<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Parsers.spark.GenericParser</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Parsers-module.html">Package Parsers</a> :: <a href="Bio.Parsers.spark-module.html">Module spark</a> :: Class GenericParser </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Parsers.spark.GenericParser-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class GenericParser</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser">source code</a></span></p> <dl><dt>Known Subclasses:</dt> <dd> <ul class="subclass-list"> <li><a href="Bio.Decode.DecodeParser-class.html">Decode.DecodeParser</a></li><li>, <a href="Bio.Parsers.spark.GenericASTBuilder-class.html">GenericASTBuilder</a></li><li>, <a href="Bio.Parsers.spark.GenericASTMatcher-class.html">GenericASTMatcher</a></li><li>, <a href="Bio.GenBank.LocationParser.LocationParser-class.html">GenBank.LocationParser.LocationParser</a></li> </ul> </dd></dl> <hr /> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">start</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="addRule"></a><span class="summary-sig-name">addRule</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">doc</span>, <span class="summary-sig-arg">func</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.addRule">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="ambiguity"></a><span class="summary-sig-name">ambiguity</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">children</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.ambiguity">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="augment"></a><span class="summary-sig-name">augment</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">start</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.augment">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="buildState"></a><span class="summary-sig-name">buildState</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">token</span>, <span class="summary-sig-arg">states</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">tree</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.buildState">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="buildTree"></a><span class="summary-sig-name">buildTree</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tokens</span>, <span class="summary-sig-arg">tree</span>, <span class="summary-sig-arg">root</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.buildTree">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="buildTree_r"></a><span class="summary-sig-name">buildTree_r</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">stack</span>, <span class="summary-sig-arg">tokens</span>, <span class="summary-sig-arg">tokpos</span>, <span class="summary-sig-arg">tree</span>, <span class="summary-sig-arg">root</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.buildTree_r">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="collectRules"></a><span class="summary-sig-name">collectRules</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.collectRules">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="error"></a><span class="summary-sig-name">error</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">token</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.error">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="makeFIRST"></a><span class="summary-sig-name">makeFIRST</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.makeFIRST">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parse"></a><span class="summary-sig-name">parse</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">tokens</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.parse">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="preprocess"></a><span class="summary-sig-name">preprocess</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">rule</span>, <span class="summary-sig-arg">func</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.preprocess">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="resolve"></a><span class="summary-sig-name">resolve</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">list</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.resolve">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="typestring"></a><span class="summary-sig-name">typestring</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">token</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Parsers.spark-pysrc.html#GenericParser.typestring">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== CLASS VARIABLES ==================== --> <a name="section-ClassVariables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="_EOF"></a><span class="summary-name">_EOF</span> = <code title="'EOF'"><code class="variable-quote">'</code><code class="variable-string">EOF</code><code class="variable-quote">'</code></code> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="_START"></a><span class="summary-name">_START</span> = <code title="'START'"><code class="variable-quote">'</code><code class="variable-string">START</code><code class="variable-quote">'</code></code> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:37 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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