<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.ParserSupport.AbstractParser</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.ParserSupport-module.html">Module ParserSupport</a> :: Class AbstractParser </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.ParserSupport.AbstractParser-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class AbstractParser</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.ParserSupport-pysrc.html#AbstractParser">source code</a></span></p> <dl><dt>Known Subclasses:</dt> <dd> <ul class="subclass-list"> <li><a href="Bio.Medline.RecordParser-class.html">Medline.RecordParser</a></li><li>, <a href="Bio.SwissProt.KeyWList.ListParser-class.html">SwissProt.KeyWList.ListParser</a></li><li>, <a href="Bio.SwissProt.SProt.RecordParser-class.html">SwissProt.SProt.RecordParser</a></li><li>, <a href="Bio.SwissProt.SProt.SequenceParser-class.html">SwissProt.SProt.SequenceParser</a></li><li>, <a href="Bio.Prosite.RecordParser-class.html">Prosite.RecordParser</a></li><li>, <a href="Bio.Prosite.Prodoc.RecordParser-class.html">Prosite.Prodoc.RecordParser</a></li><li>, <a href="Bio.Sequencing.Phd.RecordParser-class.html">Sequencing.Phd.RecordParser</a></li><li>, <a href="Bio.Sequencing.Ace.ACEParser-class.html">Sequencing.Ace.ACEParser</a></li><li>, <a href="Bio.Sequencing.Ace.RecordParser-class.html">Sequencing.Ace.RecordParser</a></li><li>, <a href="Bio.UniGene.RecordParser-class.html">UniGene.RecordParser</a></li><li>, <a href="Bio.MEME.Parser.MASTParser-class.html">MEME.Parser.MASTParser</a></li><li>, <a href="Bio.MEME.Parser.MEMEParser-class.html">MEME.Parser.MEMEParser</a></li><li>, <a href="Bio.AlignAce.Parser.AlignAceParser-class.html">AlignAce.Parser.AlignAceParser</a></li><li>, <a href="Bio.AlignAce.Parser.CompareAceParser-class.html">AlignAce.Parser.CompareAceParser</a></li><li>, <a href="Bio.PopGen.FDist.RecordParser-class.html">PopGen.FDist.RecordParser</a></li><li>, <a href="Bio.PopGen.GenePop.RecordParser-class.html">PopGen.GenePop.RecordParser</a></li><li>, <a href="Bio.Enzyme.RecordParser-class.html">Enzyme.RecordParser</a></li><li>, <a href="Bio.Blast.NCBIStandalone.BlastErrorParser-class.html">Blast.NCBIStandalone.BlastErrorParser</a></li><li>, <a href="Bio.Blast.NCBIStandalone.BlastParser-class.html">Blast.NCBIStandalone.BlastParser</a></li><li>, <a href="Bio.Blast.NCBIStandalone.PSIBlastParser-class.html">Blast.NCBIStandalone.PSIBlastParser</a></li><li>, <a href="Bio.Blast.NCBIWWW.BlastParser-class.html">Blast.NCBIWWW.BlastParser</a></li><li>, <a href="Bio.Compass.RecordParser-class.html">Compass.RecordParser</a></li> </ul> </dd></dl> <hr /> <p>Base class for other parsers.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parse"></a><span class="summary-sig-name">parse</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">handle</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.ParserSupport-pysrc.html#AbstractParser.parse">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parse_file"></a><span class="summary-sig-name">parse_file</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">filename</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.ParserSupport-pysrc.html#AbstractParser.parse_file">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parse_str"></a><span class="summary-sig-name">parse_str</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">string</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.ParserSupport-pysrc.html#AbstractParser.parse_str">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:37 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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