<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.dbdefs.swissprot</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.dbdefs-module.html">Package dbdefs</a> :: Module swissprot </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.dbdefs.swissprot-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module swissprot</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.dbdefs.swissprot-pysrc.html">source code</a></span></p> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.dbdefs.swissprot-module.html#swissprot_expasy_cgi" class="summary-name">swissprot_expasy_cgi</a> = <code title="CGIDB(name= "swissprot-expasy-cgi", doc= "Retrieve a swiss-prot entry \ by ID from ExPASy.", cgi= "http://www.expasy.ch/cgi-bin/get-sprot-raw.\ pl", delay= 5.0, params= [], key= "", failure_cases= [(blank_expr, "no\ results")])">CGIDB(name= "swissprot-expasy-cgi", doc<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.dbdefs.swissprot-module.html#swissprot_usmirror_cgi" class="summary-name">swissprot_usmirror_cgi</a> = <code title="CGIDB(name= "swissprot-usmirror-cgi", doc= "Retrieve a swiss-prot entr\ y by ID from the US mirror.", cgi= "http://us.expasy.org/cgi-bin/get-s\ prot-raw.pl", delay= 5.0, params= [], key= "", failure_cases= [(blank_\ expr, "no results")])">CGIDB(name= "swissprot-usmirror-cgi",<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.dbdefs.swissprot-module.html#swissprot" class="summary-name">swissprot</a> = <code title="DBGroup(name= "swissprot", behavior= "serial", doc= "Retrieve a swiss-\ prot entry by ID. Will try different servers until one works.",)">DBGroup(name= "swissprot", behavior= "serial", doc<code class="variable-ellipsis">...</code></code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="swissprot_expasy_cgi"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">swissprot_expasy_cgi</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> CGIDB(name= "swissprot-expasy-cgi", doc= "Retrieve a swiss-prot entry <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> by ID from ExPASy.", cgi= "http://www.expasy.ch/cgi-bin/get-sprot-raw.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> pl", delay= 5.0, params= [], key= "", failure_cases= [(blank_expr, "no<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> results")]) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="swissprot_usmirror_cgi"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">swissprot_usmirror_cgi</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> CGIDB(name= "swissprot-usmirror-cgi", doc= "Retrieve a swiss-prot entr<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> y by ID from the US mirror.", cgi= "http://us.expasy.org/cgi-bin/get-s<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> prot-raw.pl", delay= 5.0, params= [], key= "", failure_cases= [(blank_<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> expr, "no results")]) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="swissprot"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">swissprot</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> DBGroup(name= "swissprot", behavior= "serial", doc= "Retrieve a swiss-<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> prot entry by ID. Will try different servers until one works.",) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:27 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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