer.organism()=Bio.GenBank._RecordConsumer-class.html#organism,Variable Bio.expressions.embl.embl65.organism=Bio.expressions.embl.embl65-module.html#organism,Variable Bio.expressions.genbank.organism=Bio.expressions.genbank-module.html#organism"><a title="Bio.GenBank._FeatureConsumer.organism
Bio.GenBank._RecordConsumer.organism
Bio.expressions.embl.embl65.organism
Bio.expressions.genbank.organism" class="py-name" href="#" onclick="return doclink('link-266', 'organism', 'link-266');">organism</a></tt> <tt class="py-op">=</tt> <tt id="link-267" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-267', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-268" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-268', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"organism"</tt><tt class="py-op">,</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt id="link-269" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-269', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-270" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-270', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"><tt id="link-271" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.taxonomy()=Bio.GenBank._FeatureConsumer-class.html#taxonomy,Method Bio.GenBank._RecordConsumer.taxonomy()=Bio.GenBank._RecordConsumer-class.html#taxonomy,Variable Bio.expressions.genbank.taxonomy=Bio.expressions.genbank-module.html#taxonomy"><a title="Bio.GenBank._FeatureConsumer.taxonomy
Bio.GenBank._RecordConsumer.taxonomy
Bio.expressions.genbank.taxonomy" class="py-name" href="#" onclick="return doclink('link-271', 'taxonomy', 'link-271');">taxonomy</a></tt> <tt class="py-op">=</tt> <tt id="link-272" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-272', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-273" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-273', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"taxonomy"</tt><tt class="py-op">,</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt id="link-274" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-274', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-275" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-275', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-276" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-276', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt id="link-277" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-277', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-278', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"><tt id="link-279" class="py-name" targets="Variable Bio.expressions.genbank.organism_block=Bio.expressions.genbank-module.html#organism_block"><a title="Bio.expressions.genbank.organism_block" class="py-name" href="#" onclick="return doclink('link-279', 'organism_block', 'link-279');">organism_block</a></tt> <tt class="py-op">=</tt> <tt id="link-280" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-280', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-281" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-281', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"organism_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt id="link-282" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-282', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-283" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-283', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" ORGANISM"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt id="link-284" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-284', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt id="link-285" class="py-name"><a title="Bio.GenBank._FeatureConsumer.organism
Bio.GenBank._RecordConsumer.organism
Bio.expressions.embl.embl65.organism
Bio.expressions.genbank.organism" class="py-name" href="#" onclick="return doclink('link-285', 'organism', 'link-266');">organism</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt id="link-286" class="py-name"><a title="Bio.GenBank._FeatureConsumer.taxonomy
Bio.GenBank._RecordConsumer.taxonomy
Bio.expressions.genbank.taxonomy" class="py-name" href="#" onclick="return doclink('link-286', 'taxonomy', 'link-271');">taxonomy</a></tt><tt class="py-op">)</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"><tt class="py-comment"># REFERENCE 1 (bases 1 to 86436)</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># AUTHORS Thomashow,M.F.</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># TITLE Direct Submission</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># JOURNAL Submitted (01-FEB-1991) M.F. Thomashow, Dept. Crop and Soil</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Sciences, Dept. Microbiology, Michigan State University, East</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Lansing, Michigan 48824, USA</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-287" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.reference_num()=Bio.GenBank._FeatureConsumer-class.html#reference_num,Method Bio.GenBank._RecordConsumer.reference_num()=Bio.GenBank._RecordConsumer-class.html#reference_num,Variable Bio.expressions.genbank.reference_num=Bio.expressions.genbank-module.html#reference_num"><a title="Bio.GenBank._FeatureConsumer.reference_num
Bio.GenBank._RecordConsumer.reference_num
Bio.expressions.genbank.reference_num" class="py-name" href="#" onclick="return doclink('link-287', 'reference_num', 'link-287');">reference_num</a></tt> <tt class="py-op">=</tt> <tt id="link-288" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-288', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-289" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-289', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference_num"</tt><tt class="py-op">,</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt id="link-290" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-290', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-291" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-291', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"><tt class="py-comment"># can have normal references, like that shown above, or references like:</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># REFERENCE 1 (sites)</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># with no base information or even:</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># REFERENCE 2 (bases 1 to 105654; 110423 to 111122)</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-292" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.reference_bases()=Bio.GenBank._FeatureConsumer-class.html#reference_bases,Method Bio.GenBank._RecordConsumer.reference_bases()=Bio.GenBank._RecordConsumer-class.html#reference_bases,Variable Bio.expressions.genbank.reference_bases=Bio.expressions.genbank-module.html#reference_bases"><a title="Bio.GenBank._FeatureConsumer.reference_bases
Bio.GenBank._RecordConsumer.reference_bases
Bio.expressions.genbank.reference_bases" class="py-name" href="#" onclick="return doclink('link-292', 'reference_bases', 'link-292');">reference_bases</a></tt> <tt class="py-op">=</tt> <tt id="link-293" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-293', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-294" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-294', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference_bases"</tt><tt class="py-op">,</tt> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt id="link-295" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-295', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-296" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-296', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"("</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt id="link-297" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-297', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-298" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-298', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[;\w\d \R]+"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt id="link-299" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-299', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-300" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-300', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">")"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"><tt id="link-301" class="py-name" targets="Variable Bio.expressions.genbank.reference_line=Bio.expressions.genbank-module.html#reference_line"><a title="Bio.expressions.genbank.reference_line" class="py-name" href="#" onclick="return doclink('link-301', 'reference_line', 'link-301');">reference_line</a></tt> <tt class="py-op">=</tt> <tt id="link-302" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-302', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-303" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-303', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt id="link-304" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-304', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-305" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-305', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"REFERENCE"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt id="link-306" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-306', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt id="link-307" class="py-name"><a title="Bio.GenBank._FeatureConsumer.reference_num
Bio.GenBank._RecordConsumer.reference_num
Bio.expressions.genbank.reference_num" class="py-name" href="#" onclick="return doclink('link-307', 'reference_num', 'link-287');">reference_num</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt id="link-308" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-308', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-309" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-309', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-310" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-310', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt id="link-311" class="py-name"><a title="Bio.GenBank._FeatureConsumer.reference_bases
Bio.GenBank._RecordConsumer.reference_bases
