%global packname BSgenome.Celegans.UCSC.ce2 %global Rvers 2.11.0 Name: R-%{packname} Version: 1.3.17 Release: 2%{dist} Summary: Caenorhabditis elegans genome (UCSC Release ce2) Summary(fr): Genome de Caenorhabditis elegans (UCSC Release ce2) Group: Applications/Engineering License: Artistic 2.0 URL: http://www.bioconductor.org/packages/release/data/annotation/html/%{packname}.html Source0: http://www.bioconductor.org/packages/release/data/annotation/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildArch: noarch Requires: R-core >= %{Rvers} R-BSgenome BuildRequires: R-devel >= %{Rvers} tex(latex) R-BSgenome %description Caenorhabditis elegans genome grabbed from UCSC (ce2, Mar. 2004) and stored in Biostrings objects %description -l fr Genome de Caenorhabditis elegans extrait par UCSC (ce2, Mar. 2004) et stocké dans un objet Biostrings %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} mkdir -p %{buildroot}%{_datadir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css %check #this section refered to Biostrings which refer to this package #%{_bindir}/R CMD check %{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/extdata %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/R #noarch %dir %{_datadir}/R/library/%{packname} %doc %{_datadir}/R/library/%{packname}/html %doc %{_datadir}/R/library/%{packname}/DESCRIPTION %changelog * Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.3.17-2 - rebuild for R 2.14.0 * Sat Jul 02 2011 pingou <pingou@pingoured.fr> 1.3.17-1 - Update to version 1.3.17 * Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.3.16-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Mon Jun 28 2010 pingou <pingou@pingoured.fr> 1.3.16-2 - Remove the tag to BioC - Remove R-post and R-postun - Fix R on R-core * Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.3.16-1 - Update to 1.3.16 - Remove %post and %%postun - Adapt %%files to R-2.10.0 * Wed Sep 02 2009 pingou <pingou@pingoured.fr> 1.3.13-4 - Increase release tag * Wed Sep 02 2009 pingou <pingou@pingoured.fr> 1.3.13-3 - Re-add the dist tag cf https://fedorahosted.org/rel-eng/ticket/2152 * Fri Jul 31 2009 pingou <pingou@pingoured.fr> 1.3.13-2 - Increase release tag * Fri Jul 31 2009 pingou <pingou@pingoured.fr> 1.3.13-1 - Update license tag - Use global instead of define - Update the R and BR (add R-BSgenome) - Finally update the package * Sat Jan 05 2008 Pingou <pingoufc4@yahoo.fr> 1.2.0-5 - Remove the distro specific build of this package * Fri Nov 23 2007 Pingou <pingoufc4@yahoo.fr> 1.2.0-4 - Correction on the dependancies * Thu Sep 20 2007 Pingou <pingoufc4@yahoo.fr> 1.2.0-3 - Changes in the requires * Wed Aug 29 2007 Pingou <pingoufc4@yahoo.fr> 1.2.0-2 -Change the license tag * Mon Jul 16 2007 Pingou <pingoufc4@yahoo.fr> 1.2.0-1 - initial package for Fedora