<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Pathway.Rep.MultiGraph.MultiGraph</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Pathway-module.html">Package Pathway</a> :: <a href="Bio.Pathway.Rep-module.html">Package Rep</a> :: <a href="Bio.Pathway.Rep.MultiGraph-module.html">Module MultiGraph</a> :: Class MultiGraph </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class MultiGraph</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph">source code</a></span></p> <p>A directed multigraph abstraction with labeled edges.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">nodes</span>=<span class="summary-sig-default"><code class="variable-group">[</code><code class="variable-group">]</code></span>)</span><br /> Initializes a new MultiGraph object.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__eq__"></a><span class="summary-sig-name">__eq__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">g</span>)</span><br /> Returns true if g is equal to this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.__eq__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__ne__"></a><span class="summary-sig-name">__ne__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">g</span>)</span><br /> Returns true if g is not equal to this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.__ne__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__repr__"></a><span class="summary-sig-name">__repr__</span>(<span class="summary-sig-arg">self</span>)</span><br /> Returns an unique string representation of this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.__repr__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__str__"></a><span class="summary-sig-name">__str__</span>(<span class="summary-sig-arg">self</span>)</span><br /> Returns a concise string description of this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.__str__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_node"></a><span class="summary-sig-name">add_node</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">node</span>)</span><br /> Adds a node to this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.add_node">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_edge"></a><span class="summary-sig-name">add_edge</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">source</span>, <span class="summary-sig-arg">to</span>, <span class="summary-sig-arg">label</span>=<span class="summary-sig-default">None</span>)</span><br /> Adds an edge to this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.add_edge">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="child_edges"></a><span class="summary-sig-name">child_edges</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">parent</span>)</span><br /> Returns a list of (child, label) pairs for parent.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.child_edges">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="children"></a><span class="summary-sig-name">children</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">parent</span>)</span><br /> Returns a list of unique children for parent.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.children">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="edges"></a><span class="summary-sig-name">edges</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">label</span>)</span><br /> Returns a list of all the edges with this label.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.edges">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="labels"></a><span class="summary-sig-name">labels</span>(<span class="summary-sig-arg">self</span>)</span><br /> Returns a list of all the edge labels in this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.labels">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="nodes"></a><span class="summary-sig-name">nodes</span>(<span class="summary-sig-arg">self</span>)</span><br /> Returns a list of the nodes in this graph.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.nodes">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parent_edges"></a><span class="summary-sig-name">parent_edges</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">child</span>)</span><br /> Returns a list of (parent, label) pairs for child.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.parent_edges">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parents"></a><span class="summary-sig-name">parents</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">child</span>)</span><br /> Returns a list of unique parents for child.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.parents">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remove_node"></a><span class="summary-sig-name">remove_node</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">node</span>)</span><br /> Removes node and all edges connected to it.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.remove_node">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#remove_edge" class="summary-sig-name">remove_edge</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">parent</span>, <span class="summary-sig-arg">child</span>, <span class="summary-sig-arg">label</span>)</span><br /> Removes edge.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.remove_edge">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="remove_edge"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">remove_edge</span>(<span class="sig-arg">self</span>, <span class="sig-arg">parent</span>, <span class="sig-arg">child</span>, <span class="sig-arg">label</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.Pathway.Rep.MultiGraph-pysrc.html#MultiGraph.remove_edge">source code</a></span> </td> </tr></table> <p>Removes edge. -- NOT IMPLEMENTED</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:37 2008 </td> <td align="right" class="footer"> <a 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