Sophie: R-RScaLAPACK-0.6.1-8.fc16 src

R-RScaLAPACK-0.6.1-8.fc16.src.rpm

%define packname RScaLAPACK

Name: R-%{packname}
Version: 0.6.1
Release: 8%{?dist}
Source0: ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}.tar.gz
License: MIT
URL: http://cran.r-project.org/web/packages/RScaLAPACK/index.html
Group: Applications/Engineering
Summary: An interface to perform parallel computation on linear algebra problems using ScaLAPACK
BuildRequires: openmpi-devel, R-devel, tetex-latex, lapack-devel, blas-devel, atlas-devel
BuildRequires: gcc-gfortran, blacs-openmpi-devel, scalapack-openmpi-devel, autoconf, automake
Requires: R-core, scalapack-openmpi, openmpi
Patch0: R-RScaLAPACK-0.5.1-mpi-blacs.patch
Patch3: R-RScaLAPACK-0.6.1-configurefix.patch
Patch6: R-RScaLAPACK-0.6.1-mpicc.patch
Patch7: R-RScaLAPACK-0.6.1-atlas.patch
Patch8: R-RScaLAPACK-0.6.1-lapack.patch
Patch9: R-RScaLAPACK-0.6.1-mpiblacs.patch
Patch10: R-RScaLAPACK-0.6.1-AC_MSG_ERROR.patch
Patch11: R-RScaLAPACK-0.6.1-blas.patch
Patch12: R-RScaLAPACK-0.6.1-fflags.patch

%description
R package:
An R add-on package capable of carrying out parallel computation through 
a single function call from the R environment. It uses the high-performance 
ScaLAPACK library for the linear algebra computations.

%prep
%setup -q -c -n %{packname}
%patch0 -p1 -b .mpi
%patch3 -p1 -b .configurefix
%patch6 -p1 -b .mpicc
%patch7 -p1 -b .atlas
%patch8 -p1 -b .lapack
%patch9 -p1 -b .mpiblacs
%patch10 -p1 -b .AC_MSG_ERROR
%patch11 -p1 -b .blas
%patch12 -p1 -b .fflags
cd RScaLAPACK

R_CC=`R CMD config CC`
R_F77=`R CMD config F77`
R_SHLIB_LD=`R CMD config SHLIB_LD`
MPICC=`echo $R_CC| sed 's|gcc|mpicc|'`
MPIF77=`echo $R_F77 | sed 's|gfortran|mpif77|'`
MPISHLIB_LD=`echo $R_SHLIB_LD | sed 's|gcc|mpicc|'`
sed -i "s|@MPICC@|$MPICC|g" configure.in
sed -i "s|@MPIF77@|$MPIF77|g" configure.in
sed -i "s|@MPICC@|$MPICC|g" src/Makefile.in
sed -i "s|@MPISHLIB_LD@|$MPISHLIB_LD|" src/Makefile.in

aclocal
autoconf

%build

%install
mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library

# Build OpenMPI version
export MPI_COMPILER=openmpi
%{_openmpi_load}
OPENMPICFLAGS="$CFLAGS"
OPENMPILDFLAGS="-L$MPI_LIB"
OPENMPI_INCLUDE="-I$MPI_INCLUDE"
export RPM_OPT_FLAGS="%{optflags}"
export CFLAGS="$RPM_OPT_FLAGS $LDFLAGS $OPENMPILDFLAGS -lutil -lmpiblacsCinit -lmpiblacs -lmpi -llapack"
export CC=mpicc
export F77=mpif77
export FFLAGS="$RPM_OPT_FLAGS $LDFLAGS $OPENMPILDFLAGS -lutil -llapack -lmpi"
export MPI_INCLUDE="$OPENMPI_INCLUDE"
%{_bindir}/R CMD INSTALL --library=$RPM_BUILD_ROOT%{_libdir}/R/library \
                         --configure-args="--with-blacs=%{_libdir}/openmpi/lib/ --with-lapack=%{_libdir} --with-blas=%{_libdir} --with-atlas=%{_libdir}/atlas/ --with-scalapack=%{_libdir}/openmpi/lib CC=mpicc FFLAGS='$RPM_OPT_FLAGS $LDFLAGS $OPENMPILDFLAGS -lutil -llapack -lmpi'" %{packname}
%{_openmpi_unload}

# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/R.css

%check
# Check is pretty darned broken.
# %%{_bindir}/R CMD check %{packname}

%files
%{_libdir}/R/library/%{packname}/

%changelog
* Wed Nov  9 2011 Tom Callaway <spot@fedoraproject.org> - 0.6.1-8
- rebuild for R 2.14.0

* Thu Aug  4 2011 Tom Callaway <spot@fedoraproject.org> - 0.6.1-7
- fix package against cleaned up scalapack

* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.1-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild

* Wed Oct 20 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.6.1-5
- bump for new MPI

* Thu Jul  8 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.6.1-4
- fix blacs path passed to configure

* Thu Jul  8 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.6.1-3
- drop scriptlets

* Mon Feb 22 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.6.1-2
- adjust package to use proper blacs paths

* Thu Jan 14 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.6.1-1
- glue this package back together, update to 0.6.1

* Wed Aug 19 2009 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-22
- fix url, drop old bitsize macros

* Thu Aug  6 2009 Tom "spot" Callaway <tcallawa@redhat.com>  - 0.5.1-21
- Update for new MPI scheme

* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.1-20
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild

* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.1-19
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild

* Wed Sep 24 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-18
- ... and forgot to remove one last bit of the lam ick

* Wed Sep 24 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-17
- forgot to add one patch

* Wed Sep 24 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-16
- use openmpi instead of lam

* Tue Jul  8 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-15
- look for mpi_comm_create_ not mpi_comm_create__

* Tue Jul  8 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-14
- source /etc/profiles/modules.sh, then use module load

* Tue Jul  8 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-13
- ok, lets try this.

* Tue Jul  8 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-12
- fix compile against new lam

* Wed Mar 12 2008 Tom "spot" Callaway <tcallawa@redhat.com> - 0.5.1-11.2
- debugging build pass

* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 0.5.1-11.1
- Autorebuild for GCC 4.3

* Sun Aug 26 2007 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-10
- modernize spec file
- fix license tag
- rebuild for BuildID

* Fri Mar 30 2007 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-9
- include bitsize specific lam include directory

* Thu Oct 05 2006 Christian Iseli <Christian.Iseli@licr.org> 0.5.1-8
 - rebuilt for unwind info generation, broken in gcc-4.1.1-21

* Fri Sep 15 2006 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-6
- BR: lam-devel

* Fri Sep 15 2006 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-4
- fc6 bump

* Thu Mar  9 2006 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-3
- forgot to upload source

* Sun Feb 26 2006 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-2
- get this thing working again

* Mon Jan  9 2006 Tom "spot" Callaway <tcallawa@redhat.com> 0.5.1-1
- bump to 0.5.1

* Mon May 16 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-9
- test fails unless you are running it on a lam cluster,
  so don't run it here

* Sun May 15 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-8
- fc3 branch doesn't need gcc4 patch

* Sun May 15 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-7
- 64 bit lib fix

* Mon May  9 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-6
- remove hardcoded dist tags

* Sun May  8 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-5
- blacs and scalapack need to be BuildRequires too.

* Sun May  8 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-4
- add lam as BuildRequires

* Sun Apr 24 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-3
- add dist tag

* Tue Apr 19 2005 Tom "spot" Callaway <tcallawa@redhat.com> 0.4.0-2
- add gcc-gfortran as a BuildRequires (gcc-g77 for fc3)

* Mon Apr 18 2005 Tom "spot" Callaway <tcallawa@redhat.com> 
- Initial package creation