%define packname Biobase %define Rversion 2.11.0 Name: R-%{packname} Version: 2.8.0 Release: 1%{dist} Summary: Base functions for Bioconductor Group: Applications/Engineering License: Artistic 2.0 URL: http://bioconductor.org/packages/release/bioc/html/Biobase.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R-tkWidgets BuildRequires: R-devel >= %{Rversion} tex(latex) R-tkWidgets %description Base functions for Bioconductor (bioconductor.org). Biobase provides functions that are needed by many other Bioconductor packages or which replace R functions. %description -l fr Bibliothèque contenant des fonctions requises par d'autres bibliothèques ou qui remplacent certaines fonctions dans R %prep %setup -c -q -n %{packname} %build %install rm -rf %{buildroot} mkdir -p %{buildroot}%{_libdir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_libdir}/R/library/R.css %check # This library ask for the library ALL which can not be compiled without # R-Biobase #%{_bindir}/R CMD check %{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{_libdir}/R/library/%{packname} %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/Meta/ %{_libdir}/R/library/%{packname}/R/ %{_libdir}/R/library/%{packname}/help/ %{_libdir}/R/library/%{packname}/libs/ %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/UnitTests/ %{_libdir}/R/library/%{packname}/data %{_libdir}/R/library/%{packname}/scripts %{_libdir}/R/library/%{packname}/ExpressionSet %{_libdir}/R/library/%{packname}/CITATION %{_libdir}/R/library/%{packname}/Code %{_libdir}/R/library/%{packname}/extdata %{_libdir}/R/library/%{packname}/testClass.R %{_libdir}/R/library/%{packname}/NEWS %doc %{_libdir}/R/library/%{packname}/doc %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/html %changelog * Tue May 11 2010 pingou <pingou@pingoured.fr> 2.8.0-1 - Update to version 2.8.0 - Fix url to a more stable form - Fix BR for latex - Remove R on post/postun since there is no post/postun * Thu Dec 17 2009 pingou <pingou@pingoured.fr> 2.6.1-1 - Update to 2.6.1 * Sat Nov 21 2009 pingou <pingou@pingoured.fr> 2.6.0-1 - Update to 2.6.0 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 * Fri Nov 20 2009 pingou <pingou@pingoured.fr> 2.4.1-2 - Rebuild * Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Fri Jun 12 2009 pingou <pingou@pingoured.fr> 2.4.1-1 - Update to 2.4.1 - Remove bad french translation * Tue Apr 28 2009 pingou <pingou@pingoured.fr> 2.4.0-1 - Update to Bioconductor 2.4 and R-2.9.0 * Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Wed Feb 18 2009 pingou <pingou-at-pingoured.fr> 2.2.2-1 - New update * Thu Jan 22 2009 pingou <pingoufc4-at-yahoo.fr> 2.2.1-1 - New update * Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-2 - Correct the Source0 * Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-1 - Update to version 2.2.0 for R >= 2.8.0 * Wed Jun 25 2008 pingou <pingoufc4-at-yahoo.fr> 2.0.1-1 - Update to version 2.0.1 * Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 2.0.0-1 - Update to bioconductor 2.2 * Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.16.1-5 - Autorebuild for GCC 4.3 * Tue Jan 08 2008 Pingou <pingoufc4@yahoo.fr> 1.16.1-4 - change on the BR * Sun Nov 18 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-3 - Change on the description * Sun Nov 18 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-2 - Change on the install command - Change on the Requires - Change on the description * Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-1 - Update to bioconductor 2.1 * Fri Jul 13 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-4 - Change in the R and BR section to fit the guidelines * Tue Jul 10 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-3 - Change in post and postun to fit the packaging guidelines - Change in prep to fit the guidelines * Mon Jun 24 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-2 - Change de %%doc to avoid redundancy * Thu May 17 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-1 - Submitting to Fedora Extras * Wed Apr 25 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-0.1 - Build of the rpm