%global packname AnnotationDbi %global Rvers 2.11.0 Name: R-%{packname} Version: 1.10.1 Release: 1%{dist} Summary: Annotation Database Interface Group: Applications/Engineering License: Artistic 2.0 URL: http://bioconductor.org/packages/release/bioc/html/%{packname}.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildArch: noarch # The suggested requirement are not added here based on: # - the amount # - they are mostly database (content) # - circular dependancies (such as with hgu95av2) Requires: R-core >= %{Rvers} R-methods R-utils Requires: R-Biobase R-DBI R-RSQLite BuildRequires: R-devel >= %{Rvers} tex(latex) R-methods BuildRequires: R-utils R-Biobase R-DBI R-RSQLite %description Provides user interface and database connection code for annotation data packages using SQLite data storage. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # noarch -> Architecture independent package mkdir -p %{buildroot}%{_datadir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css rm -f %{buildroot}%{_datadir}/R/library/AnnotationDbi/ProbePkg-template/data/.dummy.txt %check # Not performed, the list of metadata asked is too long and not mandatory #%{_bindir}/R CMD check %{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{_datadir}/R/library/%{packname} %doc %{_datadir}/R/library/%{packname}/html %doc %{_datadir}/R/library/%{packname}/DESCRIPTION %doc %{_datadir}/R/library/%{packname}/doc %doc %{_datadir}/R/library/%{packname}/NEWS %doc %{_datadir}/R/library/%{packname}/TODO %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/R %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/AnnDbPkg-templates %{_datadir}/R/library/%{packname}/ProbePkg-template %{_datadir}/R/library/%{packname}/DBschemas %{_datadir}/R/library/%{packname}/extdata %{_datadir}/R/library/%{packname}/NOTES-Herve %changelog * Tue May 11 2010 pingou <pingou@pingoured.fr> 1.10.1-1 - Update to version 1.10.1 - Fix url to a more stable form - Fix R for latex - Remove R post/postun * Sat Mar 27 2010 pingou <pingou@pingoured.fr> 1.8.2-1 - Update to 1.8.2 * Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.8.1-1 - Update to 1.8.1 - Remove the %%post and %%postun - Adapt %%files to the new R * Sat Aug 01 2009 pingou <pingou@pingoured.fr> 1.6.1-1 - Update to 1.6.1 * Wed May 06 2009 pingou <pingou@pingoured.fr> 1.6.0-1 - initial package for Fedora