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Module Translate
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<h1 class="epydoc">Source Code for <a href="Bio.Translate-module.html">Module Bio.Translate</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">string</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Package Bio.Alphabet=Bio.Alphabet-module.html,Class Bio.Alphabet.Alphabet=Bio.Alphabet.Alphabet-class.html"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-1', 'Alphabet', 'link-1');">Alphabet</a></tt><tt class="py-op">,</tt> <tt id="link-2" class="py-name" targets="Module Bio.Seq=Bio.Seq-module.html,Class Bio.Seq.Seq=Bio.Seq.Seq-class.html,Class Martel.Expression.Seq=Martel.Expression.Seq-class.html,Function Martel.Seq()=Martel-module.html#Seq"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-2', 'Seq', 'link-2');">Seq</a></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-3', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Package Bio.Data=Bio.Data-module.html"><a title="Bio.Data" class="py-name" href="#" onclick="return doclink('link-4', 'Data', 'link-4');">Data</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Module Bio.Data.CodonTable=Bio.Data.CodonTable-module.html,Class Bio.Data.CodonTable.CodonTable=Bio.Data.CodonTable.CodonTable-class.html"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-5', 'CodonTable', 'link-5');">CodonTable</a></tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"> </tt>
<a name="Translator"></a><div id="Translator-def"><a name="L5"></a><tt class="py-lineno"> 5</tt> <a class="py-toggle" href="#" id="Translator-toggle" onclick="return toggle('Translator');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html">Translator</a><tt class="py-op">:</tt> </tt>
</div><div id="Translator-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Translator-expanded"><a name="Translator.__init__"></a><div id="Translator.__init__-def"><a name="L6"></a><tt class="py-lineno"> 6</tt> <a class="py-toggle" href="#" id="Translator.__init__-toggle" onclick="return toggle('Translator.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">table</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Translator.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator.__init__-expanded"><a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Variable Bio.CDD.cdd_format.table=Bio.CDD.cdd_format-module.html#table,Variable Bio.expressions.blast.ncbiblast.table=Bio.expressions.blast.ncbiblast-module.html#table"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-6', 'table', 'link-6');">table</a></tt> <tt class="py-op">=</tt> <tt id="link-7" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-7', 'table', 'link-6');">table</a></tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_encoded</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
</div><a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
<a name="Translator.__str__"></a><div id="Translator.__str__-def"><a name="L10"></a><tt class="py-lineno"> 10</tt> <a class="py-toggle" href="#" id="Translator.__str__-toggle" onclick="return toggle('Translator.__str__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#__str__">__str__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> </tt>
</div><div id="Translator.__str__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator.__str__-expanded"><a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">"Translator object\n"</tt> <tt class="py-op">+</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-8', 'table', 'link-6');">table</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"> </tt>
<a name="Translator.translate"></a><div id="Translator.translate-def"><a name="L13"></a><tt class="py-lineno"> 13</tt> <a class="py-toggle" href="#" id="Translator.translate-toggle" onclick="return toggle('Translator.translate');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#translate">translate</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seq</tt><tt class="py-op">,</tt> <tt class="py-param">stop_symbol</tt> <tt class="py-op">=</tt> <tt class="py-string">"*"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Translator.translate-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator.translate-expanded"><a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> <tt class="py-comment">#Allow different instances of the same class to be used:</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">assert</tt> <tt id="link-9" class="py-name" targets="Method Bio.GFF.Feature.seq()=Bio.GFF.Feature-class.html#seq,Method Bio.GFF.FeatureAggregate.seq()=Bio.GFF.FeatureAggregate-class.html#seq,Variable BioSQL.BioSeq.DBSeqRecord.seq=BioSQL.BioSeq.DBSeqRecord-class.html#seq"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-9', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable Bio.Prosite.Pattern.Prosite.alphabet=Bio.Prosite.Pattern.Prosite-class.html#alphabet,Function Bio.Std.alphabet()=Bio.Std-module.html#alphabet"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-10', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt> <tt class="py-op">==</tt> \ </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-11', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.nucleotide_alphabet=Bio.Data.CodonTable.CodonTable-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTable-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTableDNA-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTableRNA-class.html#nucleotide_alphabet"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-12', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">,</tt> \ </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-string">"cannot translate from given alphabet (have %s, need %s)"</tt> <tt class="py-op">%</tt>\ </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-13" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-13', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-14', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-15', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-16', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">)</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt id="link-17" class="py-name" targets="Variable Martel.test.test_swissprot38.s=Martel.test.test_swissprot38-module.html#s"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-17', 's', 'link-17');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-18" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-18', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable BioSQL.BioSeq.DBSeq.data=BioSQL.BioSeq.DBSeq-class.html#data"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-19');">data</a></tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt id="link-20" class="py-name" targets="Variable Bio.Alphabet.Alphabet.letters=Bio.Alphabet.Alphabet-class.html#letters,Variable Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters=Bio.Alphabet.IUPAC.ExtendedIUPACDNA-class.html#letters,Variable Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters=Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html#letters,Variable Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters=Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html#letters,Variable Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters=Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html#letters,Variable Bio.Alphabet.IUPAC.IUPACProtein.letters=Bio.Alphabet.IUPAC.IUPACProtein-class.html#letters,Variable Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters=Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html#letters,Variable Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters=Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html#letters,Variable Bio.Alphabet.Reduced.HPModel.letters=Bio.Alphabet.Reduced.HPModel-class.html#letters,Variable Bio.Alphabet.Reduced.Murphy10.letters=Bio.Alphabet.Reduced.Murphy10-class.html#letters,Variable Bio.Alphabet.Reduced.Murphy15.letters=Bio.Alphabet.Reduced.Murphy15-class.html#letters,Variable Bio.Alphabet.Reduced.Murphy4.letters=Bio.Alphabet.Reduced.Murphy4-class.html#letters,Variable Bio.Alphabet.Reduced.Murphy8.letters=Bio.Alphabet.Reduced.Murphy8-class.html#letters,Variable Bio.Alphabet.Reduced.PC5.letters=Bio.Alphabet.Reduced.PC5-class.html#letters,Variable Bio.Alphabet.SecondaryStructure.letters=Bio.Alphabet.SecondaryStructure-class.html#letters,Variable Bio.Alphabet.SingleLetterAlphabet.letters=Bio.Alphabet.SingleLetterAlphabet-class.html#letters,Variable Bio.Alphabet.ThreeLetterProtein.letters=Bio.Alphabet.ThreeLetterProtein-class.html#letters,Variable Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters=Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#letters,Variable Bio.SeqUtils.ProteinX.letters=Bio.SeqUtils.ProteinX-class.html#letters"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-20', 'letters', 'link-20');">letters</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt id="link-21" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-21', 'append', 'link-21');">append</a></tt> <tt class="py-op">=</tt> <tt id="link-22" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-22', 'letters', 'link-20');">letters</a></tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-23', 'append', 'link-21');">append</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt id="link-24" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-24', 'table', 'link-6');">table</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-25', 'table', 'link-6');">table</a></tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt id="link-26" class="py-name" targets="Method Bio.Crystal.Crystal.get()=Bio.Crystal.Crystal-class.html#get,Method Bio.Data.CodonTable.AmbiguousForwardTable.get()=Bio.Data.CodonTable.AmbiguousForwardTable-class.html#get,Method Bio.EUtils.MultiDict._BaseMultiDict.get()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#get,Method Bio.EUtils.POM.ElementNode.get()=Bio.EUtils.POM.ElementNode-class.html#get,Method Bio.GenBank.NCBIDictionary.get()=Bio.GenBank.NCBIDictionary-class.html#get,Method Bio.Mindy.BaseDB.DictLookup.get()=Bio.Mindy.BaseDB.DictLookup-class.html#get,Method Bio.Prosite.ExPASyDictionary.get()=Bio.Prosite.ExPASyDictionary-class.html#get,Method Bio.Prosite.Prodoc.ExPASyDictionary.get()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#get,Method Bio.PubMed.Dictionary.get()=Bio.PubMed.Dictionary-class.html#get,Method Bio.Restriction.Restriction.RestrictionBatch.get()=Bio.Restriction.Restriction.RestrictionBatch-class.html#get,Method Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get()=Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#get,Method Bio.SeqUtils.MissingTable.get()=Bio.SeqUtils.MissingTable-class.html#get,Method Bio.SwissProt.SProt.ExPASyDictionary.get()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#get,Method Bio.config.DBRegistry.DBGroup.get()=Bio.config.DBRegistry.DBGroup-class.html#get,Method Bio.config.DBRegistry.DBObject.get()=Bio.config.DBRegistry.DBObject-class.html#get,Method Bio.config.Registry.Registry.get()=Bio.config.Registry.Registry-class.html#get,Method Martel.Parser.MartelAttributeList.get()=Martel.Parser.MartelAttributeList-class.html#get,Method Martel.msre_parse.Tokenizer.get()=Martel.msre_parse.Tokenizer-class.html#get"><a title="Bio.Crystal.Crystal.get
Bio.Data.CodonTable.AmbiguousForwardTable.get
Bio.EUtils.MultiDict._BaseMultiDict.get
Bio.EUtils.POM.ElementNode.get
Bio.GenBank.NCBIDictionary.get
Bio.Mindy.BaseDB.DictLookup.get
Bio.Prosite.ExPASyDictionary.get
Bio.Prosite.Prodoc.ExPASyDictionary.get
Bio.PubMed.Dictionary.get
Bio.Restriction.Restriction.RestrictionBatch.get
Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get
Bio.SeqUtils.MissingTable.get
Bio.SwissProt.SProt.ExPASyDictionary.get
Bio.config.DBRegistry.DBGroup.get
Bio.config.DBRegistry.DBObject.get
Bio.config.Registry.Registry.get
Martel.Parser.MartelAttributeList.get
Martel.msre_parse.Tokenizer.get" class="py-name" href="#" onclick="return doclink('link-26', 'get', 'link-26');">get</a></tt> <tt class="py-op">=</tt> <tt id="link-27" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-27', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.forward_table=Bio.Data.CodonTable.CodonTable-class.html#forward_table"><a title="Bio.Data.CodonTable.CodonTable.forward_table" class="py-name" href="#" onclick="return doclink('link-28', 'forward_table', 'link-28');">forward_table</a></tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="Bio.Crystal.Crystal.get
