<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Restriction._Update.Update.RebaseUpdate</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Restriction-module.html">Package Restriction</a> :: <a href="Bio.Restriction._Update-module.html">Package _Update</a> :: <a href="Bio.Restriction._Update.Update-module.html">Module Update</a> :: Class RebaseUpdate </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class RebaseUpdate</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate">source code</a></span></p> <pre class="base-tree"> urllib.URLopener --+ | urllib.FancyURLopener --+ | <strong class="uidshort">RebaseUpdate</strong> </pre> <hr /> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">new RebaseUpdate instance</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">e_mail</span>=<span class="summary-sig-default">...</span>, <span class="summary-sig-arg">ftpproxy</span>=<span class="summary-sig-default">...</span>)</span><br /> if e_mail and ftpproxy are not given RebaseUpdate uses the corresponding variable from RanaConfig.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#prompt_user_passwd" class="summary-sig-name">prompt_user_passwd</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">host</span>, <span class="summary-sig-arg">realm</span>)</span><br /> Override this in a GUI environment!</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.prompt_user_passwd">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="openRebase"></a><span class="summary-sig-name">openRebase</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>=<span class="summary-sig-default">ftp_Rebase</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.openRebase">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="getfiles"></a><span class="summary-sig-name">getfiles</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">*files</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.getfiles">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="localtime"></a><span class="summary-sig-name">localtime</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.localtime">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="update"></a><span class="summary-sig-name">update</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">*files</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.update">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#__del__" class="summary-sig-name">__del__</a>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.__del__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>urllib.FancyURLopener</code></b>: <code>get_user_passwd</code>, <code>http_error_301</code>, <code>http_error_302</code>, <code>http_error_303</code>, <code>http_error_307</code>, <code>http_error_401</code>, <code>http_error_407</code>, <code>http_error_default</code>, <code>redirect_internal</code>, <code>retry_http_basic_auth</code>, <code>retry_https_basic_auth</code>, <code>retry_proxy_http_basic_auth</code>, <code>retry_proxy_https_basic_auth</code> </p> <p class="indent-wrapped-lines"><b>Inherited from <code>urllib.URLopener</code></b>: <code>addheader</code>, <code>cleanup</code>, <code>close</code>, <code>http_error</code>, <code>open</code>, <code>open_data</code>, <code>open_file</code>, <code>open_ftp</code>, <code>open_gopher</code>, <code>open_http</code>, <code>open_https</code>, <code>open_local_file</code>, <code>open_unknown</code>, <code>open_unknown_proxy</code>, <code>retrieve</code> </p> </td> </tr> </table> <!-- ==================== CLASS VARIABLES ==================== --> <a name="section-ClassVariables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>urllib.URLopener</code></b>: <code>version</code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__init__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">e_mail</span>=<span class="sig-default">...</span>, <span class="sig-arg">ftpproxy</span>=<span class="sig-default">...</span>)</span> <br /><em class="fname">(Constructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.__init__">source code</a></span> </td> </tr></table> <p>if e_mail and ftpproxy are not given RebaseUpdate uses the corresponding variable from RanaConfig.</p> <p>e_mail is the password for the anonymous ftp connection to Rebase. ftpproxy is the proxy to use if any.</p> <dl class="fields"> <dt>Returns: new RebaseUpdate instance</dt> <dt>Overrides: urllib.URLopener.__init__ </dt> </dl> </td></tr></table> </div> <a name="prompt_user_passwd"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">prompt_user_passwd</span>(<span class="sig-arg">self</span>, <span class="sig-arg">host</span>, <span class="sig-arg">realm</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.prompt_user_passwd">source code</a></span> </td> </tr></table> <p>Override this in a GUI environment!</p> <dl class="fields"> <dt>Overrides: urllib.FancyURLopener.prompt_user_passwd <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="__del__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__del__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Destructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction._Update.Update-pysrc.html#RebaseUpdate.__del__">source code</a></span> </td> </tr></table> <dl class="fields"> <dt>Overrides: urllib.URLopener.__del__ </dt> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" 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