<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.builders.Search.search.BuildSearch</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.builders-module.html">Package builders</a> :: <a href="Bio.builders.Search-module.html">Package Search</a> :: <a href="Bio.builders.Search.search-module.html">Module search</a> :: Class BuildSearch </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.builders.Search.search.BuildSearch-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class BuildSearch</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch">source code</a></span></p> <pre class="base-tree"> xml.sax.handler.ContentHandler --+ | <a href="Martel.Dispatch.DispatchHandler-class.html">Martel.Dispatch.DispatchHandler</a> --+ | <a href="Martel.Dispatch.Dispatcher-class.html">Martel.Dispatch.Dispatcher</a> --+ | <strong class="uidshort">BuildSearch</strong> </pre> <hr /> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.builders.Search.search.BuildSearch-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_"></a><span class="summary-sig-name">start_</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>, <span class="summary-sig-arg">attrs</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.start_">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_"></a><span class="summary-sig-name">end_</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.end_">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_hit"></a><span class="summary-sig-name">start_hit</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>, <span class="summary-sig-arg">attrs</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.start_hit">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_hit"></a><span class="summary-sig-name">end_hit</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.end_hit">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_hsp"></a><span class="summary-sig-name">add_hsp</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">hsp_values</span>, <span class="summary-sig-arg">hsp_handler</span>, <span class="summary-sig-arg">strands</span>, <span class="summary-sig-arg">frames</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.add_hsp">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_table"></a><span class="summary-sig-name">add_table</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">table</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.add_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_header"></a><span class="summary-sig-name">add_header</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">info</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.add_header">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_stats"></a><span class="summary-sig-name">add_stats</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">parameters</span>, <span class="summary-sig-arg">statistics</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.add_stats">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_hit_description"></a><span class="summary-sig-name">end_hit_description</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.end_hit_description">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_hit_description_block"></a><span class="summary-sig-name">end_hit_description_block</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.end_hit_description_block">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_hit_length"></a><span class="summary-sig-name">end_hit_length</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.end_hit_length">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_hit_description"></a><span class="summary-sig-name">start_hit_description</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>, <span class="summary-sig-arg">attrs</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.start_hit_description">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_hit_description_block"></a><span class="summary-sig-name">start_hit_description_block</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>, <span class="summary-sig-arg">attrs</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.start_hit_description_block">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_hit_length"></a><span class="summary-sig-name">start_hit_length</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tag</span>, <span class="summary-sig-arg">attrs</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.start_hit_length">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Martel.Dispatch.Dispatcher-class.html">Martel.Dispatch.Dispatcher</a></code></b>: <code><a href="Martel.Dispatch.Dispatcher-class.html#acquire">acquire</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#characters">characters</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#endDocument">endDocument</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#endElement">endElement</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#get_characters">get_characters</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#save_characters">save_characters</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#startDocument">startDocument</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#startElement">startElement</a></code>, <code><a href="Martel.Dispatch.Dispatcher-class.html#uses_tags">uses_tags</a></code> </p> <p class="indent-wrapped-lines"><b>Inherited from <code>xml.sax.handler.ContentHandler</code></b>: <code>endElementNS</code>, <code>endPrefixMapping</code>, <code>ignorableWhitespace</code>, <code>processingInstruction</code>, <code>setDocumentLocator</code>, <code>skippedEntity</code>, <code>startElementNS</code>, <code>startPrefixMapping</code> </p> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Martel.Dispatch.DispatchHandler-class.html">Martel.Dispatch.DispatchHandler</a></code></b>: <code><a href="Martel.Dispatch.DispatchHandler-class.html#get_supported_features">get_supported_features</a></code>, <code><a href="Martel.Dispatch.DispatchHandler-class.html#setCharacterSaver">setCharacterSaver</a></code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__init__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Constructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.builders.Search.search-pysrc.html#BuildSearch.__init__">source code</a></span> </td> </tr></table> <dl class="fields"> <dt>Overrides: <a href="Martel.Dispatch.DispatchHandler-class.html#__init__">Martel.Dispatch.DispatchHandler.__init__</a> </dt> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:39 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>