Bio.Data.CodonTable.AmbiguousForwardTable.get
Bio.EUtils.MultiDict._BaseMultiDict.get
Bio.EUtils.POM.ElementNode.get
Bio.GenBank.NCBIDictionary.get
Bio.Mindy.BaseDB.DictLookup.get
Bio.Prosite.ExPASyDictionary.get
Bio.Prosite.Prodoc.ExPASyDictionary.get
Bio.PubMed.Dictionary.get
Bio.Restriction.Restriction.RestrictionBatch.get
Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get
Bio.SeqUtils.MissingTable.get
Bio.SwissProt.SProt.ExPASyDictionary.get
Bio.config.DBRegistry.DBGroup.get
Bio.config.DBRegistry.DBObject.get
Bio.config.Registry.Registry.get
Martel.Parser.MartelAttributeList.get
Martel.msre_parse.Tokenizer.get" class="py-name" href="#" onclick="return doclink('link-29', 'get', 'link-26');">get</a></tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-30" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-30', 'seq', 'link-9');">seq</a></tt><tt class="py-op">)</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-31" class="py-name" targets="Variable Bio.PDB.Polypeptide.i=Bio.PDB.Polypeptide-module.html#i"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-31', 'i', 'link-31');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">n</tt><tt class="py-op">-</tt><tt class="py-name">n</tt><tt class="py-op">%</tt><tt class="py-number">3</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt id="link-32" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-32', 'append', 'link-21');">append</a></tt><tt class="py-op">(</tt><tt id="link-33" class="py-name"><a title="Bio.Crystal.Crystal.get
Bio.Data.CodonTable.AmbiguousForwardTable.get
Bio.EUtils.MultiDict._BaseMultiDict.get
Bio.EUtils.POM.ElementNode.get
Bio.GenBank.NCBIDictionary.get
Bio.Mindy.BaseDB.DictLookup.get
Bio.Prosite.ExPASyDictionary.get
Bio.Prosite.Prodoc.ExPASyDictionary.get
Bio.PubMed.Dictionary.get
Bio.Restriction.Restriction.RestrictionBatch.get
Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get
Bio.SeqUtils.MissingTable.get
Bio.SwissProt.SProt.ExPASyDictionary.get
Bio.config.DBRegistry.DBGroup.get
Bio.config.DBRegistry.DBObject.get
Bio.config.Registry.Registry.get
Martel.Parser.MartelAttributeList.get
Martel.msre_parse.Tokenizer.get" class="py-name" href="#" onclick="return doclink('link-33', 'get', 'link-26');">get</a></tt><tt class="py-op">(</tt><tt id="link-34" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-34', 's', 'link-17');">s</a></tt><tt class="py-op">[</tt><tt id="link-35" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-35', 'i', 'link-31');">i</a></tt><tt class="py-op">:</tt><tt id="link-36" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-36', 'i', 'link-31');">i</a></tt><tt class="py-op">+</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">stop_symbol</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-comment"># return with the correct alphabet encoding (cache the encoding)</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt id="link-37" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-37', 'alphabet', 'link-10');">alphabet</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_encoded</tt><tt class="py-op">[</tt><tt class="py-name">stop_symbol</tt><tt class="py-op">]</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-38', 'alphabet', 'link-10');">alphabet</a></tt> <tt class="py-op">=</tt> <tt id="link-39" class="py-name"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-39', 'Alphabet', 'link-1');">Alphabet</a></tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Class Bio.Alphabet.HasStopCodon=Bio.Alphabet.HasStopCodon-class.html"><a title="Bio.Alphabet.HasStopCodon" class="py-name" href="#" onclick="return doclink('link-40', 'HasStopCodon', 'link-40');">HasStopCodon</a></tt><tt class="py-op">(</tt><tt id="link-41" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-41', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.protein_alphabet=Bio.Data.CodonTable.CodonTable-class.html#protein_alphabet,Variable Bio.Data.CodonTable.NCBICodonTable.protein_alphabet=Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-42', 'protein_alphabet', 'link-42');">protein_alphabet</a></tt><tt class="py-op">)</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_encoded</tt><tt class="py-op">[</tt><tt class="py-name">stop_symbol</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-43" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-43', 'alphabet', 'link-10');">alphabet</a></tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-44" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-44', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-45', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt id="link-46" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-46', 'letters', 'link-20');">letters</a></tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-47" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-47', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
<a name="Translator.translate_to_stop"></a><div id="Translator.translate_to_stop-def"><a name="L37"></a><tt class="py-lineno"> 37</tt> <a class="py-toggle" href="#" id="Translator.translate_to_stop-toggle" onclick="return toggle('Translator.translate_to_stop');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#translate_to_stop">translate_to_stop</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seq</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Translator.translate_to_stop-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator.translate_to_stop-expanded"><a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-comment"># This doesn't have a stop encoding</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-comment">#Allow different instances of the same class to be used:</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">assert</tt> <tt id="link-48" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-48', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-49', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt> <tt