Bio.expressions.genbank.reference_bases" class="py-name" href="#" onclick="return doclink('link-311', 'reference_bases', 'link-292');">reference_bases</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt id="link-312" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-312', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-313" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-313', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"><tt id="link-314" class="py-name" targets="Variable Bio.expressions.genbank.authors_block=Bio.expressions.genbank-module.html#authors_block"><a title="Bio.expressions.genbank.authors_block" class="py-name" href="#" onclick="return doclink('link-314', 'authors_block', 'link-314');">authors_block</a></tt> <tt class="py-op">=</tt> <tt id="link-315" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-315', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">" AUTHORS"</tt><tt class="py-op">,</tt> <tt class="py-string">"authors_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"authors"</tt><tt class="py-op">)</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"><tt id="link-316" class="py-name" targets="Variable Bio.expressions.genbank.consrtm_block=Bio.expressions.genbank-module.html#consrtm_block"><a title="Bio.expressions.genbank.consrtm_block" class="py-name" href="#" onclick="return doclink('link-316', 'consrtm_block', 'link-316');">consrtm_block</a></tt> <tt class="py-op">=</tt> <tt id="link-317" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-317', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">" CONSRTM"</tt><tt class="py-op">,</tt> <tt class="py-string">"consrtm_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"consrtm"</tt><tt class="py-op">)</tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"><tt id="link-318" class="py-name" targets="Variable Bio.expressions.genbank.title_block=Bio.expressions.genbank-module.html#title_block"><a title="Bio.expressions.genbank.title_block" class="py-name" href="#" onclick="return doclink('link-318', 'title_block', 'link-318');">title_block</a></tt> <tt class="py-op">=</tt> <tt id="link-319" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-319', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">" TITLE"</tt><tt class="py-op">,</tt> <tt class="py-string">"title_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"title"</tt><tt class="py-op">)</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"><tt id="link-320" class="py-name" targets="Variable Bio.expressions.genbank.journal_block=Bio.expressions.genbank-module.html#journal_block"><a title="Bio.expressions.genbank.journal_block" class="py-name" href="#" onclick="return doclink('link-320', 'journal_block', 'link-320');">journal_block</a></tt> <tt class="py-op">=</tt> <tt id="link-321" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-321', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">" JOURNAL"</tt><tt class="py-op">,</tt> <tt class="py-string">"journal_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"journal"</tt><tt class="py-op">)</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"><tt class="py-comment"># MEDLINE 92119220</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-322" class="py-name" targets="Variable Bio.expressions.genbank.medline_line=Bio.expressions.genbank-module.html#medline_line"><a title="Bio.expressions.genbank.medline_line" class="py-name" href="#" onclick="return doclink('link-322', 'medline_line', 'link-322');">medline_line</a></tt> <tt class="py-op">=</tt> <tt id="link-323" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-323', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-324" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-324', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"medline_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt id="link-325" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-325', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-326" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-326', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" MEDLINE "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt id="link-327" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-327', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-328" class="py-name"><a title="Bio.Decode.Integer
Bio.GenBank.LocationParser.Integer
Martel.Integer" class="py-name" href="#" onclick="return doclink('link-328', 'Integer', 'link-64');">Integer</a></tt><tt class="py-op">(</tt><tt class="py-string">"medline_id"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt id="link-329" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-329', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-330" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-330', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"><tt class="py-comment"># PUBMED 10617197</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-331" class="py-name" targets="Variable Bio.expressions.genbank.pubmed_line=Bio.expressions.genbank-module.html#pubmed_line"><a title="Bio.expressions.genbank.pubmed_line" class="py-name" href="#" onclick="return doclink('link-331', 'pubmed_line', 'link-331');">pubmed_line</a></tt> <tt class="py-op">=</tt> <tt id="link-332" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-332', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-333" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-333', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"pubmed_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt id="link-334" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-334', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-335" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-335', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" PUBMED "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt id="link-336" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-336', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-337" class="py-name"><a title="Bio.Decode.Integer
Bio.GenBank.LocationParser.Integer
Martel.Integer" class="py-name" href="#" onclick="return doclink('link-337', 'Integer', 'link-64');">Integer</a></tt><tt class="py-op">(</tt><tt class="py-string">"pubmed_id"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt id="link-338" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-338', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-339" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-339', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"><tt class="py-comment"># REMARK This sequence is of BAC F10O3 from Arabidopsis thaliana chromosome</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-340" class="py-name" targets="Variable Bio.expressions.genbank.remark_block=Bio.expressions.genbank-module.html#remark_block"><a title="Bio.expressions.genbank.remark_block" class="py-name" href="#" onclick="return doclink('link-340', 'remark_block', 'link-340');">remark_block</a></tt> <tt class="py-op">=</tt> <tt id="link-341" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-341', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">" REMARK"</tt><tt class="py-op">,</tt> <tt class="py-string">"remark_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"remark"</tt><tt class="py-op">)</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"><tt class="py-comment"># an entire reference for the sequence</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-342" class="py-name" targets="Method Bio.Blast.NCBIStandalone._HeaderConsumer.reference()=Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference,Method Bio.Prosite.Prodoc._RecordConsumer.reference()=Bio.Prosite.Prodoc._RecordConsumer-class.html#reference,Variable Bio.expressions.embl.embl65.reference=Bio.expressions.embl.embl65-module.html#reference,Variable Bio.expressions.genbank.reference=Bio.expressions.genbank-module.html#reference,Variable Bio.expressions.swissprot.sprot38.reference=Bio.expressions.swissprot.sprot38-module.html#reference,Variable Martel.test.test_swissprot38.reference=Martel.test.test_swissprot38-module.html#reference,Variable Martel.test.testformats.swissprot38.reference=Martel.test.testformats.swissprot38-module.html#reference"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-342', 'reference', 'link-342');">reference</a></tt> <tt class="py-op">=</tt> <tt id="link-343" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-343', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-344" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-344', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reference"</tt><tt class="py-op">,</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt id="link-345" class="py-name"><a title="Bio.expressions.genbank.reference_line" class="py-name" href="#" onclick="return doclink('link-345', 'reference_line', 'link-301');">reference_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt id="link-346" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-346', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-347" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-347', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-348" class="py-name"><a title="Bio.expressions.genbank.authors_block" class="py-name" href="#" onclick="return doclink('link-348', 'authors_block', 'link-314');">authors_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt id="link-349" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-349', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-350" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-350', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-351" class="py-name"><a title="Bio.expressions.genbank.consrtm_block" class="py-name" href="#" onclick="return doclink('link-351', 'consrtm_block', 'link-316');">consrtm_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt id="link-352" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-352', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-353" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-353', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-354" class="py-name"><a title="Bio.expressions.genbank.title_block" class="py-name" href="#" onclick="return doclink('link-354', 'title_block', 'link-318');">title_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt id="link-355" class="py-name"><a title="Bio.expressions.genbank.journal_block" class="py-name" href="#" onclick="return doclink('link-355', 'journal_block', 'link-320');">journal_block</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt id="link-356" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-356', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-357" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-357', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-358" class="py-name"><a title="Bio.expressions.genbank.medline_line" class="py-name" href="#" onclick="return doclink('link-358', 'medline_line', 'link-322');">medline_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt id="link-359" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-359', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-360" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-360', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-361" class="py-name"><a title="Bio.expressions.genbank.pubmed_line" class="py-name" href="#" onclick="return doclink('link-361', 'pubmed_line', 'link-331');">pubmed_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt id="link-362" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-362', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-363" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-363', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-364" class="py-name"><a title="Bio.expressions.genbank.remark_block" class="py-name" href="#" onclick="return doclink('link-364', 'remark_block', 'link-340');">remark_block</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"><tt class="py-comment"># COMMENT On Dec 16, 1999 this sequence version replaced gi:5729683.</tt> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-365" class="py-name" targets="Variable Bio.expressions.genbank.comment_block=Bio.expressions.genbank-module.html#comment_block"><a title="Bio.expressions.genbank.comment_block" class="py-name" href="#" onclick="return doclink('link-365', 'comment_block', 'link-365');">comment_block</a></tt> <tt class="py-op">=</tt> <tt id="link-366" class="py-name"><a title="Bio.expressions.genbank.define_block" class="py-name" href="#" onclick="return doclink('link-366', 'define_block', 'link-141');">define_block</a></tt><tt class="py-op">(</tt><tt class="py-string">"COMMENT"</tt><tt class="py-op">,</tt> <tt class="py-string">"comment_block"</tt><tt class="py-op">,</tt> <tt class="py-string">"comment"</tt><tt class="py-op">)</tt> </tt>
<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"><tt class="py-comment"># PRIMARY</tt> </tt>
