<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Sequencing.Ace._RecordConsumer</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Sequencing-module.html">Package Sequencing</a> :: <a href="Bio.Sequencing.Ace-module.html">Module Ace</a> :: Class _RecordConsumer </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class _RecordConsumer</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer">source code</a></span></p> <pre class="base-tree"> <a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a> --+ | <strong class="uidshort">_RecordConsumer</strong> </pre> <hr /> <p>Reads the ace tags into data records.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="begin_contig"></a><span class="summary-sig-name">begin_contig</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.begin_contig">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="end_contig"></a><span class="summary-sig-name">end_contig</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.end_contig">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="co_header"></a><span class="summary-sig-name">co_header</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.co_header">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="co_data"></a><span class="summary-sig-name">co_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">seq</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.co_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="bq_header"></a><span class="summary-sig-name">bq_header</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.bq_header">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="bq_data"></a><span class="summary-sig-name">bq_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">qual</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.bq_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="af"></a><span class="summary-sig-name">af</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.af">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="bs"></a><span class="summary-sig-name">bs</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.bs">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="rd_header"></a><span class="summary-sig-name">rd_header</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.rd_header">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="rd_data"></a><span class="summary-sig-name">rd_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">seq</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.rd_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="qa"></a><span class="summary-sig-name">qa</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.qa">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="ds"></a><span class="summary-sig-name">ds</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.ds">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="ct_start"></a><span class="summary-sig-name">ct_start</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.ct_start">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="ct_data"></a><span class="summary-sig-name">ct_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">taglines</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.ct_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="rt_start"></a><span class="summary-sig-name">rt_start</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.rt_start">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="rt_data"></a><span class="summary-sig-name">rt_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">taglines</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.rt_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="wa_start"></a><span class="summary-sig-name">wa_start</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.wa_start">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="wa_data"></a><span class="summary-sig-name">wa_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">taglines</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.wa_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="wr_start"></a><span class="summary-sig-name">wr_start</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.wr_start">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="wr_data"></a><span class="summary-sig-name">wr_data</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">taglines</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Sequencing.Ace-pysrc.html#_RecordConsumer.wr_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a></code></b>: <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#__getattr__">__getattr__</a></code> </p> <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a></code></b> (private): <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#_unhandled" onclick="show_private();">_unhandled</a></code>, <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section" onclick="show_private();">_unhandled_section</a></code> </p></div> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> 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