class="py-op">==</tt> \ </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-50', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-51', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">,</tt> \ </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-string">"cannot translate from given alphabet (have %s, need %s)"</tt> <tt class="py-op">%</tt>\ </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-52" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-52', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-53', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-54', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-55', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">)</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt id="link-56" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-56', 's', 'link-17');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-57" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-57', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-58', 'data', 'link-19');">data</a></tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt id="link-59" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-59', 'letters', 'link-20');">letters</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-60" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-60', 'append', 'link-21');">append</a></tt> <tt class="py-op">=</tt> <tt id="link-61" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-61', 'letters', 'link-20');">letters</a></tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-62', 'append', 'link-21');">append</a></tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt id="link-63" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-63', 'table', 'link-6');">table</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-64', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.forward_table" class="py-name" href="#" onclick="return doclink('link-65', 'forward_table', 'link-28');">forward_table</a></tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-66" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-66', 'seq', 'link-9');">seq</a></tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-67" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-67', 'i', 'link-31');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">n</tt><tt class="py-op">-</tt><tt class="py-name">n</tt><tt class="py-op">%</tt><tt class="py-number">3</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt id="link-68" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-68', 'append', 'link-21');">append</a></tt><tt class="py-op">(</tt><tt id="link-69" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-69', 'table', 'link-6');">table</a></tt><tt class="py-op">[</tt><tt id="link-70" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-70', 's', 'link-17');">s</a></tt><tt class="py-op">[</tt><tt id="link-71" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-71', 'i', 'link-31');">i</a></tt><tt class="py-op">:</tt><tt id="link-72" class="py-name"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-72', 'i', 'link-31');">i</a></tt><tt class="py-op">+</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-comment"># Stop at the first codon failure</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">pass</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-73" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-73', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-74', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt id="link-75" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-75', 'letters', 'link-20');">letters</a></tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-76', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-77', 'protein_alphabet', 'link-42');">protein_alphabet</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> </tt>
<a name="Translator.back_translate"></a><div id="Translator.back_translate-def"><a name="L58"></a><tt class="py-lineno"> 58</tt> <a class="py-toggle" href="#" id="Translator.back_translate-toggle" onclick="return toggle('Translator.back_translate');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#back_translate">back_translate</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seq</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Translator.back_translate-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator.back_translate-expanded"><a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-comment"># includes the stop codon</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt id="link-78" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-78', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-79', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">,</tt> <tt id="link-80" class="py-name"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-80', 'Alphabet', 'link-1');">Alphabet</a></tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="Bio.Alphabet.HasStopCodon" class="py-name" href="#" onclick="return doclink('link-81', 'HasStopCodon', 'link-40');">HasStopCodon</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name" targets="Method Bio.Translate.Translator._back_translate_no_stop()=Bio.Translate.Translator-class.html#_back_translate_no_stop"><a title="Bio.Translate.Translator._back_translate_no_stop" class="py-name" href="#" onclick="return doclink('link-82', '_back_translate_no_stop', 'link-82');">_back_translate_no_stop</a></tt><tt class="py-op">(</tt><tt id="link-83" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-83', 'seq', 'link-9');">seq</a></tt><tt class="py-op">)</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-84" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-84', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-85', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-86', 'alphabet', 'link-10');">alphabet</a></tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-87', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-88', 'protein_alphabet', 'link-42');">protein_alphabet</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">"cannot