<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-367" class="py-name" targets="Variable Bio.expressions.genbank.primary_line=Bio.expressions.genbank-module.html#primary_line"><a title="Bio.expressions.genbank.primary_line" class="py-name" href="#" onclick="return doclink('link-367', 'primary_line', 'link-367');">primary_line</a></tt> <tt class="py-op">=</tt> <tt id="link-368" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-368', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-369" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-369', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primary_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt id="link-370" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-370', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-371" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-371', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"PRIMARY"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt id="link-372" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-372', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt id="link-373" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-373', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-374" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-374', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"TPA_SPAN"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt id="link-375" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-375', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt id="link-376" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-376', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-377" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-377', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"PRIMARY_IDENTIFIER"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt id="link-378" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-378', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt id="link-379" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-379', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-380" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-380', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"PRIMARY_SPAN"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt id="link-381" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-381', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt id="link-382" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-382', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-383" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-383', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"COMP"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt id="link-384" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-384', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-385" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-385', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"><tt id="link-386" class="py-name" targets="Method Bio.GenBank._RecordConsumer.primary_ref_line()=Bio.GenBank._RecordConsumer-class.html#primary_ref_line,Variable Bio.expressions.genbank.primary_ref_line=Bio.expressions.genbank-module.html#primary_ref_line"><a title="Bio.GenBank._RecordConsumer.primary_ref_line
Bio.expressions.genbank.primary_ref_line" class="py-name" href="#" onclick="return doclink('link-386', 'primary_ref_line', 'link-386');">primary_ref_line</a></tt> <tt class="py-op">=</tt><tt id="link-387" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-387', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-388" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-388', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primary_ref_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt id="link-389" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-389', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt id="link-390" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-390', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-391" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-391', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r"\d+\-\d+"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt id="link-392" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-392', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt id="link-393" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-393', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-394" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-394', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\S]+"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt id="link-395" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-395', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt id="link-396" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-396', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-397" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-397', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"\d+\-\d+"</tt><tt class="py-op">)</tt><tt class="py-op">+</tt> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt id="link-398" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-398', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-399" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-399', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-400" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-400', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> <tt id="link-401" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-401', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-402" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-402', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"c"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">+</tt> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt id="link-403" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-403', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-404" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-404', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"><tt id="link-405" class="py-name" targets="Method Bio.GenBank._RecordConsumer.primary()=Bio.GenBank._RecordConsumer-class.html#primary,Variable Bio.expressions.genbank.primary=Bio.expressions.genbank-module.html#primary"><a title="Bio.GenBank._RecordConsumer.primary
Bio.expressions.genbank.primary" class="py-name" href="#" onclick="return doclink('link-405', 'primary', 'link-405');">primary</a></tt> <tt class="py-op">=</tt> <tt id="link-406" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-406', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-407" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-407', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primary"</tt><tt class="py-op">,</tt><tt id="link-408" class="py-name"><a title="Bio.expressions.genbank.primary_line" class="py-name" href="#" onclick="return doclink('link-408', 'primary_line', 'link-367');">primary_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt id="link-409" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-409', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-410" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-410', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-411" class="py-name"><a title="Bio.GenBank._RecordConsumer.primary_ref_line
Bio.expressions.genbank.primary_ref_line" class="py-name" href="#" onclick="return doclink('link-411', 'primary_ref_line', 'link-386');">primary_ref_line</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"><tt class="py-comment"># start on the feature table. Eeek -- This is the part I was afraid of</tt> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># most!</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"><tt class="py-comment"># the header, so that we know we are heading into some features</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># FEATURES Location/Qualifiers</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-412" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.features_line()=Bio.GenBank._FeatureConsumer-class.html#features_line,Method Bio.GenBank._RecordConsumer.features_line()=Bio.GenBank._RecordConsumer-class.html#features_line,Variable Bio.expressions.genbank.features_line=Bio.expressions.genbank-module.html#features_line"><a title="Bio.GenBank._FeatureConsumer.features_line
Bio.GenBank._RecordConsumer.features_line
Bio.expressions.genbank.features_line" class="py-name" href="#" onclick="return doclink('link-412', 'features_line', 'link-412');">features_line</a></tt> <tt class="py-op">=</tt> <tt id="link-413" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-413', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-414" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-414', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"features_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt id="link-415" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-415', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-416" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-416', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"FEATURES"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt id="link-417" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-417', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt id="link-418" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-418', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-419" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-419', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"Location/Qualifiers"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt id="link-420" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-420', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-421" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-421', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"><tt class="py-comment"># feature key names are basically words, but sometimes have additional</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># characters ("-10_signal", "3'UTR"...)</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-422" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.feature_key()=Bio.GenBank._FeatureConsumer-class.html#feature_key,Method Bio.GenBank._RecordConsumer.feature_key()=Bio.GenBank._RecordConsumer-class.html#feature_key,Variable Bio.expressions.genbank.feature_key=Bio.expressions.genbank-module.html#feature_key"><a title="Bio.GenBank._FeatureConsumer.feature_key
Bio.GenBank._RecordConsumer.feature_key
Bio.expressions.genbank.feature_key" class="py-name" href="#" onclick="return doclink('link-422', 'feature_key', 'link-422');">feature_key</a></tt> <tt class="py-op">=</tt> <tt id="link-423" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-423', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-424" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-424', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_key"</tt><tt class="py-op">,</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt id="link-425" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-425', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-426" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-426', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w'-]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"><tt class="py-string">location = Martel.Group("location",</tt> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"><tt class="py-string"> Martel.ToEol("feature_location") + \</tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"><tt class="py-string"> Martel.Rep(qualifier_space + \</tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"><tt class="py-string"> Martel.Re("(?!/)") + \</tt> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"><tt class="py-string"> Martel.ToEol("feature_location")))</tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"><tt id="link-427" class="py-name" targets="Method Bio.GFF.Feature.location()=Bio.GFF.Feature-class.html#location,Method Bio.GFF.FeatureAggregate.location()=Bio.GFF.FeatureAggregate-class.html#location,Method Bio.GenBank._FeatureConsumer.location()=Bio.GenBank._FeatureConsumer-class.html#location,Method Bio.GenBank._RecordConsumer.location()=Bio.GenBank._RecordConsumer-class.html#location,Variable Bio.expressions.genbank.location=Bio.expressions.genbank-module.html#location"><a title="Bio.GFF.Feature.location
