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<a href="Bio-module.html">Package Bio</a> ::
Package SCOP
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<!-- ==================== PACKAGE DESCRIPTION ==================== -->
<h1 class="epydoc">Package SCOP</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.SCOP-pysrc.html">source code</a></span></p>
<pre class="literalblock">
SCOP: Structural Classification of Proteins.
The SCOP database aims to provide a manually constructed classification of
all know protein structures into a hierarchy, the main levels of which
are family, superfamily and fold.
* "SCOP":http://scop.mrc-lmb.cam.ac.uk/scop/
* "Introduction":http://scop.mrc-lmb.cam.ac.uk/scop/intro.html
* "SCOP parsable files":http://scop.mrc-lmb.cam.ac.uk/scop/parse/
The Scop object in this module represents the entire SCOP classification. It
can be built from the three SCOP parsable files, modified is so desired, and
converted back to the same file formats. A single SCOP domain (represented
by the Domain class) can be obtained from Scop using the domain's SCOP
identifier (sid).
nodeCodeDict -- A mapping between known 2 letter node codes and a longer
description. The known node types are 'cl' (class), 'cf'
(fold), 'sf' (superfamily), 'fa' (family), 'dm' (domain),
'sp' (species), 'px' (domain). Additional node types may
be added in the future.
This module also provides code to access SCOP over the WWW.
Functions:
search -- Access the main CGI script.
_open -- Internally used function.
</pre>
<!-- ==================== SUBMODULES ==================== -->
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<ul class="nomargin">
<li> <strong class="uidlink"><a href="Bio.SCOP.Cla-module.html">Bio.SCOP.Cla</a></strong>: <em class="summary">Handle the SCOP CLAssification file, which describes SCOP domains.</em> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.Des-module.html">Bio.SCOP.Des</a></strong>: <em class="summary">Handle the SCOP DEScription file.</em> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.Dom-module.html">Bio.SCOP.Dom</a></strong>: <em class="summary">Handle the SCOP DOMain file.</em> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.FileIndex-module.html">Bio.SCOP.FileIndex</a></strong> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.Hie-module.html">Bio.SCOP.Hie</a></strong>: <em class="summary">Handle the SCOP HIErarchy files, which describe the SCOP hierarchy
in terms of SCOP unique identifiers (sunid).</em> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a></strong>: <em class="summary">ASTRAL RAF (Rapid Access Format) Sequence Maps.</em> </li>
<li> <strong class="uidlink">Bio.SCOP.Residues</strong> </li>
<li> <strong class="uidlink"><a href="Bio.SCOP.Residues%27-module.html">Bio.SCOP.Residues'</a></strong> </li>
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<!-- ==================== CLASSES ==================== -->
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<span class="summary-type"> </span>
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<a href="Bio.SCOP.Scop-class.html" class="summary-name">Scop</a><br />
The entire SCOP hierarchy.
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP.Node-class.html" class="summary-name">Node</a><br />
A node in the Scop hierarchy
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP.Domain-class.html" class="summary-name">Domain</a><br />
A SCOP domain.
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP.Astral-class.html" class="summary-name">Astral</a><br />
Abstraction of the ASTRAL database, which has sequences for all the
SCOP domains, as well as clusterings by percent id or evalue.