back translate from the given alphabet (%s)"</tt> <tt class="py-op">%</tt> \ </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt id="link-89" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-89', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-90', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-91', 'alphabet', 'link-10');">alphabet</a></tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt id="link-92" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-92', 's', 'link-17');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-93" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-93', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-94', 'data', 'link-19');">data</a></tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-name">letter</tt> <tt class="py-op">=</tt> <tt id="link-95" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-95', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-96', 'alphabet', 'link-10');">alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">stop_symbol</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt id="link-97" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-97', 'letters', 'link-20');">letters</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt id="link-98" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-98', 'append', 'link-21');">append</a></tt> <tt class="py-op">=</tt> <tt id="link-99" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-99', 'letters', 'link-20');">letters</a></tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-100', 'append', 'link-21');">append</a></tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt id="link-101" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-101', 'table', 'link-6');">table</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-102', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.back_table=Bio.Data.CodonTable.CodonTable-class.html#back_table"><a title="Bio.Data.CodonTable.CodonTable.back_table" class="py-name" href="#" onclick="return doclink('link-103', 'back_table', 'link-103');">back_table</a></tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">c</tt> <tt class="py-keyword">in</tt> <tt id="link-104" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-104', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-105', 'data', 'link-19');">data</a></tt><tt class="py-op">:</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">c</tt> <tt class="py-op">==</tt> <tt class="py-name">letter</tt><tt class="py-op">:</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt id="link-106" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-106', 'append', 'link-21');">append</a></tt><tt class="py-op">(</tt><tt id="link-107" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-107', 'table', 'link-6');">table</a></tt><tt class="py-op">[</tt><tt class="py-name">None</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt id="link-108" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-108', 'append', 'link-21');">append</a></tt><tt class="py-op">(</tt><tt id="link-109" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-109', 'table', 'link-6');">table</a></tt><tt class="py-op">[</tt><tt class="py-name">c</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-110" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-110', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">.</tt><tt id="link-111" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-111', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt id="link-112" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-112', 'letters', 'link-20');">letters</a></tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-113', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-114', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> </tt>
<a name="Translator._back_translate_no_stop"></a><div id="Translator._back_translate_no_stop-def"><a name="L78"></a><tt class="py-lineno"> 78</tt> <a class="py-toggle" href="#" id="Translator._back_translate_no_stop-toggle" onclick="return toggle('Translator._back_translate_no_stop');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Translate.Translator-class.html#_back_translate_no_stop">_back_translate_no_stop</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">seq</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Translator._back_translate_no_stop-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Translator._back_translate_no_stop-expanded"><a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-comment"># does not allow a stop codon</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">assert</tt> <tt id="link-115" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-115', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-116', 'alphabet', 'link-10');">alphabet</a></tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-117', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-118', 'protein_alphabet', 'link-42');">protein_alphabet</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-string">"cannot back translate from the given alphabet (%s)"</tt> <tt class="py-op">%</tt> \ </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-119" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-119', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="Bio.Prosite.Pattern.Prosite.alphabet
