<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Restriction.Restriction.RestrictionBatch</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Restriction-module.html">Package Restriction</a> :: <a href="Bio.Restriction.Restriction-module.html">Module Restriction</a> :: Class RestrictionBatch </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class RestrictionBatch</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch">source code</a></span></p> <pre class="base-tree"> object --+ | sets.BaseSet --+ | sets.Set --+ | <strong class="uidshort">RestrictionBatch</strong> </pre> <hr /> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">new RestrictionBatch.</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">sequence</span>=<span class="summary-sig-default">...</span>)</span><br /> Construct a set from an optional iterable.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#__str__" class="summary-sig-name">__str__</a>(<span class="summary-sig-arg">self</span>)</span><br /> Return string representation of a set.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__str__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#__repr__" class="summary-sig-name">__repr__</a>(<span class="summary-sig-arg">self</span>)</span><br /> Return string representation of a set.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__repr__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#__contains__" class="summary-sig-name">__contains__</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span><br /> Report whether an element is a member of a set.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__contains__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__div__"></a><span class="summary-sig-name">__div__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__div__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__rdiv__"></a><span class="summary-sig-name">__rdiv__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__rdiv__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">enzyme class</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#get" class="summary-sig-name">get</a>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">enzyme</span>, <span class="summary-sig-arg">add</span>=<span class="summary-sig-default">...</span>)</span><br /> if add is True and enzyme is not in B add enzyme to B.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.get">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">RestrictionBatch</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="lambdasplit"></a><span class="summary-sig-name">lambdasplit</span>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">func</span>)</span><br /> the new batch will contains only the enzymes for which func return True.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.lambdasplit">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">add a new set of enzyme to B</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#add_supplier" class="summary-sig-name">add_supplier</a>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">letter</span>)</span><br /> letter represents the suppliers as defined in the dictionary RestrictionDictionary.suppliers return None.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.add_supplier">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">add a new set of enzyme to B</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="current_suppliers"></a><span class="summary-sig-name">current_suppliers</span>(<span class="summary-sig-arg">B</span>)</span><br /> return a sorted list of the suppliers which have been used to create the batch.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.current_suppliers">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__iadd__"></a><span class="summary-sig-name">__iadd__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span><br /> b += other -> add other to b, check the type of other.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__iadd__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__add__"></a><span class="summary-sig-name">__add__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span><br /> b + other -> new RestrictionBatch.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__add__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">remove other from B if other is a RestrictionType</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#remove" class="summary-sig-name">remove</a>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">other</span>)</span><br /> Safe Set.remove method.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.remove">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">add other to B if other is a RestrictionType</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#add" class="summary-sig-name">add</a>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">other</span>)</span><br /> Safe Set.add method.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.add">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">add other to B</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_nocheck"></a><span class="summary-sig-name">add_nocheck</span>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">other</span>)</span><br /> don't check type of other.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.add_nocheck">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">RestrictionType or raise ValueError</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="format"></a><span class="summary-sig-name">format</span>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">y</span>)</span><br /> if y is a RestrictionType return y if y can be evaluated to a RestrictionType return eval(y) raise a Value Error in all other case.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.format">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">bool</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="is_restriction"></a><span class="summary-sig-name">is_restriction</span>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">y</span>)</span><br /> True is y or eval(y) is a RestrictionType.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.is_restriction">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#split" class="summary-sig-name">split</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">*classes</span>, <span class="summary-sig-arg">**bool</span>)</span><br /> B.split(class, [class.__name__ = True]) -> new RestrictionBatch.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.split">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">tuple</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="elements"></a><span class="summary-sig-name">elements</span>(<span class="summary-sig-arg">B</span>)</span><br /> give all the names of the enzymes in B sorted alphabetically.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.elements">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">list</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="as_string"></a><span class="summary-sig-name">as_string</span>(<span class="summary-sig-arg">B</span>)</span><br /> return a list of the name of the elements of B.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.as_string">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">dict.