<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Prosite._Scanner</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Prosite-module.html">Package Prosite</a> :: Class _Scanner </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Prosite._Scanner-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class _Scanner</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner">source code</a></span></p> <p>Scans Prosite-formatted data.</p> <p>Tested with: Release 15.0, July 1998</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Prosite._Scanner-class.html#feed" class="summary-sig-name">feed</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">handle</span>, <span class="summary-sig-arg">consumer</span>)</span><br /> Feed in Prosite data for scanning.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner.feed">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_copyrights"></a><span class="summary-sig-name">_scan_copyrights</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_copyrights">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_record"></a><span class="summary-sig-name">_scan_record</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_record">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_line"></a><span class="summary-sig-name">_scan_line</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line_type</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">event_fn</span>, <span class="summary-sig-arg">exactly_one</span>=<span class="summary-sig-default">None</span>, <span class="summary-sig-arg">one_or_more</span>=<span class="summary-sig-default">None</span>, <span class="summary-sig-arg">any_number</span>=<span class="summary-sig-default">None</span>, <span class="summary-sig-arg">up_to_one</span>=<span class="summary-sig-default">None</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_line">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_id"></a><span class="summary-sig-name">_scan_id</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_id">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_ac"></a><span class="summary-sig-name">_scan_ac</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_ac">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_dt"></a><span class="summary-sig-name">_scan_dt</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_dt">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_de"></a><span class="summary-sig-name">_scan_de</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_de">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_pa"></a><span class="summary-sig-name">_scan_pa</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_pa">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_ma"></a><span class="summary-sig-name">_scan_ma</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_ma">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_pp"></a><span class="summary-sig-name">_scan_pp</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_pp">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_ru"></a><span class="summary-sig-name">_scan_ru</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_ru">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_nr"></a><span class="summary-sig-name">_scan_nr</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_nr">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_cc"></a><span class="summary-sig-name">_scan_cc</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_cc">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_dr"></a><span class="summary-sig-name">_scan_dr</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_dr">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_3d"></a><span class="summary-sig-name">_scan_3d</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_3d">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_pr"></a><span class="summary-sig-name">_scan_pr</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_pr">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_do"></a><span class="summary-sig-name">_scan_do</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_do">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_scan_terminator"></a><span class="summary-sig-name">_scan_terminator</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">uhandle</span>, <span class="summary-sig-arg">consumer</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner._scan_terminator">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== CLASS VARIABLES ==================== --> <a name="section-ClassVariables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Prosite._Scanner-class.html#_scan_fns" class="summary-name" onclick="show_private();">_scan_fns</a> = <code title="[_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_pa, _scan_ma, _scan_pp,\ _scan_ru, _scan_nr, _scan_cc, _scan_ma, _scan_nr, _scan_cc, _scan_dr,\ _scan_3d, _scan_pr, _scan_do, _scan_terminator]">[_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_pa,<code class="variable-ellipsis">...</code></code> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="feed"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">feed</span>(<span class="sig-arg">self</span>, <span class="sig-arg">handle</span>, <span class="sig-arg">consumer</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Prosite-pysrc.html#_Scanner.feed">source code</a></span> </td> </tr></table> <p>Feed in Prosite data for scanning. handle is a file-like object that contains prosite data. consumer is a Consumer object that will receive events as the report is scanned.</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== CLASS VARIABLE DETAILS ==================== --> <a name="section-ClassVariableDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variable Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariableDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="_scan_fns"></a> <div class="private"> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">_scan_fns</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> [_scan_id, _scan_ac, _scan_dt, _scan_de, _scan_pa, _scan_ma, _scan_pp,<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> _scan_ru, _scan_nr, _scan_cc, _scan_ma, _scan_nr, _scan_cc, _scan_dr,<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> _scan_3d, _scan_pr, _scan_do, _scan_terminator] </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:37 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want 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