<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.SeqUtils.ProtParamData</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.SeqUtils-module.html">Package SeqUtils</a> :: Module ProtParamData </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.SeqUtils.ProtParamData-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module ProtParamData</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.SeqUtils.ProtParamData-pysrc.html">source code</a></span></p> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#kd" class="summary-name">kd</a> = <code title="{'A': 1.8, 'C': 2.5, 'D': -3.5, 'E': -3.5, 'F': 2.8, 'G': -0.4, 'H': -3.2, 'I': 4.5, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.8<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>2.5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-3.5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>-3.5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>2.8<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">:</code><code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#Flex" class="summary-name">Flex</a> = <code title="{'A': 0.984, 'C': 0.906, 'D': 1.068, 'E': 1.094, 'F': 0.915, 'G': 1.031, 'H': 0.95, 'I': 0.927, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.984<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.906<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.068<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.094<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#hw" class="summary-name">hw</a> = <code title="{'A': -0.5, 'C': -1.0, 'D': 3.0, 'E': 3.0, 'F': -2.5, 'G': 0.0, 'H': -0.5, 'I': -1.8, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>-1.0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>3.0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>3.0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>-2.5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#em" class="summary-name">em</a> = <code title="{'A': 0.815, 'C': 0.394, 'D': 1.283, 'E': 1.445, 'F': 0.695, 'G': 0.714, 'H': 1.18, 'I': 0.603, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.815<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.394<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.283<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.445<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.6<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#ja" class="summary-name">ja</a> = <code title="{'A': 0.28, 'C': 0.97, 'D': -0.52, 'E': -1.01, 'F': 0.46, 'G': 0.43, 'H': -0.31, 'I': 0.6, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.28<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.97<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.52<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>-1.01<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.46<code class="variable-op">,</code><code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.SeqUtils.ProtParamData-module.html#DIWV" class="summary-name">DIWV</a> = <code title="{'A': {'A': 1.0, 'C': 44.94, 'D': -7.49, 'E': 1.0, 'F': 1.0, 'G': 1.0, 'H': -7.49, 'I': 1.0, ..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>44.94<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-7.49<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">:</code><code class="variable-ellipsis">...</code></code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="kd"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">kd</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.8<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>2.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-3.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>-3.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>2.8<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.4<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>-3.2<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>4.5<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="Flex"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">Flex</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.984<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.906<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.068<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.094<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.915<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.031<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.95<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.927<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="hw"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">hw</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>-1.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>3.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>3.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>-2.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.5<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>-1.8<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="em"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">em</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.815<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.394<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.283<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.445<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.695<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.714<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.18<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.603<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="ja"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">ja</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.28<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.97<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.52<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>-1.01<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.46<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.43<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>-0.31<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>0.6<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="DIWV"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">DIWV</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> <code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>44.94<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>-7.49<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>-7.49<code class="variable-op">,</code> <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>1.0<code class="variable-op">,</code> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:25 2008 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