</td>
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<!-- ==================== FUNCTIONS ==================== -->
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<span class="summary-type"> </span>
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a href="Bio.SCOP-module.html#cmp_sccs" class="summary-sig-name">cmp_sccs</a>(<span class="summary-sig-arg">sccs1</span>,
<span class="summary-sig-arg">sccs2</span>)</span><br />
Order SCOP concise classification strings (sccs).</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SCOP-pysrc.html#cmp_sccs">source code</a></span>
</td>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.SCOP-module.html#parse_domain" class="summary-sig-name">parse_domain</a>(<span class="summary-sig-arg">str</span>)</span><br />
Convert an ASTRAL header string into a Scop domain.</td>
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<span class="codelink"><a href="Bio.SCOP-pysrc.html#parse_domain">source code</a></span>
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<span class="summary-type"> </span>
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<tr>
<td><span class="summary-sig"><a name="_open_scop_file"></a><span class="summary-sig-name">_open_scop_file</span>(<span class="summary-sig-arg">scop_dir_path</span>,
<span class="summary-sig-arg">version</span>,
<span class="summary-sig-arg">filetype</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SCOP-pysrc.html#_open_scop_file">source code</a></span>
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<span class="summary-type"> </span>
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<tr>
<td><span class="summary-sig"><a href="Bio.SCOP-module.html#search" class="summary-sig-name">search</a>(<span class="summary-sig-arg">pdb</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">key</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">sid</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">disp</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">dir</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">loc</span>=<span class="summary-sig-default">None</span>,
<span class="summary-sig-arg">cgi</span>=<span class="summary-sig-default">'http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi'</span>,
<span class="summary-sig-arg">**keywds</span>)</span><br />
Access search.cgi and return a handle to the results.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SCOP-pysrc.html#search">source code</a></span>
</td>
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<span class="summary-type">UndoHandle</span>
</td><td class="summary">
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<tr>
<td><span class="summary-sig"><a href="Bio.SCOP-module.html#_open" class="summary-sig-name" onclick="show_private();">_open</a>(<span class="summary-sig-arg">cgi</span>,
<span class="summary-sig-arg">params</span>=<span class="summary-sig-default">{}</span>,
<span class="summary-sig-arg">get</span>=<span class="summary-sig-default">1</span>)</span><br />
Open a handle to SCOP.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.SCOP-pysrc.html#_open">source code</a></span>
</td>
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<!-- ==================== VARIABLES ==================== -->
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<td align="left"><span class="table-header">Variables</span></td>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#nodeCodeDict" class="summary-name">nodeCodeDict</a> = <code title="{'cf': 'fold',
'cl': 'class',
'dm': 'protein',
'fa': 'family',
'px': 'domain',
'sf': 'superfamily',
'sp': 'species'}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">cf</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">fold</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">cl</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">class</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">dm</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">protein</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-ellipsis">...</code></code>
</td>
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<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#_nodetype_to_code" class="summary-name" onclick="show_private();">_nodetype_to_code</a> = <code title="{'class': 'cl',
'domain': 'px',
'family': 'fa',
'fold': 'cf',
'protein': 'dm',
'species': 'sp',
'superfamily': 'sf'}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">class</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">cl</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">domain</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">px</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">family</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="nodeCodeOrder"></a><span class="summary-name">nodeCodeOrder</span> = <code title="['ro', 'cl', 'cf', 'sf', 'fa', 'dm', 'sp', 'px']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ro</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">cl</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">cf</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">sf</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">fa</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">dm</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">sp</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">px</code><code class="variable-quote">'</code><code class="variable-group">]</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="astralBibIds"></a><span class="summary-name">astralBibIds</span> = <code title="[10, 20, 25, 30, 35, 40, 50, 70, 90, 95, 100]"><code class="variable-group">[</code>10<code class="variable-op">, </code>20<code class="variable-op">, </code>25<code class="variable-op">, </code>30<code class="variable-op">, </code>35<code class="variable-op">, </code>40<code class="variable-op">, </code>50<code class="variable-op">, </code>70<code class="variable-op">, </code>90<code class="variable-op">, </code>95<code class="variable-op">, </code>100<code class="variable-group">]</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#astralEvs" class="summary-name">astralEvs</a> = <code title="[10,
5,
1,
0.5,
0.1,
0.05,
0.01,
0.005,