Bio.GFF.FeatureAggregate.location
Bio.GenBank._FeatureConsumer.location
Bio.GenBank._RecordConsumer.location
Bio.expressions.genbank.location" class="py-name" href="#" onclick="return doclink('link-427', 'location', 'link-427');">location</a></tt> <tt class="py-op">=</tt> <tt id="link-428" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-428', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-429" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-429', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"location"</tt><tt class="py-op">,</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> <tt id="link-430" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-430', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-431" class="py-name" targets="Function Bio.Std.feature_location()=Bio.Std-module.html#feature_location"><a title="Bio.Std.feature_location" class="py-name" href="#" onclick="return doclink('link-431', 'feature_location', 'link-431');">feature_location</a></tt><tt class="py-op">(</tt><tt id="link-432" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-432', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-433" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-433', 'UntilEol', 'link-35');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt id="link-434" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-434', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-435" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-435', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt id="link-436" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-436', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-437" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-437', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-438" class="py-name"><a title="Bio.expressions.genbank.qualifier_space" class="py-name" href="#" onclick="return doclink('link-438', 'qualifier_space', 'link-18');">qualifier_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt id="link-439" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-439', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-440" class="py-name" targets="Function Martel.AssertNot()=Martel-module.html#AssertNot"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-440', 'AssertNot', 'link-440');">AssertNot</a></tt><tt class="py-op">(</tt><tt id="link-441" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-441', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-442" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-442', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"/"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> <tt id="link-443" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-443', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-444" class="py-name"><a title="Bio.Std.feature_location" class="py-name" href="#" onclick="return doclink('link-444', 'feature_location', 'link-431');">feature_location</a></tt><tt class="py-op">(</tt><tt id="link-445" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-445', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-446" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-446', 'UntilEol', 'link-35');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt id="link-447" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-447', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-448" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-448', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"><tt id="link-449" class="py-name" targets="Variable Bio.expressions.genbank.feature_key_line=Bio.expressions.genbank-module.html#feature_key_line"><a title="Bio.expressions.genbank.feature_key_line" class="py-name" href="#" onclick="return doclink('link-449', 'feature_key_line', 'link-449');">feature_key_line</a></tt> <tt class="py-op">=</tt> <tt id="link-450" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-450', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-451" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-451', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_key_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt id="link-452" class="py-name"><a title="Bio.expressions.genbank.big_indent_space" class="py-name" href="#" onclick="return doclink('link-452', 'big_indent_space', 'link-14');">big_indent_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt id="link-453" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-453', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-454" class="py-name" targets="Function Bio.Std.feature_name()=Bio.Std-module.html#feature_name"><a title="Bio.Std.feature_name" class="py-name" href="#" onclick="return doclink('link-454', 'feature_name', 'link-454');">feature_name</a></tt><tt class="py-op">(</tt><tt id="link-455" class="py-name"><a title="Bio.GenBank._FeatureConsumer.feature_key
Bio.GenBank._RecordConsumer.feature_key
Bio.expressions.genbank.feature_key" class="py-name" href="#" onclick="return doclink('link-455', 'feature_key', 'link-422');">feature_key</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt id="link-456" class="py-name"><a title="Bio.GFF.Feature.location
Bio.GFF.FeatureAggregate.location
Bio.GenBank._FeatureConsumer.location
Bio.GenBank._RecordConsumer.location
Bio.expressions.genbank.location" class="py-name" href="#" onclick="return doclink('link-456', 'location', 'link-427');">location</a></tt><tt class="py-op">)</tt> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> </tt>
<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"><tt class="py-comment"># qualifiers escape quotes using double quotes</tt> </tt>
<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-457" class="py-name" targets="Variable Bio.expressions.genbank.quote=Bio.expressions.genbank-module.html#quote"><a title="Bio.expressions.genbank.quote" class="py-name" href="#" onclick="return doclink('link-457', 'quote', 'link-457');">quote</a></tt> <tt class="py-op">=</tt> <tt id="link-458" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-458', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-459" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-459', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">'"'</tt><tt class="py-op">)</tt> </tt>
<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"><tt id="link-460" class="py-name" targets="Variable Bio.expressions.genbank.quoted_chars=Bio.expressions.genbank-module.html#quoted_chars"><a title="Bio.expressions.genbank.quoted_chars" class="py-name" href="#" onclick="return doclink('link-460', 'quoted_chars', 'link-460');">quoted_chars</a></tt> <tt class="py-op">=</tt> <tt id="link-461" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-461', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-462" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.feature_qualifier_description()=Bio.GenBank._FeatureConsumer-class.html#feature_qualifier_description,Method Bio.GenBank._RecordConsumer.feature_qualifier_description()=Bio.GenBank._RecordConsumer-class.html#feature_qualifier_description,Function Bio.Std.feature_qualifier_description()=Bio.Std-module.html#feature_qualifier_description"><a title="Bio.GenBank._FeatureConsumer.feature_qualifier_description
Bio.GenBank._RecordConsumer.feature_qualifier_description
Bio.Std.feature_qualifier_description" class="py-name" href="#" onclick="return doclink('link-462', 'feature_qualifier_description', 'link-462');">feature_qualifier_description</a></tt><tt class="py-op">(</tt><tt id="link-463" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-463', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-464" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-464', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">r'([^"\R]|"")*'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> </tt>
<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"><tt id="link-465" class="py-name" targets="Variable Bio.expressions.genbank.quoted_string=Bio.expressions.genbank-module.html#quoted_string"><a title="Bio.expressions.genbank.quoted_string" class="py-name" href="#" onclick="return doclink('link-465', 'quoted_string', 'link-465');">quoted_string</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt id="link-466" class="py-name"><a title="Bio.expressions.genbank.quote" class="py-name" href="#" onclick="return doclink('link-466', 'quote', 'link-457');">quote</a></tt> <tt class="py-op">+</tt> <tt id="link-467" class="py-name"><a title="Bio.expressions.genbank.quoted_chars" class="py-name" href="#" onclick="return doclink('link-467', 'quoted_chars', 'link-460');">quoted_chars</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt id="link-468" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-468', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-469" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-469', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-470" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-470', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-471" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-471', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-472" class="py-name"><a title="Bio.expressions.genbank.qualifier_space" class="py-name" href="#" onclick="return doclink('link-472', 'qualifier_space', 'link-18');">qualifier_space</a></tt> <tt class="py-op">+</tt> <tt id="link-473" class="py-name"><a title="Bio.expressions.genbank.quoted_chars" class="py-name" href="#" onclick="return doclink('link-473', 'quoted_chars', 'link-460');">quoted_chars</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt id="link-474" class="py-name"><a title="Bio.expressions.genbank.quote" class="py-name" href="#" onclick="return doclink('link-474', 'quote', 'link-457');">quote</a></tt> <tt class="py-op">+</tt> <tt id="link-475" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-475', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-476" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-476', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"><tt id="link-477" class="py-name" targets="Variable Bio.expressions.genbank.unquoted_string=Bio.expressions.genbank-module.html#unquoted_string"><a title="Bio.expressions.genbank.unquoted_string" class="py-name" href="#" onclick="return doclink('link-477', 'unquoted_string', 'link-477');">unquoted_string</a></tt> <tt class="py-op">=</tt> <tt id="link-478" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-478', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-479" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-479', 'AssertNot', 'link-440');">AssertNot</a></tt><tt class="py-op">(</tt><tt id="link-480" class="py-name"><a title="Bio.expressions.genbank.quote" class="py-name" href="#" onclick="return doclink('link-480', 'quote', 'link-457');">quote</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt id="link-481" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-481', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-482" class="py-name"><a title="Bio.GenBank._FeatureConsumer.feature_qualifier_description
Bio.GenBank._RecordConsumer.feature_qualifier_description
