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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.SCOP-module.html">Package SCOP</a> ::
Class Domain
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class Domain</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.SCOP-pysrc.html#Domain">source code</a></span></p>
<pre class="base-tree">
<a href="Bio.SCOP.Node-class.html">Node</a> --+
|
<strong class="uidshort">Domain</strong>
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<pre class="literalblock">
A SCOP domain. A leaf node in the Scop hierarchy.
sid -- The SCOP domain identifier. e.g. 'd5hbib_'
residues -- A Residue object. It defines the collection
of PDB atoms that make up this domain.
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<td><span class="summary-sig"><a href="Bio.SCOP.Domain-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
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Create a Node in the scop hierarchy.</td>
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<td><span class="summary-sig"><a href="Bio.SCOP.Domain-class.html#__str__" class="summary-sig-name">__str__</a>(<span class="summary-sig-arg">self</span>)</span></td>
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<td><span class="summary-sig"><a href="Bio.SCOP.Domain-class.html#toDesRecord" class="summary-sig-name">toDesRecord</a>(<span class="summary-sig-arg">self</span>)</span><br />
Return a Des.Record</td>
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<td><span class="summary-sig"><a name="toClaRecord"></a><span class="summary-sig-name">toClaRecord</span>(<span class="summary-sig-arg">self</span>)</span><br />
Return a Cla.Record</td>
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<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.SCOP.Node-class.html">Node</a></code></b>:
<code><a href="Bio.SCOP.Node-class.html#getAscendent">getAscendent</a></code>,
<code><a href="Bio.SCOP.Node-class.html#getChildren">getChildren</a></code>,
<code><a href="Bio.SCOP.Node-class.html#getDescendents">getDescendents</a></code>,
<code><a href="Bio.SCOP.Node-class.html#getParent">getParent</a></code>,
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<h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
<span class="sig-arg">scop</span>=<span class="sig-default">None</span>)</span>
<br /><em class="fname">(Constructor)</em>
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<p>Create a Node in the scop hierarchy. If a Scop instance is provided
to the constructor, this will be used to lookup related references using
the SQL methods. If no instance is provided, it is assumed the whole
tree exists and is connected.</p>
<dl class="fields">
<dt>Overrides:
<a href="Bio.SCOP.Node-class.html#__init__">Node.__init__</a>
<dd><em class="note">(inherited documentation)</em></dd>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">__str__</span>(<span class="sig-arg">self</span>)</span>
<br /><em class="fname">(Informal representation operator)</em>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">toDesRecord</span>(<span class="sig-arg">self</span>)</span>
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><span class="codelink"><a href="Bio.SCOP-pysrc.html#Domain.toDesRecord">source code</a></span>
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<p>Return a Des.Record</p>
<dl class="fields">
<dt>Overrides:
<a href="Bio.SCOP.Node-class.html#toDesRecord">Node.toDesRecord</a>
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