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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.PDB-module.html">Package PDB</a> ::
Module Polypeptide
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module Polypeptide</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html">source code</a></span></p>
<p>Polypeptide related classes (construction and representation).</p>
<p>Example:</p>
<pre class="py-doctest">
<span class="py-prompt">>>> </span>ppb=PPBuilder()
<span class="py-prompt">>>> </span><span class="py-keyword">for</span> pp <span class="py-keyword">in</span> ppb.build_peptides(structure):
<span class="py-prompt">>>> </span> <span class="py-keyword">print</span> pp.get_sequence()</pre>
<!-- ==================== CLASSES ==================== -->
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<span class="summary-type"> </span>
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<a href="Bio.PDB.Polypeptide.Polypeptide-class.html" class="summary-name">Polypeptide</a><br />
A polypeptide is simply a list of <a
href="Bio.PDB.Residue.Residue-class.html" class="link">Residue</a>
objects.
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<span class="summary-type"> </span>
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<a href="Bio.PDB.Polypeptide._PPBuilder-class.html" class="summary-name" onclick="show_private();">_PPBuilder</a><br />
Base class to extract polypeptides.
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<span class="summary-type"> </span>
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<a href="Bio.PDB.Polypeptide.CaPPBuilder-class.html" class="summary-name">CaPPBuilder</a><br />
Use CA--CA distance to find polypeptides.
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<span class="summary-type"> </span>
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<a href="Bio.PDB.Polypeptide.PPBuilder-class.html" class="summary-name">PPBuilder</a><br />
Use C--N distance to find polypeptides.
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<!-- ==================== FUNCTIONS ==================== -->
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#index_to_one" class="summary-sig-name">index_to_one</a>(<span class="summary-sig-arg">index</span>)</span><br />
Index to corresponding one letter amino acid name.</td>
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<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#index_to_one">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#one_to_index" class="summary-sig-name">one_to_index</a>(<span class="summary-sig-arg">s</span>)</span><br />
One letter code to index.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#one_to_index">source code</a></span>
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<span class="summary-type"> </span>
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#index_to_three" class="summary-sig-name">index_to_three</a>(<span class="summary-sig-arg">i</span>)</span><br />
Index to corresponding three letter amino acid name.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#index_to_three">source code</a></span>
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<span class="summary-type"> </span>
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#three_to_index" class="summary-sig-name">three_to_index</a>(<span class="summary-sig-arg">s</span>)</span><br />
Three letter code to index.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#three_to_index">source code</a></span>
</td>
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<span class="summary-type"> </span>
</td><td class="summary">
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#three_to_one" class="summary-sig-name">three_to_one</a>(<span class="summary-sig-arg">s</span>)</span><br />
Three letter code to one letter code.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#three_to_one">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#one_to_three" class="summary-sig-name">one_to_three</a>(<span class="summary-sig-arg">s</span>)</span><br />
One letter code to three letter code.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#one_to_three">source code</a></span>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.PDB.Polypeptide-module.html#is_aa" class="summary-sig-name">is_aa</a>(<span class="summary-sig-arg">residue</span>,
<span class="summary-sig-arg">standard</span>=<span class="summary-sig-default">0</span>)</span><br />
Return 1 if residue object/string is an amino acid.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#is_aa">source code</a></span>
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<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
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<td align="left"><span class="table-header">Variables</span></td>
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><span class="options">[<a href="#section-Variables"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#__doc__" class="summary-name">__doc__</a> = <code title=""""
Polypeptide related classes (construction and representation).
Example:
>>> ppb=PPBuilder()
>>> for pp in ppb.build_peptides(structure):
>>> print pp.get_sequence()
..."><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#standard_aa_names" class="summary-name">standard_aa_names</a> = <code title="['ALA',
'CYS',
'ASP',
'GLU',
'PHE',
'GLY',
'HIS',
'ILE',
..."><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">,</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="aa1"></a><span class="summary-name">aa1</span> = <code title="'ACDEFGHIKLMNPQRSTVWY'"><code class="variable-quote">'</code><code class="variable-string">ACDEFGHIKLMNPQRSTVWY</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#aa3" class="summary-name">aa3</a> = <code title="['ALA',
'CYS',
'ASP',
'GLU',
'PHE',
'GLY',
'HIS',
'ILE',
..."><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">HIS</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ILE</code><code class="variable-quote">'</code><code class="variable-op">,</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#d1_to_index" class="summary-name">d1_to_index</a> = <code title="{'A': 0,
'C': 1,
'D': 2,
'E': 3,
'F': 4,
'G': 5,
'H': 6,
'I': 7,
..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>4<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">,</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#dindex_to_1" class="summary-name">dindex_to_1</a> = <code title="{0: 'A',
1: 'C',
2: 'D',
3: 'E',
4: 'F',
5: 'G',
6: 'H',
7: 'I',
..."><code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">, </code>1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">, </code>3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">, </code>5<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">,</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#d3_to_index" class="summary-name">d3_to_index</a> = <code title="{'ALA': 0,
'ARG': 14,
'ASN': 11,
'ASP': 2,
'CYS': 1,
'GLN': 13,
'GLU': 3,
'GLY': 5,
..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ARG</code><code class="variable-quote">'</code><code class="variable-op">: </code>14<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ASN</code><code class="variable-quote">'</code><code class="variable-op">: </code>11<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">: </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.PDB.Polypeptide-module.html#dindex_to_3" class="summary-name">dindex_to_3</a> = <code title="{0: 'ALA',
1: 'CYS',
2: 'ASP',
3: 'GLU',
4: 'PHE',
5: 'GLY',
6: 'HIS',
7: 'ILE',
..."><code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">, </code>1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">, </code>3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-ellipsis">...</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="i"></a><span class="summary-name">i</span> = <code title="19">19</code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="n1"></a><span class="summary-name">n1</span> = <code title="'Y'"><code class="variable-quote">'</code><code class="variable-string">Y</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="n3"></a><span class="summary-name">n3</span> = <code title="'TYR'"><code class="variable-quote">'</code><code class="variable-string">TYR</code><code class="variable-quote">'</code></code>