</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="search"></a><span class="summary-sig-name">search</span>(<span class="summary-sig-arg">B</span>, <span class="summary-sig-arg">dna</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.search">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>sets.Set</code></b>: <code>__as_immutable__</code>, <code>__as_temporarily_immutable__</code>, <code>__getstate__</code>, <code>__hash__</code>, <code>__iand__</code>, <code>__ior__</code>, <code>__isub__</code>, <code>__ixor__</code>, <code>__setstate__</code>, <code>clear</code>, <code>difference_update</code>, <code>discard</code>, <code>intersection_update</code>, <code>pop</code>, <code>symmetric_difference_update</code>, <code>union_update</code>, <code>update</code> </p> <p class="indent-wrapped-lines"><b>Inherited from <code>sets.BaseSet</code></b>: <code>__and__</code>, <code>__cmp__</code>, <code>__copy__</code>, <code>__deepcopy__</code>, <code>__eq__</code>, <code>__ge__</code>, <code>__gt__</code>, <code>__iter__</code>, <code>__le__</code>, <code>__len__</code>, <code>__lt__</code>, <code>__ne__</code>, <code>__or__</code>, <code>__sub__</code>, <code>__xor__</code>, <code>copy</code>, <code>difference</code>, <code>intersection</code>, <code>issubset</code>, <code>issuperset</code>, <code>symmetric_difference</code>, <code>union</code> </p> <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code>sets.BaseSet</code></b> (private): <code>_binary_sanity_check</code>, <code>_compute_hash</code>, <code>_repr</code>, <code>_update</code> </p></div> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__delattr__</code>, <code>__getattribute__</code>, <code>__new__</code>, <code>__reduce__</code>, <code>__reduce_ex__</code>, <code>__setattr__</code> </p> </td> </tr> </table> <!-- ==================== CLASS METHODS ==================== --> <a name="section-ClassMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type">dict</span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="suppl_codes"></a><span class="summary-sig-name">suppl_codes</span>(<span class="summary-sig-arg">B</span>)</span><br /> letter code for the suppliers</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.suppl_codes">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="show_codes"></a><span class="summary-sig-name">show_codes</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.show_codes">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== PROPERTIES ==================== --> <a name="section-Properties"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Properties</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Properties" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__class__</code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__init__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">sequence</span>=<span class="sig-default">...</span>)</span> <br /><em class="fname">(Constructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__init__">source code</a></span> </td> </tr></table> <p>Construct a set from an optional iterable.</p> <dl class="fields"> <dt>Returns: new RestrictionBatch.</dt> <dt>Overrides: object.__init__ </dt> </dl> </td></tr></table> </div> <a name="__str__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__str__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Informal representation operator)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__str__">source code</a></span> </td> </tr></table> <p>Return string representation of a set.</p> <p>This looks like 'Set([<list of elements>])'.</p> <dl class="fields"> <dt>Overrides: object.__str__ <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="__repr__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__repr__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Representation operator)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__repr__">source code</a></span> </td> </tr></table> <p>Return string representation of a set.</p> <p>This looks like 'Set([<list of elements>])'.</p> <dl class="fields"> <dt>Overrides: object.__repr__ <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="__contains__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__contains__</span>(<span class="sig-arg">self</span>, <span class="sig-arg">other</span>)</span> <br /><em class="fname">(In operator)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.__contains__">source code</a></span> </td> </tr></table> <p>Report whether an element is a member of a set.</p> <p>(Called in response to the expression `element in self'.)</p> <dl class="fields"> <dt>Overrides: sets.BaseSet.__contains__ <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="get"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">get</span>(<span class="sig-arg">B</span>, <span class="sig-arg">enzyme</span>, <span class="sig-arg">add</span>=<span class="sig-default">...</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.get">source code</a></span> </td> </tr></table> <p>if add is True and enzyme is not in B add enzyme to B. if add is False (which is the default) only return enzyme. if enzyme is not a RestrictionType or can not be evaluated to a RestrictionType, raise a ValueError.</p> <dl class="fields"> <dt>Returns: enzyme class</dt> </dl> </td></tr></table> </div> <a name="add_supplier"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">add_supplier</span>(<span class="sig-arg">B</span>, <span class="sig-arg">letter</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.add_supplier">source code</a></span> </td> </tr></table> <p>letter represents the suppliers as defined in the dictionary RestrictionDictionary.suppliers return None. raise a KeyError if letter is not a supplier code.</p> <dl class="fields"> <dt>Returns: add a new set of enzyme to B</dt> </dl> </td></tr></table> </div> <a name="remove"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">remove</span>(<span class="sig-arg">B</span>, <span class="sig-arg">other</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.remove">source code</a></span> </td> </tr></table> <p>Safe Set.remove method. Verify that other is a RestrictionType or can be evaluated to a RestrictionType. raise a ValueError if other can not be evaluated to a RestrictionType. raise a KeyError if other is not in B.</p> <dl class="fields"> <dt>Returns: remove other from B if other is a RestrictionType</dt> <dt>Overrides: sets.Set.remove </dt> </dl> </td></tr></table> </div> <a name="add"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">add</span>(<span class="sig-arg">B</span>, <span class="sig-arg">other</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.add">source code</a></span> </td> </tr></table> <p>Safe Set.add method. Verify that other is a RestrictionType or can be evaluated to a RestrictionType. raise a ValueError if other can not be evaluated to a RestrictionType.</p> <dl class="fields"> <dt>Returns: add other to B if other is a RestrictionType</dt> <dt>Overrides: sets.Set.add </dt> </dl> </td></tr></table> </div> <a name="split"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">split</span>(<span class="sig-arg">self</span>, <span class="sig-arg">*classes</span>, <span class="sig-arg">**bool</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Restriction.Restriction-pysrc.html#RestrictionBatch.split">source code</a></span> </td> </tr></table> <p>B.split(class, [class.__name__ = True]) -> new RestrictionBatch.</p> <p>it works but it is slow, so it has really an interest when splitting over multiple conditions.</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:38 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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