Bio.Std.alphabet" class="py-name" href="#" onclick="return doclink('link-120', 'alphabet', 'link-10');">alphabet</a></tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt id="link-121" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-121', 's', 'link-17');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-122" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-122', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-123', 'data', 'link-19');">data</a></tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt id="link-124" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-124', 'letters', 'link-20');">letters</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt id="link-125" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-125', 'append', 'link-21');">append</a></tt> <tt class="py-op">=</tt> <tt id="link-126" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-126', 'letters', 'link-20');">letters</a></tt><tt class="py-op">.</tt><tt id="link-127" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-127', 'append', 'link-21');">append</a></tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt id="link-128" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-128', 'table', 'link-6');">table</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-129" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-129', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.back_table" class="py-name" href="#" onclick="return doclink('link-130', 'back_table', 'link-103');">back_table</a></tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">c</tt> <tt class="py-keyword">in</tt> <tt id="link-131" class="py-name"><a title="Bio.GFF.Feature.seq
Bio.GFF.FeatureAggregate.seq
BioSQL.BioSeq.DBSeqRecord.seq" class="py-name" href="#" onclick="return doclink('link-131', 'seq', 'link-9');">seq</a></tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-132', 'data', 'link-19');">data</a></tt><tt class="py-op">:</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt id="link-133" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-133', 'append', 'link-21');">append</a></tt><tt class="py-op">(</tt><tt id="link-134" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-134', 'table', 'link-6');">table</a></tt><tt class="py-op">[</tt><tt class="py-name">c</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-135" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-135', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="Bio.Seq
Bio.Seq.Seq
Martel.Expression.Seq
Martel.Seq" class="py-name" href="#" onclick="return doclink('link-136', 'Seq', 'link-2');">Seq</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt id="link-137" class="py-name"><a title="Bio.Alphabet.Alphabet.letters
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters
Bio.Alphabet.IUPAC.IUPACProtein.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters
Bio.Alphabet.Reduced.HPModel.letters
Bio.Alphabet.Reduced.Murphy10.letters
Bio.Alphabet.Reduced.Murphy15.letters
Bio.Alphabet.Reduced.Murphy4.letters
Bio.Alphabet.Reduced.Murphy8.letters
Bio.Alphabet.Reduced.PC5.letters
Bio.Alphabet.SecondaryStructure.letters
Bio.Alphabet.SingleLetterAlphabet.letters
Bio.Alphabet.ThreeLetterProtein.letters
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters
Bio.SeqUtils.ProteinX.letters" class="py-name" href="#" onclick="return doclink('link-137', 'letters', 'link-20');">letters</a></tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-138', 'table', 'link-6');">table</a></tt><tt class="py-op">.</tt><tt id="link-139" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-139', 'nucleotide_alphabet', 'link-12');">nucleotide_alphabet</a></tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt id="link-140" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_dna_by_name=Bio.Data.CodonTable-module.html#unambiguous_dna_by_name,Variable Bio.Translate.unambiguous_dna_by_name=Bio.Translate-module.html#unambiguous_dna_by_name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Translate.unambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-140', 'unambiguous_dna_by_name', 'link-140');">unambiguous_dna_by_name</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-141" class="py-name" targets="Variable Bio.Translate.key=Bio.Translate-module.html#key"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-141', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-142" class="py-name" targets="Variable Bio.Translate.value=Bio.Translate-module.html#value"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-142', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-143" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-143', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Translate.unambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-144', 'unambiguous_dna_by_name', 'link-140');">unambiguous_dna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-145" class="py-name" targets="Method Bio.Crystal.Crystal.items()=Bio.Crystal.Crystal-class.html#items,Method Bio.EUtils.MultiDict._BaseMultiDict.items()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#items,Variable Bio.Entrez.SerialSet.items=Bio.Entrez.SerialSet-module.html#items,Method Bio.GenBank.NCBIDictionary.items()=Bio.GenBank.NCBIDictionary-class.html#items,Method Bio.Mindy.BaseDB.DictLookup.items()=Bio.Mindy.BaseDB.DictLookup-class.html#items,Method Bio.Prosite.ExPASyDictionary.items()=Bio.Prosite.ExPASyDictionary-class.html#items,Method Bio.Prosite.Prodoc.ExPASyDictionary.items()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#items,Method Bio.PubMed.Dictionary.items()=Bio.PubMed.Dictionary-class.html#items,Method Bio.SwissProt.SProt.ExPASyDictionary.items()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#items,Method Bio.config.Registry.Registry.items()=Bio.config.Registry.Registry-class.html#items,Function Bio.listfns.items()=Bio.listfns-module.html#items,Method BioSQL.BioSeqDatabase.BioSeqDatabase.items()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#items,Method BioSQL.BioSeqDatabase.DBServer.items()=BioSQL.BioSeqDatabase.DBServer-class.html#items,Method Martel.Parser.MartelAttributeList.items()=Martel.Parser.MartelAttributeList-class.html#items"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-145', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt id="link-146" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Translate.unambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-146', 'unambiguous_dna_by_name', 'link-140');">unambiguous_dna_by_name</a></tt><tt class="py-op">[</tt><tt id="link-147" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-147', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-148" class="py-name" targets="Class Bio.Translate.Translator=Bio.Translate.Translator-class.html"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-148', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-149" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-149', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt