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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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        Class&nbsp;ExPASyDictionary
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class ExPASyDictionary</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary">source&nbsp;code</a></span></p>
<p>Access PROSITE at ExPASy using a read-only dictionary interface.</p>

<!-- ==================== INSTANCE METHODS ==================== -->
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          <td><span class="summary-sig"><a href="Bio.Prosite.ExPASyDictionary-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">delay</span>=<span class="summary-sig-default">5.0</span>,
        <span class="summary-sig-arg">parser</span>=<span class="summary-sig-default">None</span>)</span><br />
      Create a new Dictionary to access PROSITE.</td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__init__">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="__len__"></a><span class="summary-sig-name">__len__</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__len__">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="clear"></a><span class="summary-sig-name">clear</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.clear">source&nbsp;code</a></span>
            
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      <span class="summary-type">&nbsp;</span>
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          <td><span class="summary-sig"><a name="__setitem__"></a><span class="summary-sig-name">__setitem__</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">key</span>,
        <span class="summary-sig-arg">item</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__setitem__">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="update"></a><span class="summary-sig-name">update</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.update">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="copy"></a><span class="summary-sig-name">copy</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.copy">source&nbsp;code</a></span>
            
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      <span class="summary-type">&nbsp;</span>
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          <td><span class="summary-sig"><a name="keys"></a><span class="summary-sig-name">keys</span>(<span class="summary-sig-arg">self</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.keys">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="items"></a><span class="summary-sig-name">items</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.items">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="values"></a><span class="summary-sig-name">values</span>(<span class="summary-sig-arg">self</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.values">source&nbsp;code</a></span>
            
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      <span class="summary-type">bool</span>
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          <td><span class="summary-sig"><a name="has_key"></a><span class="summary-sig-name">has_key</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">id</span>)</span></td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.has_key">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="get"></a><span class="summary-sig-name">get</span>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">id</span>,
        <span class="summary-sig-arg">failobj</span>=<span class="summary-sig-default">None</span>)</span></td>
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      <span class="summary-type">object</span>
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          <td><span class="summary-sig"><a href="Bio.Prosite.ExPASyDictionary-class.html#__getitem__" class="summary-sig-name">__getitem__</a>(<span class="summary-sig-arg">self</span>,
        <span class="summary-sig-arg">id</span>)</span><br />
      Return a Prosite entry.</td>
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            <span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__getitem__">source&nbsp;code</a></span>
            
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<!-- ==================== METHOD DETAILS ==================== -->
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<a name="__init__"></a>
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  <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
        <span class="sig-arg">delay</span>=<span class="sig-default">5.0</span>,
        <span class="sig-arg">parser</span>=<span class="sig-default">None</span>)</span>
    <br /><em class="fname">(Constructor)</em>
  </h3>
  </td><td align="right" valign="top"
    ><span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__init__">source&nbsp;code</a></span>&nbsp;
    </td>
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  <p>Create a new Dictionary to access PROSITE.  parser is an optional 
  parser (e.g. Prosite.RecordParser) object to change the results into 
  another form.  If set to None, then the raw contents of the file will be 
  returned.  delay is the number of seconds to wait between each query.</p>
  <dl class="fields">
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  <h3 class="epydoc"><span class="sig"><span class="sig-name">__getitem__</span>(<span class="sig-arg">self</span>,
        <span class="sig-arg">id</span>)</span>
    <br /><em class="fname">(Indexing operator)</em>
  </h3>
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    ><span class="codelink"><a href="Bio.Prosite-pysrc.html#ExPASyDictionary.__getitem__">source&nbsp;code</a></span>&nbsp;
    </td>
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  <p>Return a Prosite entry.  id is either the id or accession for the 
  entry.  Raises a KeyError if there's an error.</p>
  <dl class="fields">
    <dt>Returns: object</dt>
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