<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.PopGen.GenePop.Record</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.PopGen-module.html">Package PopGen</a> :: <a href="Bio.PopGen.GenePop-module.html">Package GenePop</a> :: Class Record </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.PopGen.GenePop.Record-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class Record</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record">source code</a></span></p> <pre class="literalblock"> Holds information from a GenePop record. Members: marker_len The marker length (2 or 3 digit code per allele). comment_line Comment line. loci_list List of loci names. populations List of population data. populations has one element per population. Each element is itself a list of individuals, each individual is a pair composed by individual name and a list of alleles (2 per marker): Example [ [ ('Ind1', [(1,2), (3,3), (200,201)], ('Ind2', [(2,None), (3,3), (None,None)], ], [ ('Other1', [(1,1), (4,3), (200,200)], ] ] </pre> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__str__"></a><span class="summary-sig-name">__str__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.__str__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.PopGen.GenePop.Record-class.html#split_in_pops" class="summary-sig-name">split_in_pops</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">pop_names</span>)</span><br /> Splits a GP record in a dictionary with 1 pop per entry.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.split_in_pops">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.PopGen.GenePop.Record-class.html#split_in_loci" class="summary-sig-name">split_in_loci</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">gp</span>)</span><br /> Splits a GP record in a dictionary with 1 locus per entry.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.split_in_loci">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remove_population"></a><span class="summary-sig-name">remove_population</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">pos</span>)</span><br /> Removes a population (by position).</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.remove_population">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remove_locus_by_position"></a><span class="summary-sig-name">remove_locus_by_position</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">pos</span>)</span><br /> Removes a locus by position.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.remove_locus_by_position">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remove_locus_by_name"></a><span class="summary-sig-name">remove_locus_by_name</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">name</span>)</span><br /> Removes a locus by name.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.remove_locus_by_name">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="split_in_pops"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">split_in_pops</span>(<span class="sig-arg">self</span>, <span class="sig-arg">pop_names</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.split_in_pops">source code</a></span> </td> </tr></table> <p>Splits a GP record in a dictionary with 1 pop per entry.</p> <p>Given a record with n pops and m loci returns a dictionary of records (key pop_name) where each item is a record with a single pop and m loci.</p> <p>Parameters: pop_names - Population names</p> <dl class="fields"> </dl> </td></tr></table> </div> <a name="split_in_loci"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">split_in_loci</span>(<span class="sig-arg">self</span>, <span class="sig-arg">gp</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.PopGen.GenePop-pysrc.html#Record.split_in_loci">source code</a></span> </td> </tr></table> <p>Splits a GP record in a dictionary with 1 locus per entry.</p> <p>Given a record with n pops and m loci returns a dictionary of records (key locus name) where each item is a record with a single locus and n pops.</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a 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