id="link-150" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_dna_by_id=Bio.Data.CodonTable-module.html#unambiguous_dna_by_id,Variable Bio.Translate.unambiguous_dna_by_id=Bio.Translate-module.html#unambiguous_dna_by_id"><a title="Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Translate.unambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-150', 'unambiguous_dna_by_id', 'link-150');">unambiguous_dna_by_id</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-151" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-151', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-152" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-152', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-153" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-153', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-154" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Translate.unambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-154', 'unambiguous_dna_by_id', 'link-150');">unambiguous_dna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-155', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt id="link-156" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Translate.unambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-156', 'unambiguous_dna_by_id', 'link-150');">unambiguous_dna_by_id</a></tt><tt class="py-op">[</tt><tt id="link-157" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-157', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-158" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-158', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-159" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-159', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt id="link-160" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_rna_by_name=Bio.Data.CodonTable-module.html#unambiguous_rna_by_name,Variable Bio.Translate.unambiguous_rna_by_name=Bio.Translate-module.html#unambiguous_rna_by_name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Translate.unambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-160', 'unambiguous_rna_by_name', 'link-160');">unambiguous_rna_by_name</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-161" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-161', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-162" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-162', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-163" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-163', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-164" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Translate.unambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-164', 'unambiguous_rna_by_name', 'link-160');">unambiguous_rna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-165', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt id="link-166" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Translate.unambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-166', 'unambiguous_rna_by_name', 'link-160');">unambiguous_rna_by_name</a></tt><tt class="py-op">[</tt><tt id="link-167" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-167', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-168" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-168', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-169" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-169', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt id="link-170" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_rna_by_id=Bio.Data.CodonTable-module.html#unambiguous_rna_by_id,Variable Bio.Translate.unambiguous_rna_by_id=Bio.Translate-module.html#unambiguous_rna_by_id"><a title="Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Translate.unambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-170', 'unambiguous_rna_by_id', 'link-170');">unambiguous_rna_by_id</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-171" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-171', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-172" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-172', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-173" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-173', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Translate.unambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-174', 'unambiguous_rna_by_id', 'link-170');">unambiguous_rna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-175', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-176" class="py-name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Translate.unambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-176', 'unambiguous_rna_by_id', 'link-170');">unambiguous_rna_by_id</a></tt><tt class="py-op">[</tt><tt id="link-177" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-177', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-178" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-178', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-179" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-179', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt class="py-comment"># XXX Ambiguous - can be done the same except for stop codons!