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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.dbdefs-module.html">Package dbdefs</a> ::
Module interpro
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<h1 class="epydoc">Source Code for <a href="Bio.dbdefs.interpro-module.html">Module Bio.dbdefs.interpro</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Copyright 2002 by Jeffrey Chang. All rights reserved.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license. Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Package Bio.config=Bio.config-module.html"><a title="Bio.config" class="py-name" href="#" onclick="return doclink('link-1', 'config', 'link-1');">config</a></tt><tt class="py-op">.</tt><tt id="link-2" class="py-name" targets="Module Bio.config.DBRegistry=Bio.config.DBRegistry-module.html,Class Bio.config.DBRegistry.DBRegistry=Bio.config.DBRegistry.DBRegistry-class.html"><a title="Bio.config.DBRegistry
Bio.config.DBRegistry.DBRegistry" class="py-name" href="#" onclick="return doclink('link-2', 'DBRegistry', 'link-2');">DBRegistry</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name" targets="Class Bio.config.DBRegistry.CGIDB=Bio.config.DBRegistry.CGIDB-class.html"><a title="Bio.config.DBRegistry.CGIDB" class="py-name" href="#" onclick="return doclink('link-3', 'CGIDB', 'link-3');">CGIDB</a></tt><tt class="py-op">,</tt> <tt id="link-4" class="py-name" targets="Class Bio.config.DBRegistry.DBGroup=Bio.config.DBRegistry.DBGroup-class.html"><a title="Bio.config.DBRegistry.DBGroup" class="py-name" href="#" onclick="return doclink('link-4', 'DBGroup', 'link-4');">DBGroup</a></tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-5" class="py-name" targets="Module Bio.config._support=Bio.config._support-module.html,Module Bio.dbdefs._support=Bio.dbdefs._support-module.html"><a title="Bio.config._support
Bio.dbdefs._support" class="py-name" href="#" onclick="return doclink('link-5', '_support', 'link-5');">_support</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-comment"># This returns HTML-formatted data. Is there a way to get raw text?</tt> </tt>
<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-6" class="py-name" targets="Variable Bio.dbdefs.interpro.interpro_ebi_cgi=Bio.dbdefs.interpro-module.html#interpro_ebi_cgi"><a title="Bio.dbdefs.interpro.interpro_ebi_cgi" class="py-name" href="#" onclick="return doclink('link-6', 'interpro_ebi_cgi', 'link-6');">interpro_ebi_cgi</a></tt> <tt class="py-op">=</tt> <tt id="link-7" class="py-name"><a title="Bio.config.DBRegistry.CGIDB" class="py-name" href="#" onclick="return doclink('link-7', 'CGIDB', 'link-3');">CGIDB</a></tt><tt class="py-op">(</tt> </tt>
<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.name=Bio.Encodings.IUPACEncoding-module.html#name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-8', 'name', 'link-8');">name</a></tt><tt class="py-op">=</tt><tt class="py-string">"interpro-ebi-cgi"</tt><tt class="py-op">,</tt> </tt>
<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"> <tt class="py-name">cgi</tt><tt class="py-op">=</tt><tt class="py-string">'http://www.ebi.ac.uk/interpro/IEntry'</tt><tt class="py-op">,</tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> <tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Retrieve an InterPro entry"</tt><tt class="py-op">,</tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt class="py-name">delay</tt><tt class="py-op">=</tt><tt class="py-number">5.0</tt><tt class="py-op">,</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> <tt id="link-9" class="py-name" targets="Variable Bio.Translate.key=Bio.Translate-module.html#key"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-9', 'key', 'link-9');">key</a></tt><tt class="py-op">=</tt><tt class="py-string">"ac"</tt><tt class="py-op">,</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-name">failure_cases</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">(</tt><tt id="link-10" class="py-name" targets="Function Bio.dbdefs._support.has_str()=Bio.dbdefs._support-module.html#has_str"><a title="Bio.dbdefs._support.has_str" class="py-name" href="#" onclick="return doclink('link-10', 'has_str', 'link-10');">has_str</a></tt><tt class="py-op">(</tt><tt class="py-string">"No InterPro entry"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">"No InterPro entry"</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Module Bio.dbdefs.interpro=Bio.dbdefs.interpro-module.html,Variable Bio.dbdefs.interpro.interpro=Bio.dbdefs.interpro-module.html#interpro"><a title="Bio.dbdefs.interpro
