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<a href="Bio-module.html">Package Bio</a> ::
Package Restriction
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<h1 class="epydoc">Package Restriction</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Restriction-pysrc.html">source code</a></span></p>
<pre class="literalblock">
Usage :
=====
>>> from Rana.fts import fts #
>>> from Rana.Vector import * # Just a way to get a sequence.
>>> from Bio.Seq import Seq # Use your prefer method here.
>>> pbr = fts(pBR322) #
>>> seq = Seq(str(pbr)) #
>>>
>>> from Bio.Restriction import *
>>> a = Analysis(AllEnzymes, seq, linear=False)
>>> b = a.blunt()
>>> a.print_that() # no argument -> print all the results
AasI : 2169, 2582.
AatII : 4289.
Acc16I : 263, 1359, 1457, 3589.
...
More enzymes here.
...
>>> b = a.without_site()
>>> a.print_that(b, '', '
Enzymes which do not cut pBR322.
')
Enzymes which do not cut pBR322.
AarI AatI Acc65I AcsI AcvI AdeI AflII AgeI
AhlI AleI AloI ApaI ApoI AscI AsiAI AsiSI
Asp718I AspA2I AsuII AvaIII AvrII AxyI BaeI BbrPI
BbvCI BclI BcuI BfrBI BfrI BglII BlnI BlpI
BmgBI BmgI BplI Bpu1102I Bpu14I BsaXI Bse21I BsePI
BseRI BshTI BsiWI Bsp119I Bsp120I Bsp1407I Bsp1720I Bsp19I
BspT104I BspTI BsrGI BssHI BssHII Bst98I BstAUI BstBI
BstEII BstPI BstSNI BstXI Bsu36I BtrI CciNI CelII
Cfr42I Cfr9I CpoI Csp45I CspAI CspCI CspI DraIII
DrdII Ecl136II Eco105I Eco147I Eco72I Eco81I Eco91I EcoICRI
EcoO65I EcoRI EcoT22I EspI FalI FbaI FseI FunII
HpaI KpnI Ksp22I KspAI KspI MabI MfeI MluI
Mph1103I MspCI MssI MunI NcoI NotI NsiI NspV
OliI PacI PaeR7I PasI PauI PceI Pfl23II PinAI
PmaCI PmeI PmlI Ppu10I PsiI Psp124BI PspAI PspCI
PspEI PspLI PspOMI PspXI PsrI RleAI Rsr2I RsrII
SacI SacII SanDI SauI SbfI SciI SdaI SexAI
SfiI Sfr274I Sfr303I SfuI SgfI SgrBI SlaI SmaI
SmiI SnaBI SpeI SplI SrfI Sse232I Sse8387I Sse8647I
SseBI SspBI SstI StuI SunI SwaI TliI UthSI
Vha464I XapI XbaI XcmI XhoI XmaCI XmaI XmaJI
Zsp2I
>>>
</pre>
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<li> <strong class="uidlink"><a href="Bio.Restriction.PrintFormat-module.html">Bio.Restriction.PrintFormat</a></strong> </li>
<li> <strong class="uidlink"><a href="Bio.Restriction.RanaConfig-module.html">Bio.Restriction.RanaConfig</a></strong> </li>
<li> <strong class="uidlink"><a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a></strong>: <em class="summary">Notes about the diverses class of the restriction enzyme implementation.</em> </li>
<li> <strong class="uidlink"><a href="Bio.Restriction.Restriction_Dictionary-module.html">Bio.Restriction.Restriction_Dictionary</a></strong> </li>
<li class="private"> <strong class="uidlink"><a href="Bio.Restriction._Update-module.html">Bio.Restriction._Update</a></strong>
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<li> <strong class="uidlink"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a></strong>: <em class="summary">Convert a serie of Rebase files into a Restriction_Dictionary.py module.</em> </li>
<li> <strong class="uidlink"><a href="Bio.Restriction._Update.Update-module.html">Bio.Restriction._Update.Update</a></strong>: <em class="summary">Update the Rebase emboss files used by Restriction to build the
Restriction_Dictionary.py module.</em> </li>
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