</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-180" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_dna_by_name=Bio.Data.CodonTable-module.html#ambiguous_dna_by_name,Variable Bio.Translate.ambiguous_dna_by_name=Bio.Translate-module.html#ambiguous_dna_by_name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-180', 'ambiguous_dna_by_name', 'link-180');">ambiguous_dna_by_name</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-181" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-181', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-182" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-182', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-183" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-183', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-184', 'ambiguous_dna_by_name', 'link-180');">ambiguous_dna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-185', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-186" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-186', 'ambiguous_dna_by_name', 'link-180');">ambiguous_dna_by_name</a></tt><tt class="py-op">[</tt><tt id="link-187" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-187', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-188" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-188', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-189" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-189', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"><tt id="link-190" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_dna_by_id=Bio.Data.CodonTable-module.html#ambiguous_dna_by_id,Variable Bio.Translate.ambiguous_dna_by_id=Bio.Translate-module.html#ambiguous_dna_by_id"><a title="Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Translate.ambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-190', 'ambiguous_dna_by_id', 'link-190');">ambiguous_dna_by_id</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-191" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-191', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-192" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-192', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-193" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-193', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-194" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Translate.ambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-194', 'ambiguous_dna_by_id', 'link-190');">ambiguous_dna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-195', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-196" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Translate.ambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-196', 'ambiguous_dna_by_id', 'link-190');">ambiguous_dna_by_id</a></tt><tt class="py-op">[</tt><tt id="link-197" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-197', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-198" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-198', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-199" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-199', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"><tt id="link-200" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_rna_by_name=Bio.Data.CodonTable-module.html#ambiguous_rna_by_name,Variable Bio.Translate.ambiguous_rna_by_name=Bio.Translate-module.html#ambiguous_rna_by_name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Translate.ambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-200', 'ambiguous_rna_by_name', 'link-200');">ambiguous_rna_by_name</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-201" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-201', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-202" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-202', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-203" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-203', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Translate.ambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-204', 'ambiguous_rna_by_name', 'link-200');">ambiguous_rna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-205" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-205', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-206" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Translate.ambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-206', 'ambiguous_rna_by_name', 'link-200');">ambiguous_rna_by_name</a></tt><tt class="py-op">[</tt><tt id="link-207" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-207', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-208" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-208', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-209" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-209', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt id="link-210" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_rna_by_id=Bio.Data.CodonTable-module.html#ambiguous_rna_by_id,Variable Bio.Translate.ambiguous_rna_by_id=Bio.Translate-module.html#ambiguous_rna_by_id"><a title="Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Translate.ambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-210', 'ambiguous_rna_by_id', 'link-210');">ambiguous_rna_by_id</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-211" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-211', 'key', 'link-141');">key</a></tt><tt class="py-op">,</tt> <tt id="link-212" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-212', 'value', 'link-142');">value</a></tt> <tt class="py-keyword">in</tt> <tt id="link-213" class="py-name"><a title="Bio.Data.CodonTable
Bio.Data.CodonTable.CodonTable" class="py-name" href="#" onclick="return doclink('link-213', 'CodonTable', 'link-5');">CodonTable</a></tt><tt class="py-op">.</tt><tt id="link-214" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Translate.ambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-214', 'ambiguous_rna_by_id', 'link-210');">ambiguous_rna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-215', 'items', 'link-145');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt id="link-216" class="py-name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Translate.ambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-216', 'ambiguous_rna_by_id', 'link-210');">ambiguous_rna_by_id</a></tt><tt class="py-op">[</tt><tt id="link-217" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-217', 'key', 'link-141');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-218" class="py-name"><a title="Bio.Translate.Translator" class="py-name" href="#" onclick="return doclink('link-218', 'Translator', 'link-148');">Translator</a></tt><tt class="py-op">(</tt><tt id="link-219" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-219', 'value', 'link-142');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> </tt><script type="text/javascript">
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