Bio.Std.feature_qualifier_description" class="py-name" href="#" onclick="return doclink('link-482', 'feature_qualifier_description', 'link-462');">feature_qualifier_description</a></tt><tt class="py-op">(</tt><tt id="link-483" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-483', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-484" class="py-name"><a title="Martel.UntilEol" class="py-name" href="#" onclick="return doclink('link-484', 'UntilEol', 'link-35');">UntilEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt id="link-485" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-485', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-486" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-486', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> </tt>
<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"><tt id="link-487" class="py-name" targets="Variable Bio.expressions.genbank.qualifier=Bio.expressions.genbank-module.html#qualifier"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-487', 'qualifier', 'link-487');">qualifier</a></tt> <tt class="py-op">=</tt> <tt id="link-488" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-488', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-489" class="py-name" targets="Function Bio.Std.feature_qualifier()=Bio.Std-module.html#feature_qualifier,Variable Bio.expressions.embl.embl65.feature_qualifier=Bio.expressions.embl.embl65-module.html#feature_qualifier"><a title="Bio.Std.feature_qualifier
Bio.expressions.embl.embl65.feature_qualifier" class="py-name" href="#" onclick="return doclink('link-489', 'feature_qualifier', 'link-489');">feature_qualifier</a></tt><tt class="py-op">(</tt> </tt>
<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt id="link-490" class="py-name"><a title="Bio.expressions.genbank.qualifier_space" class="py-name" href="#" onclick="return doclink('link-490', 'qualifier_space', 'link-18');">qualifier_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt id="link-491" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-491', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-492" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-492', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"/"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt id="link-493" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-493', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-494" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.feature_qualifier_name()=Bio.GenBank._FeatureConsumer-class.html#feature_qualifier_name,Method Bio.GenBank._RecordConsumer.feature_qualifier_name()=Bio.GenBank._RecordConsumer-class.html#feature_qualifier_name,Function Bio.Std.feature_qualifier_name()=Bio.Std-module.html#feature_qualifier_name"><a title="Bio.GenBank._FeatureConsumer.feature_qualifier_name
Bio.GenBank._RecordConsumer.feature_qualifier_name
Bio.Std.feature_qualifier_name" class="py-name" href="#" onclick="return doclink('link-494', 'feature_qualifier_name', 'link-494');">feature_qualifier_name</a></tt><tt class="py-op">(</tt><tt id="link-495" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-495', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-496" class="py-name" targets="Function Martel.Word()=Martel-module.html#Word"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-496', 'Word', 'link-496');">Word</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_qualifier_name"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-497" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-497', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-498" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-498', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">|</tt> <tt class="py-comment"># '/pseudo'</tt> </tt>
<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-499" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-499', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-500" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-500', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"="</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt id="link-501" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-501', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-502" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-502', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_qualifier_description"</tt><tt class="py-op">,</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-503" class="py-name"><a title="Bio.expressions.genbank.unquoted_string" class="py-name" href="#" onclick="return doclink('link-503', 'unquoted_string', 'link-477');">unquoted_string</a></tt> <tt class="py-op">|</tt> <tt class="py-comment"># '/evidence=experimental'</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> <tt id="link-504" class="py-name"><a title="Bio.expressions.genbank.quoted_string" class="py-name" href="#" onclick="return doclink('link-504', 'quoted_string', 'link-465');">quoted_string</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-comment"># '/translation="AAAAAAAA....</tt> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-comment"># AAAAAAAAAAAAAAAAAAAA'</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> </tt>
<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"><tt id="link-505" class="py-name" targets="Function Bio.Std.feature()=Bio.Std-module.html#feature,Variable Bio.expressions.embl.embl65.feature=Bio.expressions.embl.embl65-module.html#feature,Variable Bio.expressions.genbank.feature=Bio.expressions.genbank-module.html#feature"><a title="Bio.Std.feature
Bio.expressions.embl.embl65.feature
Bio.expressions.genbank.feature" class="py-name" href="#" onclick="return doclink('link-505', 'feature', 'link-505');">feature</a></tt> <tt class="py-op">=</tt> <tt id="link-506" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-506', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-507" class="py-name"><a title="Bio.Std.feature
Bio.expressions.embl.embl65.feature
Bio.expressions.genbank.feature" class="py-name" href="#" onclick="return doclink('link-507', 'feature', 'link-505');">feature</a></tt><tt class="py-op">(</tt><tt id="link-508" class="py-name"><a title="Bio.expressions.genbank.feature_key_line" class="py-name" href="#" onclick="return doclink('link-508', 'feature_key_line', 'link-449');">feature_key_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt id="link-509" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-509', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-510" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-510', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-511" class="py-name"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-511', 'qualifier', 'link-487');">qualifier</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"><tt id="link-512" class="py-name" targets="Function Bio.Std.feature_block()=Bio.Std-module.html#feature_block,Variable Bio.expressions.genbank.feature_block=Bio.expressions.genbank-module.html#feature_block,Variable Bio.expressions.swissprot.sprot38.feature_block=Bio.expressions.swissprot.sprot38-module.html#feature_block,Variable Martel.test.test_swissprot38.feature_block=Martel.test.test_swissprot38-module.html#feature_block,Variable Martel.test.testformats.swissprot38.feature_block=Martel.test.testformats.swissprot38-module.html#feature_block"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-512', 'feature_block', 'link-512');">feature_block</a></tt> <tt class="py-op">=</tt> <tt id="link-513" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-513', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-514" class="py-name"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-514', 'feature_block', 'link-512');">feature_block</a></tt><tt class="py-op">(</tt><tt id="link-515" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-515', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-516" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-516', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-517" class="py-name"><a title="Bio.Std.feature
Bio.expressions.embl.embl65.feature
Bio.expressions.genbank.feature" class="py-name" href="#" onclick="return doclink('link-517', 'feature', 'link-505');">feature</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-op">{</tt><tt class="py-string">"location-style"</tt> <tt class="py-op">:</tt> <tt class="py-string">"genbank"</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"><tt class="py-comment"># BASE COUNT 28300 a 15069 c 15360 g 27707 t</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-518" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.base_count()=Bio.GenBank._FeatureConsumer-class.html#base_count,Method Bio.GenBank._RecordConsumer.base_count()=Bio.GenBank._RecordConsumer-class.html#base_count,Variable Bio.expressions.genbank.base_count=Bio.expressions.genbank-module.html#base_count"><a title="Bio.GenBank._FeatureConsumer.base_count
Bio.GenBank._RecordConsumer.base_count
Bio.expressions.genbank.base_count" class="py-name" href="#" onclick="return doclink('link-518', 'base_count', 'link-518');">base_count</a></tt> <tt class="py-op">=</tt> <tt id="link-519" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-519', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-520" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-520', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"base_count"</tt><tt class="py-op">,</tt> </tt>
<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> <tt id="link-521" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-521', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-522" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-522', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w\d ]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"><tt id="link-523" class="py-name" targets="Variable Bio.expressions.genbank.base_count_line=Bio.expressions.genbank-module.html#base_count_line"><a title="Bio.expressions.genbank.base_count_line" class="py-name" href="#" onclick="return doclink('link-523', 'base_count_line', 'link-523');">base_count_line</a></tt> <tt class="py-op">=</tt> <tt id="link-524" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-524', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-525" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-525', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"base_count_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt id="link-526" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-526', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-527" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-527', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"BASE COUNT"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt id="link-528" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-528', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt id="link-529" class="py-name"><a title="Bio.GenBank._FeatureConsumer.base_count
Bio.GenBank._RecordConsumer.base_count
