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<a href="Bio-module.html">Package Bio</a> ::
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Class _Scanner
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class _Scanner</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner">source code</a></span></p>
<p>Scans SwissProt-formatted data.</p>
<p>Tested with: Release 37 Release 38</p>
<!-- ==================== INSTANCE METHODS ==================== -->
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<td><span class="summary-sig"><a href="Bio.SwissProt.SProt._Scanner-class.html#feed" class="summary-sig-name">feed</a>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">handle</span>,
<span class="summary-sig-arg">consumer</span>)</span><br />
Feed in SwissProt data for scanning.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner.feed">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_skip_starstar"></a><span class="summary-sig-name">_skip_starstar</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>)</span><br />
Ignores any lines starting **</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._skip_starstar">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_record"></a><span class="summary-sig-name">_scan_record</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_record">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_line"></a><span class="summary-sig-name">_scan_line</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line_type</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">event_fn</span>,
<span class="summary-sig-arg">exactly_one</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">one_or_more</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">any_number</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">up_to_one</span>=<span class="summary-sig-default">None</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_line">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_id"></a><span class="summary-sig-name">_scan_id</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_id">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_ac"></a><span class="summary-sig-name">_scan_ac</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_ac">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_dt"></a><span class="summary-sig-name">_scan_dt</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_dt">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_de"></a><span class="summary-sig-name">_scan_de</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_de">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_gn"></a><span class="summary-sig-name">_scan_gn</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_gn">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_os"></a><span class="summary-sig-name">_scan_os</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_os">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_og"></a><span class="summary-sig-name">_scan_og</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_og">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_oc"></a><span class="summary-sig-name">_scan_oc</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_oc">source code</a></span>
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<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="_scan_ox"></a><span class="summary-sig-name">_scan_ox</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_ox">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_oh"></a><span class="summary-sig-name">_scan_oh</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_oh">source code</a></span>
</td>
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</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="_scan_reference"></a><span class="summary-sig-name">_scan_reference</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_reference">source code</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="_scan_rn"></a><span class="summary-sig-name">_scan_rn</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rn">source code</a></span>
</td>
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</table>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_rp"></a><span class="summary-sig-name">_scan_rp</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rp">source code</a></span>
</td>
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</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_rc"></a><span class="summary-sig-name">_scan_rc</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rc">source code</a></span>
</td>
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</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_rx"></a><span class="summary-sig-name">_scan_rx</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rx">source code</a></span>
</td>
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</table>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_ra"></a><span class="summary-sig-name">_scan_ra</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_ra">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="_scan_rt"></a><span class="summary-sig-name">_scan_rt</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rt">source code</a></span>
</td>
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</td>
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<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_rl"></a><span class="summary-sig-name">_scan_rl</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_rl">source code</a></span>
</td>
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</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_cc"></a><span class="summary-sig-name">_scan_cc</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_cc">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_dr"></a><span class="summary-sig-name">_scan_dr</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_dr">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_kw"></a><span class="summary-sig-name">_scan_kw</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_kw">source code</a></span>
</td>
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</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_ft"></a><span class="summary-sig-name">_scan_ft</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_ft">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="_scan_pe"></a><span class="summary-sig-name">_scan_pe</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_pe">source code</a></span>
</td>
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</td>
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<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="_scan_sq"></a><span class="summary-sig-name">_scan_sq</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_sq">source code</a></span>
</td>
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</td>
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<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="_scan_sequence_data"></a><span class="summary-sig-name">_scan_sequence_data</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
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<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_sequence_data">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="_scan_terminator"></a><span class="summary-sig-name">_scan_terminator</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">uhandle</span>,
<span class="summary-sig-arg">consumer</span>)</span></td>
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<span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner._scan_terminator">source code</a></span>
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<!-- ==================== CLASS VARIABLES ==================== -->
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<a href="Bio.SwissProt.SProt._Scanner-class.html#_scan_fns" class="summary-name" onclick="show_private();">_scan_fns</a> = <code title="[_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_gn, _scan_os, _scan_og,\
_scan_oc, _scan_ox, _scan_oh, _scan_reference, _scan_cc, _scan_dr, _s\
can_pe, _scan_kw, _scan_ft, _scan_sq, _scan_sequence_data, _scan_termi\
nator]">[_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_gn,<code class="variable-ellipsis">...</code></code>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">feed</span>(<span class="sig-arg">self</span>,
<span class="sig-arg">handle</span>,
<span class="sig-arg">consumer</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.SwissProt.SProt-pysrc.html#_Scanner.feed">source code</a></span>
</td>
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<p>Feed in SwissProt data for scanning. handle is a file-like object
that contains swissprot data. consumer is a Consumer object that will
receive events as the report is scanned.</p>
<dl class="fields">
</dl>
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<h3 class="epydoc">_scan_fns</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
[_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_gn, _scan_os, _scan_og,<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
_scan_oc, _scan_ox, _scan_oh, _scan_reference, _scan_cc, _scan_dr, _s<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
can_pe, _scan_kw, _scan_ft, _scan_sq, _scan_sequence_data, _scan_termi<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
nator]
</pre></td></tr></table>
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