Sophie

Sophie

distrib > Mandriva > 2008.1 > x86_64 > by-pkgid > 763d6289e1351f2d34257ce697a3ccb7 > files > 1581

biopython-doc-1.47-2mdv2008.1.x86_64.rpm

<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>Bio.biblio.BiblioCollection</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
  <tr valign="top">
    <td width="100%">
      <span class="breadcrumbs">
        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        <a href="Bio.biblio-module.html">Module&nbsp;biblio</a> ::
        Class&nbsp;BiblioCollection
      </span>
    </td>
    <td>
      <table cellpadding="0" cellspacing="0">
        <!-- hide/show private -->
        <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span></td></tr>
        <tr><td align="right"><span class="options"
            >[<a href="frames.html" target="_top">frames</a
            >]&nbsp;|&nbsp;<a href="Bio.biblio.BiblioCollection-class.html"
            target="_top">no&nbsp;frames</a>]</span></td></tr>
      </table>
    </td>
  </tr>
</table>
<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class BiblioCollection</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection">source&nbsp;code</a></span></p>
<p>this class attempts to hide the concept of a collection id from users.
  each find action's results are grouped in the server under a unique 
  collection id. this id could be used in subsequent calls to refine its 
  content more by entering more specific search criteria. it can also 
  return a new collection by using the subcollection method. each 
  collection has its own current collection id as returned by the SOAP 
  server by using the lower level Biblio class's services and it takes care
  of freeing this collection in the server upon destruction.</p>

<!-- ==================== INSTANCE METHODS ==================== -->
<a name="section-InstanceMethods"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td colspan="2" class="table-header">
    <table border="0" cellpadding="0" cellspacing="0" width="100%">
      <tr valign="top">
        <td align="left"><span class="table-header">Instance Methods</span></td>
        <td align="right" valign="top"
         ><span class="options">[<a href="#section-InstanceMethods"
         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
      </tr>
    </table>
  </td>
</tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">biblio</span>,
        <span class="summary-sig-arg">cid</span>=<span class="summary-sig-default">-1</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.__init__">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="__del__"></a><span class="summary-sig-name">__del__</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.__del__">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="get_collection_id"></a><span class="summary-sig-name">get_collection_id</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.get_collection_id">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="get_count"></a><span class="summary-sig-name">get_count</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.get_count">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="refine"></a><span class="summary-sig-name">refine</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">keywords</span>,
        <span class="summary-sig-arg">attrs</span>,
        <span class="summary-sig-arg">criteria</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.refine">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="subcollection"></a><span class="summary-sig-name">subcollection</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">keywords</span>,
        <span class="summary-sig-arg">attrs</span>,
        <span class="summary-sig-arg">criteria</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.subcollection">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="get_all_ids"></a><span class="summary-sig-name">get_all_ids</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.get_all_ids">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="get_all"></a><span class="summary-sig-name">get_all</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.get_all">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="exists"></a><span class="summary-sig-name">exists</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.exists">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
      <table width="100%" cellpadding="0" cellspacing="0" border="0">
        <tr>
          <td><span class="summary-sig"><a name="destroy"></a><span class="summary-sig-name">destroy</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.biblio-pysrc.html#BiblioCollection.destroy">source&nbsp;code</a></span>
            
          </td>
        </tr>
      </table>
      
    </td>
  </tr>
</table>
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
  <tr>
    <td align="left" class="footer">
    Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:39 2008
    </td>
    <td align="right" class="footer">
      <a target="mainFrame" href="http://epydoc.sourceforge.net"
        >http://epydoc.sourceforge.net</a>
    </td>
  </tr>
</table>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>