Bio.expressions.genbank.base_count" class="py-name" href="#" onclick="return doclink('link-529', 'base_count', 'link-518');">base_count</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> <tt id="link-530" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-530', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-531" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-531', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"><tt class="py-comment"># ORIGIN </tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># 1 ggacaaggcc aaggatgctg ctgctgcagc tggagcttcc gcgcaacaag taaacagata</tt> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-532" class="py-name" targets="Variable Bio.expressions.genbank.origin_line=Bio.expressions.genbank-module.html#origin_line"><a title="Bio.expressions.genbank.origin_line" class="py-name" href="#" onclick="return doclink('link-532', 'origin_line', 'link-532');">origin_line</a></tt> <tt class="py-op">=</tt> <tt id="link-533" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-533', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-534" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-534', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"origin_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt id="link-535" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-535', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-536" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-536', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"ORIGIN"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-537" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-537', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-538" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-538', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"origin_name"</tt><tt class="py-op">)</tt> <tt class="py-op">|</tt> </tt>
<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt id="link-539" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-539', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-540" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-540', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> </tt>
<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"><tt id="link-541" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.base_number()=Bio.GenBank._FeatureConsumer-class.html#base_number,Variable Bio.expressions.genbank.base_number=Bio.expressions.genbank-module.html#base_number"><a title="Bio.GenBank._FeatureConsumer.base_number
Bio.expressions.genbank.base_number" class="py-name" href="#" onclick="return doclink('link-541', 'base_number', 'link-541');">base_number</a></tt> <tt class="py-op">=</tt> <tt id="link-542" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-542', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-543" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-543', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"base_number"</tt><tt class="py-op">,</tt> </tt>
<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> <tt id="link-544" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-544', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-545" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-545', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"><tt id="link-546" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.sequence()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence,Variable Bio.Emboss.primer3_format.sequence=Bio.Emboss.primer3_format-module.html#sequence,Method Bio.FSSP.FSSPAlignDict.sequence()=Bio.FSSP.FSSPAlignDict-class.html#sequence,Method Bio.GenBank._FeatureConsumer.sequence()=Bio.GenBank._FeatureConsumer-class.html#sequence,Method Bio.GenBank._RecordConsumer.sequence()=Bio.GenBank._RecordConsumer-class.html#sequence,Method Bio.IntelliGenetics._RecordConsumer.sequence()=Bio.IntelliGenetics._RecordConsumer-class.html#sequence,Method Bio.Rebase._RecordConsumer.sequence()=Bio.Rebase._RecordConsumer-class.html#sequence,Function Bio.Std.sequence()=Bio.Std-module.html#sequence,Module Bio.builders.SeqRecord.sequence=Bio.builders.SeqRecord.sequence-module.html,Variable Bio.expressions.fasta.sequence=Bio.expressions.fasta-module.html#sequence,Variable Bio.expressions.genbank.sequence=Bio.expressions.genbank-module.html#sequence,Variable Bio.expressions.swissprot.sprot38.sequence=Bio.expressions.swissprot.sprot38-module.html#sequence,Module Bio.formatdefs.sequence=Bio.formatdefs.sequence-module.html,Variable Bio.formatdefs.sequence.sequence=Bio.formatdefs.sequence-module.html#sequence,Variable Martel.test.test_swissprot38.sequence=Martel.test.test_swissprot38-module.html#sequence,Variable Martel.test.testformats.swissprot38.sequence=Martel.test.testformats.swissprot38-module.html#sequence"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-546', 'sequence', 'link-546');">sequence</a></tt> <tt class="py-op">=</tt> <tt id="link-547" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-547', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-548" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-548', 'sequence', 'link-546');">sequence</a></tt><tt class="py-op">(</tt><tt id="link-549" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-549', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-550" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-550', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence"</tt><tt class="py-op">,</tt> </tt>
<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt id="link-551" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-551', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-552" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-552', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\w]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"><tt id="link-553" class="py-name" targets="Variable Bio.expressions.genbank.sequence_plus_spaces=Bio.expressions.genbank-module.html#sequence_plus_spaces"><a title="Bio.expressions.genbank.sequence_plus_spaces" class="py-name" href="#" onclick="return doclink('link-553', 'sequence_plus_spaces', 'link-553');">sequence_plus_spaces</a></tt> <tt class="py-op">=</tt> <tt id="link-554" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-554', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-555" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-555', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_plus_spaces"</tt><tt class="py-op">,</tt> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt id="link-556" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-556', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-557" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-557', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-558" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-558', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-559" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-559', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt id="link-560" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-560', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-561" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-561', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-562" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-562', 'sequence', 'link-546');">sequence</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt id="link-563" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-563', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-564" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-564', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-565" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-565', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-566" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-566', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"><tt id="link-567" class="py-name" targets="Method Bio.NBRF._RecordConsumer.sequence_line()=Bio.NBRF._RecordConsumer-class.html#sequence_line,Variable Bio.NBRF.nbrf_format.sequence_line=Bio.NBRF.nbrf_format-module.html#sequence_line,Variable Bio.expressions.genbank.sequence_line=Bio.expressions.genbank-module.html#sequence_line"><a title="Bio.NBRF._RecordConsumer.sequence_line
Bio.NBRF.nbrf_format.sequence_line
Bio.expressions.genbank.sequence_line" class="py-name" href="#" onclick="return doclink('link-567', 'sequence_line', 'link-567');">sequence_line</a></tt> <tt class="py-op">=</tt> <tt id="link-568" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-568', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-569" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-569', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt id="link-570" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-570', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt id="link-571" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-571', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-572" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-572', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-573" class="py-name"><a title="Bio.GenBank._FeatureConsumer.base_number
Bio.expressions.genbank.base_number" class="py-name" href="#" onclick="return doclink('link-573', 'base_number', 'link-541');">base_number</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"> <tt id="link-574" class="py-name"><a title="Bio.expressions.genbank.sequence_plus_spaces" class="py-name" href="#" onclick="return doclink('link-574', 'sequence_plus_spaces', 'link-553');">sequence_plus_spaces</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> <tt id="link-575" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-575', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-576" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-576', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> </tt>
<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"><tt id="link-577" class="py-name" targets="Variable Bio.expressions.genbank.sequence_entry=Bio.expressions.genbank-module.html#sequence_entry"><a title="Bio.expressions.genbank.sequence_entry" class="py-name" href="#" onclick="return doclink('link-577', 'sequence_entry', 'link-577');">sequence_entry</a></tt> <tt class="py-op">=</tt> <tt id="link-578" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-578', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-579" class="py-name" targets="Variable Bio.CDD.cdd_format.sequence_block=Bio.CDD.cdd_format-module.html#sequence_block,Variable Bio.NBRF.nbrf_format.sequence_block=Bio.NBRF.nbrf_format-module.html#sequence_block,Function Bio.Std.sequence_block()=Bio.Std-module.html#sequence_block"><a title="Bio.CDD.cdd_format.sequence_block
Bio.NBRF.nbrf_format.sequence_block
Bio.Std.sequence_block" class="py-name" href="#" onclick="return doclink('link-579', 'sequence_block', 'link-579');">sequence_block</a></tt><tt class="py-op">(</tt><tt id="link-580" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-580', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-581" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-581', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_entry"</tt><tt class="py-op">,</tt> </tt>
<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> <tt id="link-582" class="py-name"><a title="Bio.expressions.genbank.origin_line" class="py-name" href="#" onclick="return doclink('link-582', 'origin_line', 'link-532');">origin_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt id="link-583" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-583', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-584" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-584', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-585" class="py-name"><a title="Bio.NBRF._RecordConsumer.sequence_line
Bio.NBRF.nbrf_format.sequence_line
Bio.expressions.genbank.sequence_line" class="py-name" href="#" onclick="return doclink('link-585', 'sequence_line', 'link-567');">sequence_line</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> </tt>
<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"><tt class="py-comment"># CONTIG</tt> </tt>
<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># this is the contig information for RefSeq records</tt> </tt>
<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"><tt id="link-586" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.contig_location()=Bio.GenBank._FeatureConsumer-class.html#contig_location,Method Bio.GenBank._RecordConsumer.contig_location()=Bio.GenBank._RecordConsumer-class.html#contig_location,Variable Bio.expressions.genbank.contig_location=Bio.expressions.genbank-module.html#contig_location"><a title="Bio.GenBank._FeatureConsumer.contig_location