..."><code class="variable-group">[</code>10<code class="variable-op">, </code>5<code class="variable-op">, </code>1<code class="variable-op">, </code>0.5<code class="variable-op">, </code>0.1<code class="variable-op">, </code>0.05<code class="variable-op">, </code>0.01<code class="variable-op">, </code>0.005<code class="variable-op">, </code>0.001<code class="variable-op">, </code>0.0<code class="variable-ellipsis">...</code></code>
</td>
</tr>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#astralEv_to_file" class="summary-name">astralEv_to_file</a> = <code title="{1e-50: 'e-50',
1e-25: 'e-25',
1e-20: 'e-20',
1e-15: 'e-15',
1e-10: 'e-10',
1e-05: 'e-5',
0.0001: 'e-4',
0.001: 'e-3',
..."><code class="variable-group">{</code>1e-50<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-50</code><code class="variable-quote">'</code><code class="variable-op">, </code>1e-25<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-25</code><code class="variable-quote">'</code><code class="variable-op">, </code>1e-20<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-20</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#astralEv_to_sql" class="summary-name">astralEv_to_sql</a> = <code title="{1e-50: 'e_50',
1e-25: 'e_25',
1e-20: 'e_20',
1e-15: 'e_15',
1e-10: 'e_10',
1e-05: 'e_5',
0.0001: 'e_4',
0.001: 'e_3',
..."><code class="variable-group">{</code>1e-50<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_50</code><code class="variable-quote">'</code><code class="variable-op">, </code>1e-25<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_25</code><code class="variable-quote">'</code><code class="variable-op">, </code>1e-20<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_20</code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.SCOP-module.html#_domain_re" class="summary-name" onclick="show_private();">_domain_re</a> = <code title="re.compile(r'>?([\w_\.]*)\s+([\w\.]*)\s+\(([^\)]*)\) (.*)')">re.compile(r'><code class="re-op">?</code><code class="re-group">(</code><code class="re-group">[</code>\w_\.<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>\s<code class="re-op">+</code><code class="re-group">(</code><code class="re-group">[</code>\w\.<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>\s<code class="re-op">+</code>\(<code class="re-group">(</code><code class="re-group">[^</code>\)<code class="re-group">]</code><code class="re-op">*</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
</table>
<!-- ==================== FUNCTION DETAILS ==================== -->
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<td align="left"><span class="table-header">Function Details</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-FunctionDetails"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
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<a name="cmp_sccs"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">cmp_sccs</span>(<span class="sig-arg">sccs1</span>,
<span class="sig-arg">sccs2</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.SCOP-pysrc.html#cmp_sccs">source code</a></span>
</td>
</tr></table>
<p>Order SCOP concise classification strings (sccs).</p>
<p>a.4.5.1 < a.4.5.11 < b.1.1.1</p>
<p>A sccs (e.g. a.4.5.11) compactly represents a domain's classification.
The letter represents the class, and the numbers are the fold,
superfamily, and family, respectively.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="parse_domain"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">parse_domain</span>(<span class="sig-arg">str</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.SCOP-pysrc.html#parse_domain">source code</a></span>
</td>
</tr></table>
<p>Convert an ASTRAL header string into a Scop domain.</p>
<p>An ASTRAL (http://astral.stanford.edu/) header contains a concise
description of a SCOP domain. A very similar format is used when a Domain
object is converted into a string. The Domain returned by this method
contains most of the SCOP information, but it will not be located within
the SCOP hierarchy (i.e. The parent node will be None). The description
is composed of the SCOP protein and species descriptions.</p>
<p>A typical ASTRAL header looks like -- >d1tpt_1 a.46.2.1 (1-70)
Thymidine phosphorylase {Escherichia coli}</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="search"></a>
<div>
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cellspacing="0" width="100%" bgcolor="white">
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<h3 class="epydoc"><span class="sig"><span class="sig-name">search</span>(<span class="sig-arg">pdb</span>=<span class="sig-default">None</span>,
<span class="sig-arg">key</span>=<span class="sig-default">None</span>,
<span class="sig-arg">sid</span>=<span class="sig-default">None</span>,
<span class="sig-arg">disp</span>=<span class="sig-default">None</span>,
<span class="sig-arg">dir</span>=<span class="sig-default">None</span>,
<span class="sig-arg">loc</span>=<span class="sig-default">None</span>,
<span class="sig-arg">cgi</span>=<span class="sig-default">'http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi'</span>,
<span class="sig-arg">**keywds</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.SCOP-pysrc.html#search">source code</a></span>
</td>
</tr></table>
<p>Access search.cgi and return a handle to the results. See the online
help file for an explanation of the parameters:
http://scop.mrc-lmb.cam.ac.uk/scop/help.html</p>
<p>Raises an IOError if there's a network error.</p>
<dl class="fields">
</dl>
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<a name="_open"></a>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">_open</span>(<span class="sig-arg">cgi</span>,
<span class="sig-arg">params</span>=<span class="sig-default">{}</span>,
<span class="sig-arg">get</span>=<span class="sig-default">1</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.SCOP-pysrc.html#_open">source code</a></span>
</td>
</tr></table>
<p>Open a handle to SCOP. cgi is the URL for the cgi script to access.
params is a dictionary with the options to pass to it. get is a boolean
that describes whether a GET should be used. Does some simple error
checking, and will raise an IOError if it encounters one.</p>
<dl class="fields">
<dt>Returns: UndoHandle</dt>
</dl>