</td>
</tr>
</table>
<!-- ==================== FUNCTION DETAILS ==================== -->
<a name="section-FunctionDetails"></a>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Function Details</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-FunctionDetails"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
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</table>
<a name="index_to_one"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">index_to_one</span>(<span class="sig-arg">index</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#index_to_one">source code</a></span>
</td>
</tr></table>
<p>Index to corresponding one letter amino acid name. For example: 0 to
A.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="one_to_index"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">one_to_index</span>(<span class="sig-arg">s</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#one_to_index">source code</a></span>
</td>
</tr></table>
<p>One letter code to index. For example: A to 0.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="index_to_three"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">index_to_three</span>(<span class="sig-arg">i</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#index_to_three">source code</a></span>
</td>
</tr></table>
<p>Index to corresponding three letter amino acid name. For example: 0 to
ALA.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="three_to_index"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
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<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">three_to_index</span>(<span class="sig-arg">s</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#three_to_index">source code</a></span>
</td>
</tr></table>
<p>Three letter code to index. For example: ALA to 0.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="three_to_one"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">three_to_one</span>(<span class="sig-arg">s</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#three_to_one">source code</a></span>
</td>
</tr></table>
<p>Three letter code to one letter code. For example: ALA to A.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="one_to_three"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">one_to_three</span>(<span class="sig-arg">s</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#one_to_three">source code</a></span>
</td>
</tr></table>
<p>One letter code to three letter code. For example: A to ALA.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="is_aa"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
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<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">is_aa</span>(<span class="sig-arg">residue</span>,
<span class="sig-arg">standard</span>=<span class="sig-default">0</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.PDB.Polypeptide-pysrc.html#is_aa">source code</a></span>
</td>
</tr></table>
<p>Return 1 if residue object/string is an amino acid.</p>
<dl class="fields">
<dt>Parameters:</dt>
<dd><ul class="nomargin-top">
<li><strong class="pname"><code>residue</code></strong> (<a href="Bio.PDB.Residue.Residue-class.html"
class="link">Residue</a> or string) - a <a href="Bio.PDB.Residue.Residue-class.html"
class="link">Residue</a> object OR a three letter amino acid code</li>
<li><strong class="pname"><code>standard</code></strong> (boolean) - flag to check for the 20 AA (default false)</li>
</ul></dd>
</dl>
</td></tr></table>
</div>
<br />
<!-- ==================== VARIABLES DETAILS ==================== -->
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<td align="left"><span class="table-header">Variables Details</span></td>
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<h3 class="epydoc">__doc__</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
"""
Polypeptide related classes (construction and representation).
Example:
>>> ppb=PPBuilder()
>>> for pp in ppb.build_peptides(structure):
>>> print pp.get_sequence()
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="standard_aa_names"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">standard_aa_names</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">HIS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ILE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="aa3"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">aa3</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">HIS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ILE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="d1_to_index"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">d1_to_index</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">: </code>2<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code>4<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>6<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>7<code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="dindex_to_1"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">dindex_to_1</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">A</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">C</code><code class="variable-quote">'</code><code class="variable-op">,</code>
2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code><code class="variable-op">,</code>
3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">E</code><code class="variable-quote">'</code><code class="variable-op">,</code>
4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">,</code>
5<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">G</code><code class="variable-quote">'</code><code class="variable-op">,</code>
6<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">,</code>
7<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="d3_to_index"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">d3_to_index</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ARG</code><code class="variable-quote">'</code><code class="variable-op">: </code>14<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ASN</code><code class="variable-quote">'</code><code class="variable-op">: </code>11<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">: </code>2<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLN</code><code class="variable-quote">'</code><code class="variable-op">: </code>13<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">,</code>
<code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="dindex_to_3"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">dindex_to_3</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ALA</code><code class="variable-quote">'</code><code class="variable-op">,</code>
1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">CYS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ASP</code><code class="variable-quote">'</code><code class="variable-op">,</code>
3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">GLU</code><code class="variable-quote">'</code><code class="variable-op">,</code>
4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">PHE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
5<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">GLY</code><code class="variable-quote">'</code><code class="variable-op">,</code>
6<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">HIS</code><code class="variable-quote">'</code><code class="variable-op">,</code>
7<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ILE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
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