Bio.GenBank._RecordConsumer.contig_location
Bio.expressions.genbank.contig_location" class="py-name" href="#" onclick="return doclink('link-586', 'contig_location', 'link-586');">contig_location</a></tt> <tt class="py-op">=</tt> <tt id="link-587" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-587', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-588" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-588', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"contig_location"</tt><tt class="py-op">,</tt> </tt>
<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt id="link-589" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-589', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-590" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-590', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_location"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt id="link-591" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-591', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-592" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-592', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-593" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-593', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-594" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-594', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt id="link-595" class="py-name"><a title="Bio.LocusLink.locus_format.INDENT
Bio.expressions.genbank.INDENT" class="py-name" href="#" onclick="return doclink('link-595', 'INDENT', 'link-5');">INDENT</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt id="link-596" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-596', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-597" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-597', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"(?!/)"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> <tt id="link-598" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-598', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-599" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-599', 'ToEol', 'link-270');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-string">"feature_location"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> </tt>
<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"><tt id="link-600" class="py-name" targets="Variable Bio.expressions.genbank.contig_block=Bio.expressions.genbank-module.html#contig_block"><a title="Bio.expressions.genbank.contig_block" class="py-name" href="#" onclick="return doclink('link-600', 'contig_block', 'link-600');">contig_block</a></tt> <tt class="py-op">=</tt> <tt id="link-601" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-601', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-602" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-602', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"contig_block"</tt><tt class="py-op">,</tt> </tt>
<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt id="link-603" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-603', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-604" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-604', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"CONTIG"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> <tt id="link-605" class="py-name"><a title="Bio.MetaTool.metatool_format.blank_space
Bio.expressions.genbank.blank_space" class="py-name" href="#" onclick="return doclink('link-605', 'blank_space', 'link-8');">blank_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> <tt id="link-606" class="py-name"><a title="Bio.GenBank._FeatureConsumer.contig_location
Bio.GenBank._RecordConsumer.contig_location
Bio.expressions.genbank.contig_location" class="py-name" href="#" onclick="return doclink('link-606', 'contig_location', 'link-586');">contig_location</a></tt><tt class="py-op">)</tt> </tt>
<a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> </tt>
<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"><tt class="py-comment"># all done!</tt> </tt>
<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># //</tt> </tt>
<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-607" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.record_end()=Bio.GenBank._FeatureConsumer-class.html#record_end,Method Bio.GenBank._RecordConsumer.record_end()=Bio.GenBank._RecordConsumer-class.html#record_end,Variable Bio.expressions.genbank.record_end=Bio.expressions.genbank-module.html#record_end,Variable Bio.expressions.hmmpfam.record_end=Bio.expressions.hmmpfam-module.html#record_end"><a title="Bio.GenBank._FeatureConsumer.record_end
Bio.GenBank._RecordConsumer.record_end
Bio.expressions.genbank.record_end
Bio.expressions.hmmpfam.record_end" class="py-name" href="#" onclick="return doclink('link-607', 'record_end', 'link-607');">record_end</a></tt> <tt class="py-op">=</tt> <tt id="link-608" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-608', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-609" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-609', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"record_end"</tt><tt class="py-op">,</tt> </tt>
<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt id="link-610" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-610', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-611" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-611', 'Str', 'link-13');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"//"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt id="link-612" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-612', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-613" class="py-name"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-613', 'Rep1', 'link-62');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-614" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-614', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-615" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-615', 'AnyEol', 'link-37');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> </tt>
<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"><tt id="link-616" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-616', 'record', 'link-616');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-617" class="py-name"><a title="Bio.Std" class="py-name" href="#" onclick="return doclink('link-617', 'Std', 'link-4');">Std</a></tt><tt class="py-op">.</tt><tt id="link-618" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-618', 'record', 'link-616');">record</a></tt><tt class="py-op">(</tt><tt id="link-619" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-619', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-620" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-620', 'Group', 'link-46');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"genbank_record"</tt><tt class="py-op">,</tt> </tt>
<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt id="link-621" class="py-name"><a title="Bio.LocusLink.locus_format.locus_line
Bio.expressions.genbank.locus_line" class="py-name" href="#" onclick="return doclink('link-621', 'locus_line', 'link-118');">locus_line</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt id="link-622" class="py-name"><a title="Bio.expressions.genbank.definition_block" class="py-name" href="#" onclick="return doclink('link-622', 'definition_block', 'link-140');">definition_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> <tt id="link-623" class="py-name"><a title="Bio.expressions.genbank.accession_block" class="py-name" href="#" onclick="return doclink('link-623', 'accession_block', 'link-156');">accession_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt id="link-624" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-624', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-625" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-625', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-626" class="py-name"><a title="Bio.expressions.genbank.nid_line" class="py-name" href="#" onclick="return doclink('link-626', 'nid_line', 'link-191');">nid_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt id="link-627" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-627', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-628" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-628', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-629" class="py-name"><a title="Bio.expressions.genbank.pid_line" class="py-name" href="#" onclick="return doclink('link-629', 'pid_line', 'link-205');">pid_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> <tt id="link-630" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-630', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-631" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-631', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-632" class="py-name"><a title="Bio.expressions.genbank.version_line" class="py-name" href="#" onclick="return doclink('link-632', 'version_line', 'link-228');">version_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"> <tt id="link-633" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-633', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-634" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-634', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-635" class="py-name"><a title="Bio.expressions.genbank.db_source_block" class="py-name" href="#" onclick="return doclink('link-635', 'db_source_block', 'link-243');">db_source_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"> <tt id="link-636" class="py-name"><a title="Bio.expressions.genbank.keywords_block" class="py-name" href="#" onclick="return doclink('link-636', 'keywords_block', 'link-245');">keywords_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> <tt id="link-637" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-637', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-638" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-638', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-639" class="py-name"><a title="Bio.expressions.genbank.segment_line" class="py-name" href="#" onclick="return doclink('link-639', 'segment_line', 'link-256');">segment_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> <tt id="link-640" class="py-name"><a title="Bio.CDD.cdd_format.source_block
Bio.expressions.genbank.source_block" class="py-name" href="#" onclick="return doclink('link-640', 'source_block', 'link-264');">source_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"> <tt id="link-641" class="py-name"><a title="Bio.expressions.genbank.organism_block" class="py-name" href="#" onclick="return doclink('link-641', 'organism_block', 'link-279');">organism_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> <tt id="link-642" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-642', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-643" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-643', 'Rep', 'link-31');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-644" class="py-name"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-644', 'reference', 'link-342');">reference</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> <tt id="link-645" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-645', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-646" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-646', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-647" class="py-name"><a title="Bio.GenBank._RecordConsumer.primary
Bio.expressions.genbank.primary" class="py-name" href="#" onclick="return doclink('link-647', 'primary', 'link-405');">primary</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt>\ </tt>
