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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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        Class&nbsp;LowQualityBlastError
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<h1 class="epydoc">Class LowQualityBlastError</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Blast.NCBIStandalone-pysrc.html#LowQualityBlastError">source&nbsp;code</a></span></p>
<pre class="base-tree">
              object --+        
                       |        
exceptions.BaseException --+    
                           |    
        exceptions.Exception --+
                               |
                              <strong class="uidshort">LowQualityBlastError</strong>
</pre>

<hr />
<p>Error caused by running a low quality sequence through BLAST.</p>
  <p>When low quality sequences (like GenBank entries containing only 
  stretches of a single nucleotide) are BLASTed, they will result in BLAST 
  generating an error and not being able to perform the BLAST. search. This
  error should be raised for the BLAST reports produced in this case.</p>

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