Bio.dbdefs.interpro.interpro" class="py-name" href="#" onclick="return doclink('link-11', 'interpro', 'link-11');">interpro</a></tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name"><a title="Bio.config.DBRegistry.DBGroup" class="py-name" href="#" onclick="return doclink('link-12', 'DBGroup', 'link-4');">DBGroup</a></tt><tt class="py-op">(</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-13', 'name', 'link-8');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"interpro"</tt><tt class="py-op">,</tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-name">behavior</tt> <tt class="py-op">=</tt> <tt class="py-string">"serial"</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-op">)</tt> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt id="link-14" class="py-name"><a title="Bio.dbdefs.interpro
Bio.dbdefs.interpro.interpro" class="py-name" href="#" onclick="return doclink('link-14', 'interpro', 'link-11');">interpro</a></tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Variable Bio.Affy.CelFile.add=Bio.Affy.CelFile-module.html#add,Method Bio.EUtils.POM.ElementNode.add()=Bio.EUtils.POM.ElementNode-class.html#add,Method Bio.GFF.easy.Location.add()=Bio.GFF.easy.Location-class.html#add,Method Bio.Graphics.BasicChromosome._ChromosomeComponent.add()=Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add,Variable Bio.LogisticRegression.add=Bio.LogisticRegression-module.html#add,Variable Bio.MarkovModel.add=Bio.MarkovModel-module.html#add,Variable Bio.MaxEntropy.add=Bio.MaxEntropy-module.html#add,Variable Bio.NaiveBayes.add=Bio.NaiveBayes-module.html#add,Method Bio.Nexus.Nexus.StepMatrix.add()=Bio.Nexus.Nexus.StepMatrix-class.html#add,Method Bio.Nexus.Nodes.Chain.add()=Bio.Nexus.Nodes.Chain-class.html#add,Method Bio.PDB.Entity.Entity.add()=Bio.PDB.Entity.Entity-class.html#add,Method Bio.PDB.Residue.DisorderedResidue.add()=Bio.PDB.Residue.DisorderedResidue-class.html#add,Method Bio.PDB.Residue.Residue.add()=Bio.PDB.Residue.Residue-class.html#add,Method Bio.Pathway.Rep.HashSet.HashSet.add()=Bio.Pathway.Rep.HashSet.HashSet-class.html#add,Method Bio.Restriction.Restriction.RestrictionBatch.add()=Bio.Restriction.Restriction.RestrictionBatch-class.html#add,Variable Bio.Statistics.lowess.add=Bio.Statistics.lowess-module.html#add,Method Bio.config.FormatRegistry.FormatGroup.add()=Bio.config.FormatRegistry.FormatGroup-class.html#add,Method Bio.config.Registry.RegisterableGroup.add()=Bio.config.Registry.RegisterableGroup-class.html#add,Variable Bio.distance.add=Bio.distance-module.html#add,Variable Bio.kNN.add=Bio.kNN-module.html#add,Method Martel.Dispatch.MulticallEnd.add()=Martel.Dispatch.MulticallEnd-class.html#add,Method Martel.Dispatch.MulticallStart.add()=Martel.Dispatch.MulticallStart-class.html#add"><a title="Bio.Affy.CelFile.add
Bio.EUtils.POM.ElementNode.add
Bio.GFF.easy.Location.add
Bio.Graphics.BasicChromosome._ChromosomeComponent.add
Bio.LogisticRegression.add
Bio.MarkovModel.add
Bio.MaxEntropy.add
Bio.NaiveBayes.add
Bio.Nexus.Nexus.StepMatrix.add
Bio.Nexus.Nodes.Chain.add
Bio.PDB.Entity.Entity.add
Bio.PDB.Residue.DisorderedResidue.add
Bio.PDB.Residue.Residue.add
Bio.Pathway.Rep.HashSet.HashSet.add
Bio.Restriction.Restriction.RestrictionBatch.add
Bio.Statistics.lowess.add
Bio.config.FormatRegistry.FormatGroup.add
Bio.config.Registry.RegisterableGroup.add
Bio.distance.add
Bio.kNN.add
Martel.Dispatch.MulticallEnd.add
Martel.Dispatch.MulticallStart.add" class="py-name" href="#" onclick="return doclink('link-15', 'add', 'link-15');">add</a></tt><tt class="py-op">(</tt><tt id="link-16" class="py-name"><a title="Bio.dbdefs.interpro.interpro_ebi_cgi" class="py-name" href="#" onclick="return doclink('link-16', 'interpro_ebi_cgi', 'link-6');">interpro_ebi_cgi</a></tt><tt class="py-op">)</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> </tt><script type="text/javascript">
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