<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt id="link-648" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-648', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-649" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-649', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-650" class="py-name"><a title="Bio.expressions.genbank.comment_block" class="py-name" href="#" onclick="return doclink('link-650', 'comment_block', 'link-365');">comment_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt id="link-651" class="py-name"><a title="Bio.GenBank._FeatureConsumer.features_line
Bio.GenBank._RecordConsumer.features_line
Bio.expressions.genbank.features_line" class="py-name" href="#" onclick="return doclink('link-651', 'features_line', 'link-412');">features_line</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt id="link-652" class="py-name"><a title="Bio.Std.feature_block
Bio.expressions.genbank.feature_block
Bio.expressions.swissprot.sprot38.feature_block
Martel.test.test_swissprot38.feature_block
Martel.test.testformats.swissprot38.feature_block" class="py-name" href="#" onclick="return doclink('link-652', 'feature_block', 'link-512');">feature_block</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt id="link-653" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-653', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-654" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-654', 'Alt', 'link-50');">Alt</a></tt><tt class="py-op">(</tt><tt id="link-655" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-655', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-656" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-656', 'Opt', 'link-81');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-657" class="py-name"><a title="Bio.expressions.genbank.base_count_line" class="py-name" href="#" onclick="return doclink('link-657', 'base_count_line', 'link-523');">base_count_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt id="link-658" class="py-name"><a title="Bio.expressions.genbank.sequence_entry" class="py-name" href="#" onclick="return doclink('link-658', 'sequence_entry', 'link-577');">sequence_entry</a></tt><tt class="py-op">,</tt> </tt>
<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt id="link-659" class="py-name"><a title="Bio.expressions.genbank.contig_block" class="py-name" href="#" onclick="return doclink('link-659', 'contig_block', 'link-600');">contig_block</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt id="link-660" class="py-name"><a title="Bio.GenBank._FeatureConsumer.record_end
Bio.GenBank._RecordConsumer.record_end
Bio.expressions.genbank.record_end
Bio.expressions.hmmpfam.record_end" class="py-name" href="#" onclick="return doclink('link-660', 'record_end', 'link-607');">record_end</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> </tt>
<a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"><tt class="py-comment"># if you download a big mess of GenBank files, it'll have a header</tt> </tt>
<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># in that case you should be using 'ncbi_format' instead of the standard</tt> </tt>
<a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># 'format'</tt> </tt>
<a name="L476"></a><tt class="py-lineno">476</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-661" class="py-name" targets="Variable Bio.Wise.dnal.Statistics.header=Bio.Wise.dnal.Statistics-class.html#header,Variable Bio.expressions.blast.ncbiblast.header=Bio.expressions.blast.ncbiblast-module.html#header,Variable Bio.expressions.blast.wublast.header=Bio.expressions.blast.wublast-module.html#header,Variable Bio.expressions.blocks.header=Bio.expressions.blocks-module.html#header,Variable Bio.expressions.genbank.header=Bio.expressions.genbank-module.html#header,Variable Bio.expressions.hmmpfam.header=Bio.expressions.hmmpfam-module.html#header"><a title="Bio.Wise.dnal.Statistics.header
Bio.expressions.blast.ncbiblast.header
Bio.expressions.blast.wublast.header
Bio.expressions.blocks.header
Bio.expressions.genbank.header
Bio.expressions.hmmpfam.header" class="py-name" href="#" onclick="return doclink('link-661', 'header', 'link-661');">header</a></tt> <tt class="py-op">=</tt> <tt id="link-662" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-662', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-663" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-663', 'Re', 'link-57');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"""\</tt> </tt>
<a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"><tt class="py-string">(?P<filename>[^ ]+) +Genetic Sequence Data Bank</tt> </tt>
<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"><tt class="py-string"> *(?P<release_day>\d+) (?P<release_month>\w+) (?P<release_year>\d+)</tt> </tt>
<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line"><tt class="py-string"> *(?P<data_bank_name>[^\R]+)</tt> </tt>
<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"><tt class="py-string"> *(?P<data_bank_name>[^\R]+)</tt> </tt>
<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"><tt class="py-string"> *(?P<num_loci>\d+) loci, *(?P<num_bases>\d+) bases, from *(?P<num_reports>\d+) reported sequences</tt> </tt>
<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"><tt class="py-string">"""</tt><tt class="py-op">)</tt> </tt>
<a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"> </tt>
<a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line"><tt id="link-664" class="py-name" targets="Variable Bio.expressions.genbank.ncbi_format=Bio.expressions.genbank-module.html#ncbi_format"><a title="Bio.expressions.genbank.ncbi_format" class="py-name" href="#" onclick="return doclink('link-664', 'ncbi_format', 'link-664');">ncbi_format</a></tt> <tt class="py-op">=</tt> <tt id="link-665" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-665', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-666" class="py-name" targets="Class Martel.Expression.HeaderFooter=Martel.Expression.HeaderFooter-class.html"><a title="Martel.Expression.HeaderFooter" class="py-name" href="#" onclick="return doclink('link-666', 'HeaderFooter', 'link-666');">HeaderFooter</a></tt><tt class="py-op">(</tt><tt class="py-string">"genbank"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"format"</tt> <tt class="py-op">:</tt> <tt class="py-string">"ncbi_genbank"</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt id="link-667" class="py-name"><a title="Bio.Wise.dnal.Statistics.header
Bio.expressions.blast.ncbiblast.header
Bio.expressions.blast.wublast.header
Bio.expressions.blocks.header
Bio.expressions.genbank.header
Bio.expressions.hmmpfam.header" class="py-name" href="#" onclick="return doclink('link-667', 'header', 'link-661');">header</a></tt><tt class="py-op">,</tt> <tt id="link-668" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-668', 'RecordReader', 'link-2');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-669" class="py-name" targets="Class Martel.RecordReader.CountLines=Martel.RecordReader.CountLines-class.html"><a title="Martel.RecordReader.CountLines" class="py-name" href="#" onclick="return doclink('link-669', 'CountLines', 'link-669');">CountLines</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">10</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"> <tt id="link-670" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-670', 'record', 'link-616');">record</a></tt><tt class="py-op">,</tt> <tt id="link-671" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-671', 'RecordReader', 'link-2');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-672" class="py-name" targets="Class Martel.RecordReader.EndsWith=Martel.RecordReader.EndsWith-class.html"><a title="Martel.RecordReader.EndsWith" class="py-name" href="#" onclick="return doclink('link-672', 'EndsWith', 'link-672');">EndsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"//"</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> </tt>
<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"><tt id="link-673" class="py-name" targets="Method Bio.Restriction.Restriction.RestrictionBatch.format()=Bio.Restriction.Restriction.RestrictionBatch-class.html#format,Variable Bio.expressions.blast.ncbiblast.format=Bio.expressions.blast.ncbiblast-module.html#format,Variable Bio.expressions.blast.wublast.format=Bio.expressions.blast.wublast-module.html#format,Variable Bio.expressions.blocks.format=Bio.expressions.blocks-module.html#format,Variable Bio.expressions.embl.embl65.format=Bio.expressions.embl.embl65-module.html#format,Variable Bio.expressions.fasta.format=Bio.expressions.fasta-module.html#format,Variable Bio.expressions.genbank.format=Bio.expressions.genbank-module.html#format,Variable Bio.expressions.hmmpfam.format=Bio.expressions.hmmpfam-module.html#format,Variable Bio.expressions.swissprot.ipi.format=Bio.expressions.swissprot.ipi-module.html#format,Variable Bio.expressions.swissprot.speclist.format=Bio.expressions.swissprot.speclist-module.html#format,Variable Bio.expressions.swissprot.sprot38.format=Bio.expressions.swissprot.sprot38-module.html#format,Variable Bio.expressions.swissprot.sprot40.format=Bio.expressions.swissprot.sprot40-module.html#format,Variable Bio.expressions.transfac.format=Bio.expressions.transfac-module.html#format,Variable Martel.test.test_swissprot38.format=Martel.test.test_swissprot38-module.html#format,Variable Martel.test.testformats.swissprot38.format=Martel.test.testformats.swissprot38-module.html#format"><a title="Bio.Restriction.Restriction.RestrictionBatch.format
Bio.expressions.blast.ncbiblast.format
Bio.expressions.blast.wublast.format
Bio.expressions.blocks.format
Bio.expressions.embl.embl65.format
Bio.expressions.fasta.format
Bio.expressions.genbank.format
Bio.expressions.hmmpfam.format
Bio.expressions.swissprot.ipi.format
Bio.expressions.swissprot.speclist.format
Bio.expressions.swissprot.sprot38.format
Bio.expressions.swissprot.sprot40.format
Bio.expressions.transfac.format
Martel.test.test_swissprot38.format
Martel.test.testformats.swissprot38.format" class="py-name" href="#" onclick="return doclink('link-673', 'format', 'link-673');">format</a></tt> <tt class="py-op">=</tt> <tt id="link-674" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-674', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-675" class="py-name" targets="Class Martel.Expression.ParseRecords=Martel.Expression.ParseRecords-class.html"><a title="Martel.Expression.ParseRecords" class="py-name" href="#" onclick="return doclink('link-675', 'ParseRecords', 'link-675');">ParseRecords</a></tt><tt class="py-op">(</tt><tt class="py-string">"genbank"</tt><tt class="py-op">,</tt> <tt class="py-op">{</tt><tt class="py-string">"format"</tt> <tt class="py-op">:</tt> <tt class="py-string">"genbank"</tt><tt class="py-op">}</tt><tt class="py-op">,</tt> </tt>
<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt id="link-676" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-676', 'record', 'link-616');">record</a></tt><tt class="py-op">,</tt> <tt id="link-677" class="py-name"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-677', 'RecordReader', 'link-2');">RecordReader</a></tt><tt class="py-op">.</tt><tt id="link-678" class="py-name" targets="Class Martel.RecordReader.StartsWith=Martel.RecordReader.StartsWith-class.html"><a title="Martel.RecordReader.StartsWith" class="py-name" href="#" onclick="return doclink('link-678', 'StartsWith', 'link-678');">StartsWith</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">"LOCUS "</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> </tt><script type="text/javascript">
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