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<!-- ==================== VARIABLES DETAILS ==================== -->
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<td align="left"><span class="table-header">Variables Details</span></td>
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><span class="options">[<a href="#section-VariablesDetails"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
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<a name="nodeCodeDict"></a>
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cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">nodeCodeDict</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">cf</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">fold</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">cl</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">class</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">dm</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">protein</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">fa</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">family</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">px</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">domain</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">sf</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">superfamily</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">sp</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">species</code><code class="variable-quote">'</code><code class="variable-group">}</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="_nodetype_to_code"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">_nodetype_to_code</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">class</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">cl</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">domain</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">px</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">family</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">fa</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">fold</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">cf</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">protein</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">dm</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">species</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">sp</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">superfamily</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">sf</code><code class="variable-quote">'</code><code class="variable-group">}</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="astralEvs"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">astralEvs</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">[</code>10<code class="variable-op">,</code>
5<code class="variable-op">,</code>
1<code class="variable-op">,</code>
0.5<code class="variable-op">,</code>
0.1<code class="variable-op">,</code>
0.05<code class="variable-op">,</code>
0.01<code class="variable-op">,</code>
0.005<code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="astralEv_to_file"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">astralEv_to_file</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code>1e-50<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-50</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-25<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-25</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-20<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-20</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-15<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-15</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-10<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-10</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-05<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-5</code><code class="variable-quote">'</code><code class="variable-op">,</code>
0.0001<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-4</code><code class="variable-quote">'</code><code class="variable-op">,</code>
0.001<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e-3</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="astralEv_to_sql"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">astralEv_to_sql</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code>1e-50<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_50</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-25<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_25</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-20<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_20</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-15<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_15</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-10<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_10</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1e-05<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_5</code><code class="variable-quote">'</code><code class="variable-op">,</code>
0.0001<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_4</code><code class="variable-quote">'</code><code class="variable-op">,</code>
0.001<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">e_3</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="_domain_re"></a>
<div class="private">
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cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">_domain_re</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
re.compile(r'><code class="re-op">?</code><code class="re-group">(</code><code class="re-group">[</code>\w_\.<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>\s<code class="re-op">+</code><code class="re-group">(</code><code class="re-group">[</code>\w\.<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>\s<code class="re-op">+</code>\(<code class="re-group">(</code><code class="re-group">[^</code>\)<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>\) <code class="re-group">(</code>.<code class="re-op">*</code><code class="re-group">)</code>')
</pre></td></tr></table>
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