Name: bwa Version: 0.6.1 Release: 2%{?dist} Summary: Burrows-Wheeler Alignment tool Group: Applications/Engineering License: GPLv3 URL: http://bio-bwa.sourceforge.net/ Source0: http://downloads.sourceforge.net/bio-%{name}/%{name}-%{version}.tar.bz2 Patch0: bwa-nosse2-i386.patch BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildRequires: zlib-devel %description BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads. %prep %setup -q #Avoid SSE2 on 32-bit %ifarch i386 i686 %patch0 -p1 -b .bwa-nosse2-i386.patch %endif %build make %{?_smp_mflags} CFLAGS="%{optflags}" %install rm -rf %{buildroot} mkdir -p %{buildroot}/%{_bindir} mkdir -p %{buildroot}/%{_mandir}/man1 install -m 0755 bwa %{buildroot}/%{_bindir} install -m 0755 solid2fastq.pl %{buildroot}/%{_bindir} install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir} install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1 %clean rm -rf %{buildroot} %files %defattr(-,root,root,-) %doc COPYING NEWS %{_mandir}/man1/%{name}.1* %{_bindir}/bwa %{_bindir}/qualfa2fq.pl %{_bindir}/solid2fastq.pl %changelog * Sun May 13 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-2 - add patch to avoid SSE2 on i386 * Wed Jan 11 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-1 - update to 0.6.1 * Thu Feb 17 2011 Adam Huffman <bloch@verdurin.com> - 0.5.9-1 - new upstream release 0.5.9 * Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Wed Jan 5 2011 Adam Huffman <bloch@verdurin.com> - 0.5.8c-1 - upstream bugfix release * Tue Jul 20 2010 Adam Huffman <bloch@verdurin.com> - 0.5.8a-1 - new upstream release * Sat May 29 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-2 - fix source URL - install manpage - fix cflags * Fri May 28 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-1 - initial version