<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.builders.SeqRecord.sequence</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.builders-module.html">Package builders</a> :: <a href="Bio.builders.SeqRecord-module.html">Package SeqRecord</a> :: Module sequence </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.builders.SeqRecord.sequence-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module sequence</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.builders.SeqRecord.sequence-pysrc.html">source code</a></span></p> <!-- ==================== CLASSES ==================== --> <a 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class="summary-name">make_builder</a> </td> </tr> </table> <!-- ==================== FUNCTIONS ==================== --> <a name="section-Functions"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Functions</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Functions" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="convert_std_feature"></a><span class="summary-sig-name">convert_std_feature</span>(<span class="summary-sig-arg">feature</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.SeqRecord.sequence-pysrc.html#convert_std_feature">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.builders.SeqRecord.sequence-module.html#alphabet_table" class="summary-name">alphabet_table</a> = <code title="{'dna': DNAAlphabet(), 'iupac-ambiguous-dna': IUPACAmbiguousDNA(), 'iupac-ambiguous-rna': IUPACAmbiguousRNA(), 'iupac-dna': IUPACUnambiguousDNA(), 'iupac-extended-protein': ExtendedIUPACProtein(), 'iupac-protein': IUPACProtein(), 'iupac-rna': IUPACUnambiguousRNA(), 'protein': ProteinAlphabet(), ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">dna</code><code class="variable-quote">'</code><code class="variable-op">: </code>DNAAlphabet()<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">iupac-ambiguous-dna</code><code class="variable-quote">'</code><code class="variable-op">:</code><code class="variable-ellipsis">...</code></code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="alphabet_table"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">alphabet_table</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">dna</code><code class="variable-quote">'</code><code class="variable-op">: </code>DNAAlphabet()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-ambiguous-dna</code><code class="variable-quote">'</code><code class="variable-op">: </code>IUPACAmbiguousDNA()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-ambiguous-rna</code><code class="variable-quote">'</code><code class="variable-op">: </code>IUPACAmbiguousRNA()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-dna</code><code class="variable-quote">'</code><code class="variable-op">: </code>IUPACUnambiguousDNA()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-extended-protein</code><code class="variable-quote">'</code><code class="variable-op">: </code>ExtendedIUPACProtein()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-protein</code><code class="variable-quote">'</code><code class="variable-op">: </code>IUPACProtein()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">iupac-rna</code><code class="variable-quote">'</code><code class="variable-op">: </code>IUPACUnambiguousRNA()<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">protein</code><code class="variable-quote">'</code><code class="variable-op">: </code>ProteinAlphabet()<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a 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