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<a href="Bio-module.html">Package Bio</a> ::
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<a href="Bio.Blast.NCBIStandalone-module.html">Module NCBIStandalone</a> ::
Class _ParametersConsumer
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class _ParametersConsumer</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer">source code</a></span></p>
<dl><dt>Known Subclasses:</dt>
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<ul class="subclass-list">
<li class="private"><a href="Bio.Blast.NCBIStandalone._BlastConsumer-class.html" onclick="show_private();">_BlastConsumer</a></li><li class="private">, <a href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html" onclick="show_private();">_PSIBlastConsumer</a></li> </ul>
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<td><span class="summary-sig"><a name="start_parameters"></a><span class="summary-sig-name">start_parameters</span>(<span class="summary-sig-arg">self</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.start_parameters">source code</a></span>
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<td><span class="summary-sig"><a name="matrix"></a><span class="summary-sig-name">matrix</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.matrix">source code</a></span>
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<td><span class="summary-sig"><a name="gap_penalties"></a><span class="summary-sig-name">gap_penalties</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.gap_penalties">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="num_hits"></a><span class="summary-sig-name">num_hits</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.num_hits">source code</a></span>
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<td><span class="summary-sig"><a name="num_sequences"></a><span class="summary-sig-name">num_sequences</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.num_sequences">source code</a></span>
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<td><span class="summary-sig"><a name="num_extends"></a><span class="summary-sig-name">num_extends</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.num_extends">source code</a></span>
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<td><span class="summary-sig"><a name="num_good_extends"></a><span class="summary-sig-name">num_good_extends</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.num_good_extends">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="num_seqs_better_e"></a><span class="summary-sig-name">num_seqs_better_e</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.num_seqs_better_e">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="hsps_no_gap"></a><span class="summary-sig-name">hsps_no_gap</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.hsps_no_gap">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="hsps_prelim_gapped"></a><span class="summary-sig-name">hsps_prelim_gapped</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.hsps_prelim_gapped">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="hsps_prelim_gapped_attempted"></a><span class="summary-sig-name">hsps_prelim_gapped_attempted</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.hsps_prelim_gapped_attempted">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="hsps_gapped"></a><span class="summary-sig-name">hsps_gapped</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.hsps_gapped">source code</a></span>
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="query_length"></a><span class="summary-sig-name">query_length</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.query_length">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="database_length"></a><span class="summary-sig-name">database_length</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.database_length">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="effective_hsp_length"></a><span class="summary-sig-name">effective_hsp_length</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.effective_hsp_length">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="effective_query_length"></a><span class="summary-sig-name">effective_query_length</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.effective_query_length">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="effective_database_length"></a><span class="summary-sig-name">effective_database_length</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.effective_database_length">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="effective_search_space"></a><span class="summary-sig-name">effective_search_space</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.effective_search_space">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="effective_search_space_used"></a><span class="summary-sig-name">effective_search_space_used</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.effective_search_space_used">source code</a></span>
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
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<tr>
<td><span class="summary-sig"><a name="frameshift"></a><span class="summary-sig-name">frameshift</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.frameshift">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="threshold"></a><span class="summary-sig-name">threshold</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.threshold">source code</a></span>
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<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="window_size"></a><span class="summary-sig-name">window_size</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.window_size">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="dropoff_1st_pass"></a><span class="summary-sig-name">dropoff_1st_pass</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.dropoff_1st_pass">source code</a></span>
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="gap_x_dropoff"></a><span class="summary-sig-name">gap_x_dropoff</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.gap_x_dropoff">source code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
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<td><span class="summary-sig"><a name="gap_x_dropoff_final"></a><span class="summary-sig-name">gap_x_dropoff_final</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.gap_x_dropoff_final">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a name="gap_trigger"></a><span class="summary-sig-name">gap_trigger</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.gap_trigger">source code</a></span>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="blast_cutoff"></a><span class="summary-sig-name">blast_cutoff</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">line</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.blast_cutoff">source code</a></span>
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a name="end_parameters"></a><span class="summary-sig-name">end_parameters</span>(<span class="summary-sig-arg">self</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#_ParametersConsumer.end_parameters">source code</a></span>
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